RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 MRIQ9BWK5 157 aa19.38■□□□□ 0.69
CLSTN3-213ENST00000541953 SLURP2P0DP57 97 aa19.37■□□□□ 0.69
CLSTN3-213ENST00000541953 PPIL2Q13356 520 aa19.37■□□□□ 0.69
CLSTN3-213ENST00000541953 CDC42EP5Q6NZY7 148 aa19.37■□□□□ 0.69
CLSTN3-213ENST00000541953 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.37■□□□□ 0.69
CLSTN3-213ENST00000541953 SH3TC2Q8TF17 1288 aa19.37■□□□□ 0.69
CLSTN3-213ENST00000541953 LPIN2Q92539 896 aa19.37■□□□□ 0.69
CLSTN3-213ENST00000541953 TMOD2Q9NZR1 351 aa19.37■□□□□ 0.69
CLSTN3-213ENST00000541953 PCDH10Q9P2E7 1040 aa19.37■□□□□ 0.69
CLSTN3-213ENST00000541953 FAM198AQ9UFP1 575 aa19.37■□□□□ 0.69
CLSTN3-213ENST00000541953 PA2G4Q9UQ80 394 aaKnown RBP19.37■□□□□ 0.69
CLSTN3-213ENST00000541953 SZT2Q5T011 3432 aa19.37■□□□□ 0.69
CLSTN3-213ENST00000541953 AK9Q5TCS8 1911 aa19.37■□□□□ 0.69
CLSTN3-213ENST00000541953 DOCK2Q92608 1830 aa19.37■□□□□ 0.69
CLSTN3-213ENST00000541953 MAST3O60307 1309 aa19.36■□□□□ 0.69
CLSTN3-213ENST00000541953 ADGRA2Q96PE1 1338 aa19.36■□□□□ 0.69
CLSTN3-213ENST00000541953 TLR2O60603 784 aa19.36■□□□□ 0.69
CLSTN3-213ENST00000541953 CETPP11597 493 aa19.36■□□□□ 0.69
CLSTN3-213ENST00000541953 SLC5A1P13866 664 aa19.36■□□□□ 0.69
CLSTN3-213ENST00000541953 MOGSQ13724 837 aa19.36■□□□□ 0.69
CLSTN3-213ENST00000541953 SLC9C1Q4G0N8 1177 aa19.36■□□□□ 0.69
CLSTN3-213ENST00000541953 SUGT1Q9Y2Z0 365 aa19.36■□□□□ 0.69
CLSTN3-213ENST00000541953 ATRNL1Q5VV63 1379 aa19.35■□□□□ 0.69
CLSTN3-213ENST00000541953 ADORA1P30542 326 aa19.35■□□□□ 0.69
CLSTN3-213ENST00000541953 PHKA1P46020 1223 aa19.35■□□□□ 0.69
CLSTN3-213ENST00000541953 LACTBP83111 547 aaPredicted RBP19.35■□□□□ 0.69
CLSTN3-213ENST00000541953 SNAPC2Q13487 334 aa19.35■□□□□ 0.69
CLSTN3-213ENST00000541953 SMC4Q9NTJ3 1288 aa19.35■□□□□ 0.69
CLSTN3-213ENST00000541953 MYH2Q9UKX2 1941 aa19.35■□□□□ 0.69
CLSTN3-213ENST00000541953 RANBP2P49792 3224 aaKnown RBP19.34■□□□□ 0.69
CLSTN3-213ENST00000541953 ATP2B3Q16720 1220 aa19.34■□□□□ 0.69
CLSTN3-213ENST00000541953 WDR66Q8TBY9 1149 aa19.34■□□□□ 0.69
CLSTN3-213ENST00000541953 FAM151AQ8WW52 585 aa19.34■□□□□ 0.69
CLSTN3-213ENST00000541953 ZNF341Q9BYN7 854 aa19.34■□□□□ 0.69
CLSTN3-213ENST00000541953 CPA4Q9UI42 421 aa19.34■□□□□ 0.69
CLSTN3-213ENST00000541953 ZNF112Q9UJU3 913 aa19.34■□□□□ 0.69
CLSTN3-213ENST00000541953 RFX7Q2KHR2 1363 aa19.33■□□□□ 0.69
CLSTN3-213ENST00000541953 HABP4Q5JVS0 413 aaKnown RBP19.33■□□□□ 0.68
CLSTN3-213ENST00000541953 C17orf99Q6UX52 265 aa19.33■□□□□ 0.68
CLSTN3-213ENST00000541953 LRRFIP2Q9Y608 721 aaKnown RBP19.33■□□□□ 0.68
CLSTN3-213ENST00000541953 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP19.33■□□□□ 0.68
CLSTN3-213ENST00000541953 PPATQ06203 517 aa19.32■□□□□ 0.68
CLSTN3-213ENST00000541953 ALDH1L2Q3SY69 923 aa19.32■□□□□ 0.68
CLSTN3-213ENST00000541953 DCAF15Q66K64 600 aa19.32■□□□□ 0.68
CLSTN3-213ENST00000541953 TRMT2AQ8IZ69 625 aaKnown RBP19.32■□□□□ 0.68
CLSTN3-213ENST00000541953 KCNH4Q9UQ05 1017 aa19.32■□□□□ 0.68
CLSTN3-213ENST00000541953 PTPRFP10586 1907 aa19.31■□□□□ 0.68
CLSTN3-213ENST00000541953 PHIPQ8WWQ0 1821 aa19.31■□□□□ 0.68
CLSTN3-213ENST00000541953 UBTFL1P0CB47 393 aaPredicted RBP19.31■□□□□ 0.68
CLSTN3-213ENST00000541953 MTFR1Q15390 333 aa19.31■□□□□ 0.68
CLSTN3-213ENST00000541953 SH3BP5LQ7L8J4 393 aa19.31■□□□□ 0.68
CLSTN3-213ENST00000541953 TRIM47Q96LD4 638 aa19.31■□□□□ 0.68
CLSTN3-213ENST00000541953 MEIS3Q99687 375 aa19.31■□□□□ 0.68
CLSTN3-213ENST00000541953 ZCCHC17Q9NP64 241 aaKnown RBP19.31■□□□□ 0.68
CLSTN3-213ENST00000541953 FRMD4AQ9P2Q2 1039 aaPredicted RBP19.31■□□□□ 0.68
CLSTN3-213ENST00000541953 NOB1Q9ULX3 412 aaKnown RBP19.31■□□□□ 0.68
CLSTN3-213ENST00000541953 CEP290O15078 2479 aa19.31■□□□□ 0.68
CLSTN3-213ENST00000541953 PDHXO00330 501 aa19.3■□□□□ 0.68
CLSTN3-213ENST00000541953 CIAO1O76071 339 aa19.3■□□□□ 0.68
CLSTN3-213ENST00000541953 ZEB1P37275 1124 aaPredicted RBP19.3■□□□□ 0.68
CLSTN3-213ENST00000541953 SHISA4Q96DD7 197 aa19.3■□□□□ 0.68
CLSTN3-213ENST00000541953 TMEM106CQ9BVX2 250 aa19.3■□□□□ 0.68
CLSTN3-213ENST00000541953 USP40Q9NVE5 1235 aa19.3■□□□□ 0.68
CLSTN3-213ENST00000541953 SALL1Q9NSC2 1324 aa19.29■□□□□ 0.68
CLSTN3-213ENST00000541953 MGAMO43451 1857 aa19.29■□□□□ 0.68
CLSTN3-213ENST00000541953 LDHBP07195 334 aaKnown RBP19.29■□□□□ 0.68
CLSTN3-213ENST00000541953 SLC4A8Q2Y0W8 1093 aa19.29■□□□□ 0.68
CLSTN3-213ENST00000541953 GPAT2Q6NUI2 795 aa19.29■□□□□ 0.68
CLSTN3-213ENST00000541953 ANKRD23Q86SG2 305 aa19.29■□□□□ 0.68
CLSTN3-213ENST00000541953 PHF20L1A8MW92 1017 aa19.28■□□□□ 0.68
CLSTN3-213ENST00000541953 CYP2C8P10632 490 aa19.28■□□□□ 0.68
CLSTN3-213ENST00000541953 RGS3P49796 1198 aa19.28■□□□□ 0.68
CLSTN3-213ENST00000541953 RASGRF1Q13972 1273 aa19.28■□□□□ 0.68
CLSTN3-213ENST00000541953 NOL9Q5SY16 702 aaKnown RBP19.28■□□□□ 0.68
CLSTN3-213ENST00000541953 CCDC102BQ68D86 513 aa19.28■□□□□ 0.68
CLSTN3-213ENST00000541953 ZNF384Q8TF68 577 aa19.28■□□□□ 0.68
CLSTN3-213ENST00000541953 HOOK2Q96ED9 719 aa19.28■□□□□ 0.68
CLSTN3-213ENST00000541953 DDX4Q9NQI0 724 aaKnown RBP19.28■□□□□ 0.68
CLSTN3-213ENST00000541953 CEP126Q9P2H0 1117 aa19.28■□□□□ 0.68
CLSTN3-213ENST00000541953 DOCK1Q14185 1865 aa19.28■□□□□ 0.68
CLSTN3-213ENST00000541953 GAKO14976 1311 aa19.27■□□□□ 0.68
CLSTN3-213ENST00000541953 OSBPP22059 807 aa19.27■□□□□ 0.68
CLSTN3-213ENST00000541953 PSMC4P43686 418 aa19.27■□□□□ 0.68
CLSTN3-213ENST00000541953 NBPF11Q86T75 865 aa19.27■□□□□ 0.68
CLSTN3-213ENST00000541953 CCDC84Q86UT8 332 aaPredicted RBP19.27■□□□□ 0.68
CLSTN3-213ENST00000541953 TNNQ9UQP3 1299 aa19.27■□□□□ 0.68
CLSTN3-213ENST00000541953 DDTLA6NHG4 134 aaPredicted RBP19.26■□□□□ 0.67
CLSTN3-213ENST00000541953 IL15P40933 162 aaPredicted RBP19.26■□□□□ 0.67
CLSTN3-213ENST00000541953 TIMM10P62072 90 aa19.26■□□□□ 0.67
CLSTN3-213ENST00000541953 GCC1Q96CN9 775 aa19.26■□□□□ 0.67
CLSTN3-213ENST00000541953 COPRSQ9NQ92 184 aa19.26■□□□□ 0.67
CLSTN3-213ENST00000541953 SRRDQ9UH36 339 aa19.26■□□□□ 0.67
CLSTN3-213ENST00000541953 DENND2AQ9ULE3 1009 aa19.26■□□□□ 0.67
CLSTN3-213ENST00000541953 WDHD1O75717 1129 aaPredicted RBP19.25■□□□□ 0.67
CLSTN3-213ENST00000541953 BCRP11274 1271 aa19.25■□□□□ 0.67
CLSTN3-213ENST00000541953 FXR1P51114 621 aaKnown RBP eCLIP19.25■□□□□ 0.67
CLSTN3-213ENST00000541953 KIF22Q14807 665 aa19.25■□□□□ 0.67
CLSTN3-213ENST00000541953 ARHGEF6Q15052 776 aa19.25■□□□□ 0.67
CLSTN3-213ENST00000541953 FBXO3Q9UK99 471 aa19.25■□□□□ 0.67
CLSTN3-213ENST00000541953 COLQQ9Y215 455 aaPredicted RBP19.25■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms