RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 IL25Q9H293 177 aa11.29□□□□□ -0.6
DDX55-208ENST00000541259 A0A0D9SFI3 127 aa11.28□□□□□ -0.6
DDX55-208ENST00000541259 ATMINO43313 823 aaPredicted RBP11.28□□□□□ -0.6
DDX55-208ENST00000541259 EIF6P56537 245 aaKnown RBP11.28□□□□□ -0.6
DDX55-208ENST00000541259 FKBP1AP62942 108 aaKnown RBP11.28□□□□□ -0.6
DDX55-208ENST00000541259 MAP3K12Q12852 859 aa11.28□□□□□ -0.6
DDX55-208ENST00000541259 DIXDC1Q155Q3 683 aa11.28□□□□□ -0.6
DDX55-208ENST00000541259 C8orf34Q49A92 452 aa11.28□□□□□ -0.6
DDX55-208ENST00000541259 SPTY2D1Q68D10 685 aaPredicted RBP11.28□□□□□ -0.6
DDX55-208ENST00000541259 RSBN1LQ6PCB5 846 aaPredicted RBP11.28□□□□□ -0.6
DDX55-208ENST00000541259 CWC27Q6UX04 472 aaKnown RBP11.28□□□□□ -0.6
DDX55-208ENST00000541259 ADGRA1Q86SQ6 560 aa11.28□□□□□ -0.6
DDX55-208ENST00000541259 KIAA0825Q8IV33 1275 aa11.28□□□□□ -0.6
DDX55-208ENST00000541259 ZGPATQ8N5A5 531 aaKnown RBP11.28□□□□□ -0.6
DDX55-208ENST00000541259 GMLQ99445 158 aa11.28□□□□□ -0.6
DDX55-208ENST00000541259 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.28□□□□□ -0.61e-7■■■□□ 16
DDX55-208ENST00000541259 GJA3Q9Y6H8 435 aa11.28□□□□□ -0.6
DDX55-208ENST00000541259 ZNF532Q9HCE3 1301 aa11.28□□□□□ -0.6
DDX55-208ENST00000541259 ECM29Q5VYK3 1845 aa11.28□□□□□ -0.6
DDX55-208ENST00000541259 SHTN1A0MZ66 631 aa11.27□□□□□ -0.61
DDX55-208ENST00000541259 CYP7A1P22680 504 aa11.27□□□□□ -0.61
DDX55-208ENST00000541259 SCNN1DP51172 638 aa11.27□□□□□ -0.61
DDX55-208ENST00000541259 ZMYM1Q5SVZ6 1142 aa11.27□□□□□ -0.61
DDX55-208ENST00000541259 ASTLQ6HA08 431 aaPredicted RBP11.27□□□□□ -0.61
DDX55-208ENST00000541259 NAA16Q6N069 864 aaPredicted RBP11.27□□□□□ -0.61
DDX55-208ENST00000541259 ZSCAN25Q6NSZ9 544 aa11.27□□□□□ -0.61
DDX55-208ENST00000541259 CCDC129Q6ZRS4 1044 aa11.27□□□□□ -0.61
DDX55-208ENST00000541259 DZIP1Q86YF9 867 aaKnown RBP11.27□□□□□ -0.61
DDX55-208ENST00000541259 FBXO22Q8NEZ5 403 aa11.27□□□□□ -0.61
DDX55-208ENST00000541259 OSBP2Q969R2 916 aa11.27□□□□□ -0.61
DDX55-208ENST00000541259 PUS7LQ9H0K6 701 aaKnown RBP11.27□□□□□ -0.61
DDX55-208ENST00000541259 DIAPH3Q9NSV4 1193 aa11.27□□□□□ -0.61
DDX55-208ENST00000541259 TTF2Q9UNY4 1162 aaKnown RBP11.27□□□□□ -0.61
DDX55-208ENST00000541259 RFX7Q2KHR2 1363 aa11.27□□□□□ -0.61
DDX55-208ENST00000541259 POLR2AP24928 1970 aaKnown RBP11.27□□□□□ -0.61
DDX55-208ENST00000541259 M0R2C6 588 aa11.26□□□□□ -0.61
DDX55-208ENST00000541259 SEC24BO95487 1268 aa11.26□□□□□ -0.61
DDX55-208ENST00000541259 ZFYP08048 801 aaPredicted RBP11.26□□□□□ -0.61
DDX55-208ENST00000541259 TNIP1Q15025 636 aa11.26□□□□□ -0.61
DDX55-208ENST00000541259 UBE3CQ15386 1083 aa11.26□□□□□ -0.61
DDX55-208ENST00000541259 PCDHAC2Q9Y5I4 1007 aa11.26□□□□□ -0.61
DDX55-208ENST00000541259 BAZ2AQ9UIF9 1905 aaKnown RBP11.26□□□□□ -0.61
DDX55-208ENST00000541259 HIP1O00291 1037 aa11.25□□□□□ -0.61
DDX55-208ENST00000541259 DDNO94850 711 aaPredicted RBP11.25□□□□□ -0.61
DDX55-208ENST00000541259 GMPSP49915 693 aaPredicted RBP11.25□□□□□ -0.61
DDX55-208ENST00000541259 DYNLL1P63167 89 aaKnown RBP11.25□□□□□ -0.61
DDX55-208ENST00000541259 ZNF589Q86UQ0 364 aaPredicted RBP11.25□□□□□ -0.61
DDX55-208ENST00000541259 MIGA1Q8NAN2 632 aa11.25□□□□□ -0.61
DDX55-208ENST00000541259 AGBL3Q8NEM8 1001 aa11.25□□□□□ -0.61
DDX55-208ENST00000541259 APPBP2Q92624 585 aa11.25□□□□□ -0.61
DDX55-208ENST00000541259 ESYT1Q9BSJ8 1104 aa11.25□□□□□ -0.61
DDX55-208ENST00000541259 HELLSQ9NRZ9 838 aa11.25□□□□□ -0.61
DDX55-208ENST00000541259 SUGT1Q9Y2Z0 365 aa11.25□□□□□ -0.61
DDX55-208ENST00000541259 MAST3O60307 1309 aa11.25□□□□□ -0.61
DDX55-208ENST00000541259 FOCADQ5VW36 1801 aa11.25□□□□□ -0.61
DDX55-208ENST00000541259 SGSM2O43147 1006 aa11.24□□□□□ -0.61
DDX55-208ENST00000541259 CRKP46108 304 aa11.24□□□□□ -0.61
DDX55-208ENST00000541259 LRRFIP1Q32MZ4 808 aaKnown RBP11.24□□□□□ -0.61
DDX55-208ENST00000541259 MCMDC2Q4G0Z9 681 aa11.24□□□□□ -0.61
DDX55-208ENST00000541259 TICAM2Q86XR7 235 aa11.24□□□□□ -0.61
DDX55-208ENST00000541259 ARMT1Q9H993 441 aa11.24□□□□□ -0.61
DDX55-208ENST00000541259 DAGLAQ9Y4D2 1042 aa11.24□□□□□ -0.61
DDX55-208ENST00000541259 MROH7-TTC4A0A0A0MT08 1334 aa11.24□□□□□ -0.61
DDX55-208ENST00000541259 MYO3BQ8WXR4 1341 aa11.24□□□□□ -0.61
DDX55-208ENST00000541259 MYH1P12882 1939 aa11.23□□□□□ -0.61
DDX55-208ENST00000541259 MAGEB6P1A0A0J9YX57 407 aa11.23□□□□□ -0.61
DDX55-208ENST00000541259 MBD4O95243 580 aa11.23□□□□□ -0.61
DDX55-208ENST00000541259 LDHCP07864 332 aa11.23□□□□□ -0.61
DDX55-208ENST00000541259 USP17L8P0C7I0 530 aa11.23□□□□□ -0.61
DDX55-208ENST00000541259 GSTO1P78417 241 aa11.23□□□□□ -0.61
DDX55-208ENST00000541259 CASC1Q6TDU7 716 aa11.23□□□□□ -0.61
DDX55-208ENST00000541259 HHIPL2Q6UWX4 724 aa11.23□□□□□ -0.61
DDX55-208ENST00000541259 GPC2Q8N158 579 aa11.23□□□□□ -0.61
DDX55-208ENST00000541259 LCORLQ8N3X6 602 aa11.23□□□□□ -0.61
DDX55-208ENST00000541259 RUFY2Q8WXA3 655 aa11.23□□□□□ -0.61
DDX55-208ENST00000541259 FAM163AQ96GL9 167 aaPredicted RBP11.23□□□□□ -0.61
DDX55-208ENST00000541259 STRBPQ96SI9 672 aaKnown RBP11.23□□□□□ -0.61
DDX55-208ENST00000541259 RIOK1Q9BRS2 568 aaKnown RBP11.23□□□□□ -0.61
DDX55-208ENST00000541259 BACH2Q9BYV9 841 aa11.23□□□□□ -0.61
DDX55-208ENST00000541259 AATFQ9NY61 560 aaKnown RBP eCLIP11.23□□□□□ -0.61
DDX55-208ENST00000541259 GAKO14976 1311 aa11.23□□□□□ -0.61
DDX55-208ENST00000541259 GPR75-ASB3A0A0A6YYF3 556 aa11.22□□□□□ -0.61
DDX55-208ENST00000541259 GPAA1O43292 621 aa11.22□□□□□ -0.61
DDX55-208ENST00000541259 PRKAB2O43741 272 aa11.22□□□□□ -0.61
DDX55-208ENST00000541259 IGSF3O75054 1194 aa11.22□□□□□ -0.61
DDX55-208ENST00000541259 EGFRP00533 1210 aa11.22□□□□□ -0.61
DDX55-208ENST00000541259 RPS12P25398 132 aaKnown RBP11.22□□□□□ -0.61
DDX55-208ENST00000541259 BTDP43251 543 aa11.22□□□□□ -0.61
DDX55-208ENST00000541259 RBM5P52756 815 aaKnown RBP eCLIP11.22□□□□□ -0.61
DDX55-208ENST00000541259 HDLBPQ00341 1268 aaKnown RBP11.22□□□□□ -0.61
DDX55-208ENST00000541259 PTH1RQ03431 593 aa11.22□□□□□ -0.61
DDX55-208ENST00000541259 CFAP100Q494V2 611 aa11.22□□□□□ -0.61
DDX55-208ENST00000541259 IER5LQ5T953 404 aa11.22□□□□□ -0.61
DDX55-208ENST00000541259 VPS53Q5VIR6 699 aa11.22□□□□□ -0.61
DDX55-208ENST00000541259 APOBEC3HQ6NTF7 200 aaKnown RBP11.22□□□□□ -0.61
DDX55-208ENST00000541259 MICALL2Q8IY33 904 aa11.22□□□□□ -0.61
DDX55-208ENST00000541259 SH3RF3Q8TEJ3 882 aaPredicted RBP11.22□□□□□ -0.61
DDX55-208ENST00000541259 DPF2Q92785 391 aa11.22□□□□□ -0.61
DDX55-208ENST00000541259 TEKT1Q969V4 418 aa11.22□□□□□ -0.61
DDX55-208ENST00000541259 AIDAQ96BJ3 306 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms