RNA–Protein interactions for RNA: ENST00000542002.5

YBX3-212, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-212ENST00000542002 ARAP2Q8WZ64 1704 aa11.94□□□□□ -0.5
YBX3-212ENST00000542002 SSC5DA1L4H1 1573 aa11.93□□□□□ -0.5
YBX3-212ENST00000542002 GAKO14976 1311 aa11.93□□□□□ -0.5
YBX3-212ENST00000542002 MAST3O60307 1309 aa11.93□□□□□ -0.5
YBX3-212ENST00000542002 USP2O75604 605 aaPredicted RBP11.93□□□□□ -0.5
YBX3-212ENST00000542002 SPTY2D1Q68D10 685 aaPredicted RBP11.93□□□□□ -0.5
YBX3-212ENST00000542002 RGMBQ6NW40 437 aa11.93□□□□□ -0.5
YBX3-212ENST00000542002 PAXIP1Q6ZW49 1069 aaPredicted RBP11.93□□□□□ -0.5
YBX3-212ENST00000542002 CLASRPQ8N2M8 674 aaKnown RBP11.93□□□□□ -0.5
YBX3-212ENST00000542002 ZGPATQ8N5A5 531 aaKnown RBP11.93□□□□□ -0.5
YBX3-212ENST00000542002 EXOC6Q8TAG9 804 aa11.93□□□□□ -0.5
YBX3-212ENST00000542002 FAM198AQ9UFP1 575 aa11.93□□□□□ -0.5
YBX3-212ENST00000542002 PPP2R3BQ9Y5P8 575 aa11.93□□□□□ -0.5
YBX3-212ENST00000542002 GPR75-ASB3A0A0A6YYF3 556 aa11.92□□□□□ -0.5
YBX3-212ENST00000542002 ZNF157P51786 506 aaPredicted RBP11.92□□□□□ -0.5
YBX3-212ENST00000542002 FKBP1BP68106 108 aa11.92□□□□□ -0.5
YBX3-212ENST00000542002 LDLRAD1Q5T700 205 aa11.92□□□□□ -0.5
YBX3-212ENST00000542002 ADGRA1Q86SQ6 560 aa11.92□□□□□ -0.5
YBX3-212ENST00000542002 DZIP1Q86YF9 867 aaKnown RBP11.92□□□□□ -0.5
YBX3-212ENST00000542002 RAI14Q9P0K7 980 aa11.92□□□□□ -0.5
YBX3-212ENST00000542002 LRP2BPQ9P2M1 347 aa11.92□□□□□ -0.5
YBX3-212ENST00000542002 TRPM7Q96QT4 1865 aa11.91□□□□□ -0.5
YBX3-212ENST00000542002 WDHD1O75717 1129 aaPredicted RBP11.91□□□□□ -0.5
YBX3-212ENST00000542002 IFIT2P09913 472 aaKnown RBP11.91□□□□□ -0.5
YBX3-212ENST00000542002 ECE1P42892 770 aa11.91□□□□□ -0.5
YBX3-212ENST00000542002 BTDP43251 543 aa11.91□□□□□ -0.5
YBX3-212ENST00000542002 RHBDL3P58872 404 aa11.91□□□□□ -0.5
YBX3-212ENST00000542002 TCP10Q12799 353 aa11.91□□□□□ -0.5
YBX3-212ENST00000542002 TTLL12Q14166 644 aaPredicted RBP11.91□□□□□ -0.5
YBX3-212ENST00000542002 MAP3K11Q16584 847 aa11.91□□□□□ -0.5
YBX3-212ENST00000542002 FKBP1CQ5VVH2 108 aa11.91□□□□□ -0.5
YBX3-212ENST00000542002 EDC3Q96F86 508 aaKnown RBP11.91□□□□□ -0.5
YBX3-212ENST00000542002 LRRCC1Q9C099 1032 aa11.91□□□□□ -0.5
YBX3-212ENST00000542002 DDX4Q9NQI0 724 aaKnown RBP11.91□□□□□ -0.5
YBX3-212ENST00000542002 WBP1LQ9NX94 342 aa11.91□□□□□ -0.5
YBX3-212ENST00000542002 ANGEL1Q9UNK9 670 aaKnown RBP11.91□□□□□ -0.5
YBX3-212ENST00000542002 MROH7-TTC4A0A0A0MT08 1334 aa11.9□□□□□ -0.5
YBX3-212ENST00000542002 HSPA1AP0DMV8 641 aaKnown RBP11.9□□□□□ -0.5
YBX3-212ENST00000542002 HSPA1BP0DMV9 641 aaKnown RBP11.9□□□□□ -0.5
YBX3-212ENST00000542002 SLURP2P0DP57 97 aa11.9□□□□□ -0.5
YBX3-212ENST00000542002 TNFAIP1Q13829 316 aa11.9□□□□□ -0.5
YBX3-212ENST00000542002 SUPT20HL1Q3ZLR7 823 aa11.9□□□□□ -0.5
YBX3-212ENST00000542002 SH3BP5LQ7L8J4 393 aa11.9□□□□□ -0.5
YBX3-212ENST00000542002 FAM83AQ86UY5 434 aa11.9□□□□□ -0.5
YBX3-212ENST00000542002 RASAL3Q86YV0 1011 aa11.9□□□□□ -0.5
YBX3-212ENST00000542002 CLMNQ96JQ2 1002 aa11.9□□□□□ -0.5
YBX3-212ENST00000542002 IGHDP01880 384 aa11.89□□□□□ -0.51
YBX3-212ENST00000542002 SLC10A3P09131 477 aa11.89□□□□□ -0.51
YBX3-212ENST00000542002 NF2P35240 595 aa11.89□□□□□ -0.51
YBX3-212ENST00000542002 MAP2K2P36507 400 aa11.89□□□□□ -0.51
YBX3-212ENST00000542002 TNNI2P48788 182 aa11.89□□□□□ -0.51
YBX3-212ENST00000542002 IRX6P78412 446 aaPredicted RBP11.89□□□□□ -0.51
YBX3-212ENST00000542002 KIF23Q02241 960 aaPredicted RBP11.89□□□□□ -0.51
YBX3-212ENST00000542002 MIGA2Q7L4E1 593 aa11.89□□□□□ -0.51
YBX3-212ENST00000542002 ARMC9Q7Z3E5 817 aa11.89□□□□□ -0.51
YBX3-212ENST00000542002 OTUD7AQ8TE49 926 aaPredicted RBP11.89□□□□□ -0.51
YBX3-212ENST00000542002 FAM151AQ8WW52 585 aa11.89□□□□□ -0.51
YBX3-212ENST00000542002 CCDC102AQ96A19 550 aa11.89□□□□□ -0.51
YBX3-212ENST00000542002 IDI2Q9BXS1 227 aa11.89□□□□□ -0.51
YBX3-212ENST00000542002 BOLA2Q9H3K6 86 aa11.89□□□□□ -0.51
YBX3-212ENST00000542002 FOXN1O15353 648 aa11.88□□□□□ -0.51
YBX3-212ENST00000542002 CHGBP05060 677 aa11.88□□□□□ -0.51
YBX3-212ENST00000542002 ATP5JP18859 108 aa11.88□□□□□ -0.51
YBX3-212ENST00000542002 RGS3P49796 1198 aa11.88□□□□□ -0.51
YBX3-212ENST00000542002 GSTO1P78417 241 aa11.88□□□□□ -0.51
YBX3-212ENST00000542002 HDAC1Q13547 482 aaPredicted RBP11.88□□□□□ -0.51
YBX3-212ENST00000542002 SLFNL1Q499Z3 407 aa11.88□□□□□ -0.51
YBX3-212ENST00000542002 TSHZ3Q63HK5 1081 aa11.88□□□□□ -0.51
YBX3-212ENST00000542002 NAA16Q6N069 864 aaPredicted RBP11.88□□□□□ -0.51
YBX3-212ENST00000542002 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.88□□□□□ -0.51
YBX3-212ENST00000542002 SLF2Q8IX21 1173 aa11.88□□□□□ -0.51
YBX3-212ENST00000542002 SH3RF3Q8TEJ3 882 aaPredicted RBP11.88□□□□□ -0.51
YBX3-212ENST00000542002 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.88□□□□□ -0.51
YBX3-212ENST00000542002 CSRNP1Q96S65 589 aa11.88□□□□□ -0.51
YBX3-212ENST00000542002 TMOD2Q9NZR1 351 aa11.88□□□□□ -0.51
YBX3-212ENST00000542002 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.88□□□□□ -0.51
YBX3-212ENST00000542002 RFX7Q2KHR2 1363 aa11.88□□□□□ -0.51
YBX3-212ENST00000542002 AKAP11Q9UKA4 1901 aa11.88□□□□□ -0.51
YBX3-212ENST00000542002 DDTLA6NHG4 134 aaPredicted RBP11.87□□□□□ -0.51
YBX3-212ENST00000542002 GOLIM4O00461 696 aa11.87□□□□□ -0.51
YBX3-212ENST00000542002 PPP1R12BO60237 982 aaPredicted RBP11.87□□□□□ -0.51
YBX3-212ENST00000542002 IDH1O75874 414 aaKnown RBP11.87□□□□□ -0.51
YBX3-212ENST00000542002 LDHCP07864 332 aa11.87□□□□□ -0.51
YBX3-212ENST00000542002 GJA5P36382 358 aa11.87□□□□□ -0.51
YBX3-212ENST00000542002 PPP4CP60510 307 aa11.87□□□□□ -0.51
YBX3-212ENST00000542002 DYNLL1P63167 89 aaKnown RBP11.87□□□□□ -0.51
YBX3-212ENST00000542002 MKRN3Q13064 507 aaKnown RBP11.87□□□□□ -0.51
YBX3-212ENST00000542002 NOGQ13253 232 aa11.87□□□□□ -0.51
YBX3-212ENST00000542002 MAGEB6Q8N7X4 407 aa11.87□□□□□ -0.51
YBX3-212ENST00000542002 HAUS7Q99871 368 aa11.87□□□□□ -0.51
YBX3-212ENST00000542002 AATFQ9NY61 560 aaKnown RBP eCLIP11.87□□□□□ -0.51
YBX3-212ENST00000542002 PAPPA2Q9BXP8 1791 aa11.87□□□□□ -0.51
YBX3-212ENST00000542002 ENTPD3O75355 529 aa11.86□□□□□ -0.51
YBX3-212ENST00000542002 CYP7A1P22680 504 aa11.86□□□□□ -0.51
YBX3-212ENST00000542002 MAP2K1Q02750 393 aaPredicted RBP11.86□□□□□ -0.51
YBX3-212ENST00000542002 PICALMQ13492 652 aa11.86□□□□□ -0.51
YBX3-212ENST00000542002 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.86□□□□□ -0.51
YBX3-212ENST00000542002 ZKSCAN4Q969J2 545 aaPredicted RBP11.86□□□□□ -0.51
YBX3-212ENST00000542002 SLC10A4Q96EP9 437 aa11.86□□□□□ -0.51
YBX3-212ENST00000542002 DNAJC2Q99543 621 aaKnown RBP11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms