RNA–Protein interactions for RNA: ENST00000541351.3

YBX3-211, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-211ENST00000541351 UHRF1Q96T88 793 aaPredicted RBP12.19□□□□□ -0.46
YBX3-211ENST00000541351 GREM2Q9H772 168 aa12.19□□□□□ -0.46
YBX3-211ENST00000541351 DLG5Q8TDM6 1919 aa12.19□□□□□ -0.46
YBX3-211ENST00000541351 MUC3AQ02505 3323 aa12.18□□□□□ -0.46
YBX3-211ENST00000541351 MFSD14BQ5SR56 506 aa12.18□□□□□ -0.46
YBX3-211ENST00000541351 FKBP1CQ5VVH2 108 aa12.18□□□□□ -0.46
YBX3-211ENST00000541351 ADAMTS19Q8TE59 1207 aa12.18□□□□□ -0.46
YBX3-211ENST00000541351 THEGQ9P2T0 379 aa12.18□□□□□ -0.46
YBX3-211ENST00000541351 CYP2C8P10632 490 aa12.17□□□□□ -0.46
YBX3-211ENST00000541351 MRPS5P82675 430 aaKnown RBP12.17□□□□□ -0.46
YBX3-211ENST00000541351 TRMT44Q8IYL2 757 aaKnown RBP12.17□□□□□ -0.46
YBX3-211ENST00000541351 PNMA3Q9UL41 463 aa12.17□□□□□ -0.46
YBX3-211ENST00000541351 RPAP1Q9BWH6 1393 aaPredicted RBP12.17□□□□□ -0.46
YBX3-211ENST00000541351 MGAMO43451 1857 aa12.17□□□□□ -0.46
YBX3-211ENST00000541351 NCOR1O75376 2440 aa12.16□□□□□ -0.46
YBX3-211ENST00000541351 KLRK1P26718 216 aa12.16□□□□□ -0.46
YBX3-211ENST00000541351 RIPK4P57078 832 aa12.16□□□□□ -0.46
YBX3-211ENST00000541351 HDLBPQ00341 1268 aaKnown RBP12.16□□□□□ -0.46
YBX3-211ENST00000541351 CHRNDQ07001 517 aa12.16□□□□□ -0.46
YBX3-211ENST00000541351 NEXNQ0ZGT2 675 aa12.16□□□□□ -0.46
YBX3-211ENST00000541351 ASB2Q96Q27 587 aa12.16□□□□□ -0.46
YBX3-211ENST00000541351 TSPYL2Q9H2G4 693 aaPredicted RBP12.16□□□□□ -0.46
YBX3-211ENST00000541351 ARAP2Q8WZ64 1704 aa12.16□□□□□ -0.46
YBX3-211ENST00000541351 PFASO15067 1338 aa12.15□□□□□ -0.46
YBX3-211ENST00000541351 CLSPNQ9HAW4 1339 aa12.15□□□□□ -0.46
YBX3-211ENST00000541351 DDX60LQ5H9U9 1706 aaKnown RBP12.15□□□□□ -0.46
YBX3-211ENST00000541351 COL6A1P12109 1028 aa12.15□□□□□ -0.46
YBX3-211ENST00000541351 PPP2R1AP30153 589 aa12.15□□□□□ -0.46
YBX3-211ENST00000541351 CRKP46108 304 aa12.15□□□□□ -0.46
YBX3-211ENST00000541351 FAM110CQ1W6H9 321 aa12.15□□□□□ -0.46
YBX3-211ENST00000541351 CDAN1Q8IWY9 1227 aa12.15□□□□□ -0.46
YBX3-211ENST00000541351 PLEKHF1Q96S99 279 aa12.15□□□□□ -0.46
YBX3-211ENST00000541351 GAS2L1Q99501 681 aaPredicted RBP12.15□□□□□ -0.46
YBX3-211ENST00000541351 METTL22Q9BUU2 404 aaPredicted RBP12.15□□□□□ -0.46
YBX3-211ENST00000541351 PRUNE2Q8WUY3 3088 aa12.14□□□□□ -0.47
YBX3-211ENST00000541351 ITGA6P23229 1130 aa12.14□□□□□ -0.47
YBX3-211ENST00000541351 LRRC26Q2I0M4 334 aa12.14□□□□□ -0.47
YBX3-211ENST00000541351 NOL9Q5SY16 702 aaKnown RBP12.14□□□□□ -0.47
YBX3-211ENST00000541351 TEKT1Q969V4 418 aa12.14□□□□□ -0.47
YBX3-211ENST00000541351 TTYH1Q9H313 450 aaPredicted RBP12.14□□□□□ -0.47
YBX3-211ENST00000541351 EYSQ5T1H1 3165 aa12.14□□□□□ -0.47
YBX3-211ENST00000541351 AOX1Q06278 1338 aa12.13□□□□□ -0.47
YBX3-211ENST00000541351 GCLCP48506 637 aaPredicted RBP12.13□□□□□ -0.47
YBX3-211ENST00000541351 TBC1D22AQ8WUA7 517 aa12.13□□□□□ -0.47
YBX3-211ENST00000541351 PICK1Q9NRD5 415 aa12.13□□□□□ -0.47
YBX3-211ENST00000541351 MAST3O60307 1309 aa12.12□□□□□ -0.47
YBX3-211ENST00000541351 A0A0G2JLL6 359 aaPredicted RBP12.12□□□□□ -0.47
YBX3-211ENST00000541351 CHL1O00533 1208 aa12.12□□□□□ -0.47
YBX3-211ENST00000541351 INPP5BP32019 993 aa12.12□□□□□ -0.47
YBX3-211ENST00000541351 PABPC4Q13310 644 aaKnown RBP eCLIP12.12□□□□□ -0.47
YBX3-211ENST00000541351 MOGSQ13724 837 aa12.12□□□□□ -0.47
YBX3-211ENST00000541351 SHHQ15465 462 aa12.12□□□□□ -0.47
YBX3-211ENST00000541351 AAK1Q2M2I8 961 aa12.12□□□□□ -0.47
YBX3-211ENST00000541351 AKNAD1Q5T1N1 836 aa12.12□□□□□ -0.47
YBX3-211ENST00000541351 GPAT2Q6NUI2 795 aa12.12□□□□□ -0.47
YBX3-211ENST00000541351 GADL1Q6ZQY3 521 aa12.12□□□□□ -0.47
YBX3-211ENST00000541351 PRRT2Q7Z6L0 340 aaPredicted RBP12.12□□□□□ -0.47
YBX3-211ENST00000541351 JARID2Q92833 1246 aaPredicted RBP12.12□□□□□ -0.47
YBX3-211ENST00000541351 P2RX7Q99572 595 aaKnown RBP12.12□□□□□ -0.47
YBX3-211ENST00000541351 ANKRD18BA2A2Z9 1011 aa12.11□□□□□ -0.47
YBX3-211ENST00000541351 PRKAR2AP13861 404 aaKnown RBP12.11□□□□□ -0.47
YBX3-211ENST00000541351 TMEM31Q5JXX7 168 aa12.11□□□□□ -0.47
YBX3-211ENST00000541351 MIGA2Q7L4E1 593 aa12.11□□□□□ -0.47
YBX3-211ENST00000541351 ANKRD13CQ8N6S4 541 aa12.11□□□□□ -0.47
YBX3-211ENST00000541351 SOCS4Q8WXH5 440 aa12.11□□□□□ -0.47
YBX3-211ENST00000541351 MRIQ9BWK5 157 aa12.11□□□□□ -0.47
YBX3-211ENST00000541351 ZNF112Q9UJU3 913 aa12.11□□□□□ -0.47
YBX3-211ENST00000541351 JAG2Q9Y219 1238 aa12.11□□□□□ -0.47
YBX3-211ENST00000541351 LAS1LQ9Y4W2 734 aaKnown RBP12.11□□□□□ -0.47
YBX3-211ENST00000541351 MYH3P11055 1940 aa12.1□□□□□ -0.47
YBX3-211ENST00000541351 SPEF2Q9C093 1822 aa12.1□□□□□ -0.47
YBX3-211ENST00000541351 MSCO60682 206 aa12.1□□□□□ -0.47
YBX3-211ENST00000541351 XRCC5P13010 732 aaKnown RBP12.1□□□□□ -0.47
YBX3-211ENST00000541351 MAP3K21Q5TCX8 1036 aa12.1□□□□□ -0.47
YBX3-211ENST00000541351 DUSP27Q5VZP5 1158 aa12.1□□□□□ -0.47
YBX3-211ENST00000541351 ALYREFQ86V81 257 aaKnown RBP12.1□□□□□ -0.47
YBX3-211ENST00000541351 SENP6Q9GZR1 1112 aaPredicted RBP12.1□□□□□ -0.47
YBX3-211ENST00000541351 ZHX2Q9Y6X8 837 aa12.1□□□□□ -0.47
YBX3-211ENST00000541351 TAF5LO75529 589 aa12.09□□□□□ -0.47
YBX3-211ENST00000541351 ZKSCAN1P17029 563 aaPredicted RBP12.09□□□□□ -0.47
YBX3-211ENST00000541351 PDE3AQ14432 1141 aa12.09□□□□□ -0.47
YBX3-211ENST00000541351 KRT24Q2M2I5 525 aa12.09□□□□□ -0.47
YBX3-211ENST00000541351 VPS37DQ86XT2 251 aa12.09□□□□□ -0.47
YBX3-211ENST00000541351 USP38Q8NB14 1042 aa12.09□□□□□ -0.47
YBX3-211ENST00000541351 ZDHHC15Q96MV8 337 aa12.09□□□□□ -0.47
YBX3-211ENST00000541351 NUDT12Q9BQG2 462 aa12.09□□□□□ -0.47
YBX3-211ENST00000541351 LRFN3Q9BTN0 628 aa12.09□□□□□ -0.47
YBX3-211ENST00000541351 PLA2G12BQ9BX93 195 aa12.09□□□□□ -0.47
YBX3-211ENST00000541351 AGTPBP1Q9UPW5 1226 aa12.09□□□□□ -0.47
YBX3-211ENST00000541351 FRAT2O75474 233 aaPredicted RBP12.08□□□□□ -0.48
YBX3-211ENST00000541351 HIBADHP31937 336 aaKnown RBP12.08□□□□□ -0.48
YBX3-211ENST00000541351 CACNB3P54284 484 aa12.08□□□□□ -0.48
YBX3-211ENST00000541351 UBE3BQ7Z3V4 1068 aa12.08□□□□□ -0.48
YBX3-211ENST00000541351 SCYL3Q8IZE3 742 aa12.08□□□□□ -0.48
YBX3-211ENST00000541351 TDRD7Q8NHU6 1098 aaKnown RBP12.08□□□□□ -0.48
YBX3-211ENST00000541351 FAM151AQ8WW52 585 aa12.08□□□□□ -0.48
YBX3-211ENST00000541351 RNPC3Q96LT9 517 aaKnown RBP12.08□□□□□ -0.48
YBX3-211ENST00000541351 SUGT1Q9Y2Z0 365 aa12.08□□□□□ -0.48
YBX3-211ENST00000541351 LAMA2P24043 3122 aaKnown RBP12.07□□□□□ -0.48
YBX3-211ENST00000541351 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms