RNA–Protein interactions for RNA: ENST00000541286.5

SFSWAP-210, Transcript of splicing factor SWAP, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SFSWAP, Length 3,219 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-210ENST00000541286 KCNQ5Q9NR82 932 aa16.76■□□□□ 0.27
SFSWAP-210ENST00000541286 H3BQV1 296 aa16.76■□□□□ 0.27
SFSWAP-210ENST00000541286 PSMA5P28066 241 aa16.76■□□□□ 0.27
SFSWAP-210ENST00000541286 IFFO2Q5TF58 517 aa16.76■□□□□ 0.27
SFSWAP-210ENST00000541286 CCDC186Q7Z3E2 898 aa16.76■□□□□ 0.27
SFSWAP-210ENST00000541286 CDC5LQ99459 802 aaKnown RBP16.76■□□□□ 0.27
SFSWAP-210ENST00000541286 NUP62CLQ9H1M0 184 aa16.76■□□□□ 0.27
SFSWAP-210ENST00000541286 CRY2Q49AN0 593 aa16.75■□□□□ 0.27
SFSWAP-210ENST00000541286 TNMDQ9H2S6 317 aa16.75■□□□□ 0.27
SFSWAP-210ENST00000541286 GRAPQ13588 217 aa16.75■□□□□ 0.27
SFSWAP-210ENST00000541286 GRAPLQ8TC17 118 aaPredicted RBP16.75■□□□□ 0.27
SFSWAP-210ENST00000541286 GOLIM4O00461 696 aa16.75■□□□□ 0.27
SFSWAP-210ENST00000541286 MXD3Q9BW11 206 aa16.75■□□□□ 0.27
SFSWAP-210ENST00000541286 POLLQ9UGP5 575 aa16.75■□□□□ 0.27
SFSWAP-210ENST00000541286 ZFP91Q96JP5 570 aaPredicted RBP16.74■□□□□ 0.27
SFSWAP-210ENST00000541286 C6orf229H3BNL8 230 aa16.74■□□□□ 0.27
SFSWAP-210ENST00000541286 IRX5P78411 483 aaPredicted RBP16.74■□□□□ 0.27
SFSWAP-210ENST00000541286 MAP3K11Q16584 847 aa16.74■□□□□ 0.27
SFSWAP-210ENST00000541286 DOK7Q18PE1 504 aa16.74■□□□□ 0.27
SFSWAP-210ENST00000541286 MTFR1LQ9H019 292 aa16.74■□□□□ 0.27
SFSWAP-210ENST00000541286 BSDC1Q9NW68 430 aaPredicted RBP16.74■□□□□ 0.27
SFSWAP-210ENST00000541286 COL11A2P13942 1736 aaPredicted RBP16.74■□□□□ 0.27
SFSWAP-210ENST00000541286 KCNA3P22001 575 aa16.74■□□□□ 0.27
SFSWAP-210ENST00000541286 UVSSAQ2YD98 709 aa16.74■□□□□ 0.27
SFSWAP-210ENST00000541286 H0YIN7 160 aa16.73■□□□□ 0.27
SFSWAP-210ENST00000541286 GUCY1B3Q02153 619 aa16.73■□□□□ 0.27
SFSWAP-210ENST00000541286 TRIM5Q9C035 493 aa16.73■□□□□ 0.27
SFSWAP-210ENST00000541286 SLX4Q8IY92 1834 aa16.73■□□□□ 0.27
SFSWAP-210ENST00000541286 A0A087WWV3 80 aa16.73■□□□□ 0.27
SFSWAP-210ENST00000541286 TNNT1P13805 278 aa16.73■□□□□ 0.27
SFSWAP-210ENST00000541286 MCAMP43121 646 aa16.73■□□□□ 0.27
SFSWAP-210ENST00000541286 ZAP70P43403 619 aa16.73■□□□□ 0.27
SFSWAP-210ENST00000541286 CCDC102BQ68D86 513 aa16.73■□□□□ 0.27
SFSWAP-210ENST00000541286 TMEM87AQ8NBN3 555 aa16.73■□□□□ 0.27
SFSWAP-210ENST00000541286 MAP4K1Q92918 833 aa16.73■□□□□ 0.27
SFSWAP-210ENST00000541286 SPTLC3Q9NUV7 552 aa16.73■□□□□ 0.27
SFSWAP-210ENST00000541286 RGPD3A6NKT7 1758 aaPredicted RBP16.72■□□□□ 0.27
SFSWAP-210ENST00000541286 RGPD4Q7Z3J3 1758 aa16.72■□□□□ 0.27
SFSWAP-210ENST00000541286 UFL1O94874 794 aa16.72■□□□□ 0.27
SFSWAP-210ENST00000541286 PPEF1O14829 653 aaPredicted RBP16.72■□□□□ 0.27
SFSWAP-210ENST00000541286 ANO6Q4KMQ2 910 aa16.72■□□□□ 0.27
SFSWAP-210ENST00000541286 CHST3Q7LGC8 479 aa16.72■□□□□ 0.27
SFSWAP-210ENST00000541286 CCT2P78371 535 aaKnown RBP16.72■□□□□ 0.27
SFSWAP-210ENST00000541286 RBM17Q96I25 401 aaKnown RBP16.72■□□□□ 0.27
SFSWAP-210ENST00000541286 TYRO3Q06418 890 aa16.71■□□□□ 0.27
SFSWAP-210ENST00000541286 ANKRD7Q92527 254 aa16.71■□□□□ 0.27
SFSWAP-210ENST00000541286 BRF1Q92994 677 aa16.71■□□□□ 0.27
SFSWAP-210ENST00000541286 SGIP1Q9BQI5 828 aa16.71■□□□□ 0.27
SFSWAP-210ENST00000541286 TRMT1Q9NXH9 659 aaKnown RBP16.71■□□□□ 0.27
SFSWAP-210ENST00000541286 CIAO1O76071 339 aa16.71■□□□□ 0.27
SFSWAP-210ENST00000541286 PDCP20941 246 aa16.71■□□□□ 0.27
SFSWAP-210ENST00000541286 GRIK5Q16478 980 aa16.71■□□□□ 0.27
SFSWAP-210ENST00000541286 TPD52L1Q16890 204 aaPredicted RBP16.71■□□□□ 0.27
SFSWAP-210ENST00000541286 OGFRQ9NZT2 677 aa16.71■□□□□ 0.27
SFSWAP-210ENST00000541286 BCS1LQ9Y276 419 aa16.71■□□□□ 0.27
SFSWAP-210ENST00000541286 ZNF609O15014 1411 aa16.71■□□□□ 0.27
SFSWAP-210ENST00000541286 HIP1O00291 1037 aa16.7■□□□□ 0.26
SFSWAP-210ENST00000541286 EPB41L2O43491 1005 aaKnown RBP16.7■□□□□ 0.26
SFSWAP-210ENST00000541286 RPS6KB1P23443 525 aa16.7■□□□□ 0.26
SFSWAP-210ENST00000541286 RASGRF1Q13972 1273 aa16.7■□□□□ 0.26
SFSWAP-210ENST00000541286 ARID5BQ14865 1188 aa16.7■□□□□ 0.26
SFSWAP-210ENST00000541286 WASHC4Q2M389 1173 aa16.7■□□□□ 0.26
SFSWAP-210ENST00000541286 TTC39AQ5SRH9 613 aa16.7■□□□□ 0.26
SFSWAP-210ENST00000541286 FHDC1Q9C0D6 1143 aaPredicted RBP16.7■□□□□ 0.26
SFSWAP-210ENST00000541286 CTNNA3Q9UI47 895 aa16.7■□□□□ 0.26
SFSWAP-210ENST00000541286 SLFN14P0C7P3 912 aa16.7■□□□□ 0.26
SFSWAP-210ENST00000541286 PUM3Q15397 648 aaKnown RBP16.7■□□□□ 0.26
SFSWAP-210ENST00000541286 Q6ZUG5 572 aa16.7■□□□□ 0.26
SFSWAP-210ENST00000541286 ERCC4Q92889 916 aaPredicted RBP16.7■□□□□ 0.26
SFSWAP-210ENST00000541286 DNAJC25Q9H1X3 360 aa16.7■□□□□ 0.26
SFSWAP-210ENST00000541286 IFIT1P09914 478 aaKnown RBP16.7■□□□□ 0.26
SFSWAP-210ENST00000541286 FGFR2P21802 821 aa16.7■□□□□ 0.26
SFSWAP-210ENST00000541286 POLD1P28340 1107 aa16.7■□□□□ 0.26
SFSWAP-210ENST00000541286 PDE6BP35913 854 aa16.7■□□□□ 0.26
SFSWAP-210ENST00000541286 FAM84BQ96KN1 310 aaPredicted RBP16.7■□□□□ 0.26
SFSWAP-210ENST00000541286 TM6SF1Q9BZW5 370 aa16.7■□□□□ 0.26
SFSWAP-210ENST00000541286 FTOQ9C0B1 505 aaKnown RBP eCLIP16.7■□□□□ 0.26
SFSWAP-210ENST00000541286 DBNDD1Q9H9R9 158 aa16.7■□□□□ 0.26
SFSWAP-210ENST00000541286 ZNF804BA4D1E1 1349 aa16.69■□□□□ 0.26
SFSWAP-210ENST00000541286 NR1I2O75469 434 aa16.69■□□□□ 0.26
SFSWAP-210ENST00000541286 TOB2Q14106 344 aaPredicted RBP16.69■□□□□ 0.26
SFSWAP-210ENST00000541286 MASTLQ96GX5 879 aa16.69■□□□□ 0.26
SFSWAP-210ENST00000541286 ABCF2Q9UG63 623 aa16.69■□□□□ 0.26
SFSWAP-210ENST00000541286 MYO5AQ9Y4I1 1855 aaKnown RBP16.69■□□□□ 0.26
SFSWAP-210ENST00000541286 VPS37DQ86XT2 251 aa16.68■□□□□ 0.26
SFSWAP-210ENST00000541286 RAB11FIP4Q86YS3 637 aa16.68■□□□□ 0.26
SFSWAP-210ENST00000541286 NEK1Q96PY6 1258 aa16.68■□□□□ 0.26
SFSWAP-210ENST00000541286 GOLGA6L6A8MZA4 724 aa16.68■□□□□ 0.26
SFSWAP-210ENST00000541286 NPR1P16066 1061 aa16.68■□□□□ 0.26
SFSWAP-210ENST00000541286 ANKRD1Q15327 319 aa16.68■□□□□ 0.26
SFSWAP-210ENST00000541286 MROH5Q6ZUA9 1318 aa16.67■□□□□ 0.26
SFSWAP-210ENST00000541286 KLRG2A4D1S0 409 aaPredicted RBP16.67■□□□□ 0.26
SFSWAP-210ENST00000541286 CCDC112Q8NEF3 446 aa16.67■□□□□ 0.26
SFSWAP-210ENST00000541286 FAM200AQ8TCP9 573 aa16.67■□□□□ 0.26
SFSWAP-210ENST00000541286 LEO1Q8WVC0 666 aaPredicted RBP16.67■□□□□ 0.26
SFSWAP-210ENST00000541286 PIH1D3Q9NQM4 214 aaKnown RBP16.67■□□□□ 0.26
SFSWAP-210ENST00000541286 ZNF277Q9NRM2 450 aaPredicted RBP16.67■□□□□ 0.26
SFSWAP-210ENST00000541286 F8W031 263 aaPredicted RBP16.67■□□□□ 0.26
SFSWAP-210ENST00000541286 IDH1O75874 414 aaKnown RBP16.67■□□□□ 0.26
SFSWAP-210ENST00000541286 SLC4A8Q2Y0W8 1093 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 87.7 ms