RNA–Protein interactions for RNA: ENST00000540475.5

SEMA4D-223, Transcript of semaphorin 4D, humanhuman

TSL 3

Gene SEMA4D, Length 826 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4D-223ENST00000540475 TMOD2Q9NZR1 351 aa16.26■□□□□ 0.19
SEMA4D-223ENST00000540475 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.26■□□□□ 0.19
SEMA4D-223ENST00000540475 CENPFP49454 3210 aa16.26■□□□□ 0.19
SEMA4D-223ENST00000540475 PNMA6EA0A0J9YXQ4 647 aa16.25■□□□□ 0.19
SEMA4D-223ENST00000540475 LDHBP07195 334 aaKnown RBP16.25■□□□□ 0.19
SEMA4D-223ENST00000540475 TFCP2Q12800 502 aa16.25■□□□□ 0.19
SEMA4D-223ENST00000540475 VGLL4Q14135 290 aa16.25■□□□□ 0.19
SEMA4D-223ENST00000540475 CDC42EP5Q6NZY7 148 aa16.25■□□□□ 0.19
SEMA4D-223ENST00000540475 ZGPATQ8N5A5 531 aaKnown RBP16.25■□□□□ 0.19
SEMA4D-223ENST00000540475 XAGE2Q96GT9 111 aa16.25■□□□□ 0.19
SEMA4D-223ENST00000540475 ELP3Q9H9T3 547 aa16.25■□□□□ 0.19
SEMA4D-223ENST00000540475 GAKO14976 1311 aa16.24■□□□□ 0.19
SEMA4D-223ENST00000540475 ZBED9Q6R2W3 1325 aa16.24■□□□□ 0.19
SEMA4D-223ENST00000540475 FKTNO75072 461 aa16.24■□□□□ 0.19
SEMA4D-223ENST00000540475 RASGRF1Q13972 1273 aa16.24■□□□□ 0.19
SEMA4D-223ENST00000540475 POLA2Q14181 598 aa16.24■□□□□ 0.19
SEMA4D-223ENST00000540475 DIXDC1Q155Q3 683 aa16.24■□□□□ 0.19
SEMA4D-223ENST00000540475 CLUAP1Q96AJ1 413 aa16.24■□□□□ 0.19
SEMA4D-223ENST00000540475 ZNF112Q9UJU3 913 aa16.24■□□□□ 0.19
SEMA4D-223ENST00000540475 SPDYE5A6NIY4 337 aa16.23■□□□□ 0.19
SEMA4D-223ENST00000540475 MVPQ14764 893 aaKnown RBP16.23■□□□□ 0.19
SEMA4D-223ENST00000540475 OTUD7BQ6GQQ9 843 aa16.23■□□□□ 0.19
SEMA4D-223ENST00000540475 SSH3Q8TE77 659 aa16.23■□□□□ 0.19
SEMA4D-223ENST00000540475 FAM198AQ9UFP1 575 aa16.23■□□□□ 0.19
SEMA4D-223ENST00000540475 CSADQ9Y600 493 aa16.23■□□□□ 0.19
SEMA4D-223ENST00000540475 SNCAIPQ9Y6H5 919 aa16.23■□□□□ 0.19
SEMA4D-223ENST00000540475 DOCK2Q92608 1830 aa16.22■□□□□ 0.19
SEMA4D-223ENST00000540475 ZBTB7BO15156 539 aaPredicted RBP16.22■□□□□ 0.19
SEMA4D-223ENST00000540475 ATP8B2P98198 1209 aa16.22■□□□□ 0.19
SEMA4D-223ENST00000540475 DCAF15Q66K64 600 aa16.22■□□□□ 0.19
SEMA4D-223ENST00000540475 IDI2Q9BXS1 227 aa16.22■□□□□ 0.19
SEMA4D-223ENST00000540475 GPR108Q9NPR9 543 aa16.22■□□□□ 0.19
SEMA4D-223ENST00000540475 RFX7Q2KHR2 1363 aa16.22■□□□□ 0.19
SEMA4D-223ENST00000540475 GTF2A2P52657 109 aa16.21■□□□□ 0.19
SEMA4D-223ENST00000540475 MAP3K10Q02779 954 aa16.21■□□□□ 0.19
SEMA4D-223ENST00000540475 NFIAQ12857 509 aa16.21■□□□□ 0.19
SEMA4D-223ENST00000540475 SPTY2D1Q68D10 685 aaPredicted RBP16.21■□□□□ 0.19
SEMA4D-223ENST00000540475 ERO1BQ86YB8 467 aa16.21■□□□□ 0.19
SEMA4D-223ENST00000540475 CNKSR2Q8WXI2 1034 aa16.21■□□□□ 0.19
SEMA4D-223ENST00000540475 BRI3BPQ8WY22 251 aa16.21■□□□□ 0.19
SEMA4D-223ENST00000540475 ZNF341Q9BYN7 854 aa16.21■□□□□ 0.19
SEMA4D-223ENST00000540475 USP40Q9NVE5 1235 aa16.21■□□□□ 0.19
SEMA4D-223ENST00000540475 HPS5Q9UPZ3 1129 aa16.21■□□□□ 0.19
SEMA4D-223ENST00000540475 ARID4AP29374 1257 aaPredicted RBP16.2■□□□□ 0.18
SEMA4D-223ENST00000540475 MLLT1Q03111 559 aaPredicted RBP16.2■□□□□ 0.18
SEMA4D-223ENST00000540475 G3BP1Q13283 466 aaKnown RBP eCLIP16.2■□□□□ 0.18
SEMA4D-223ENST00000540475 CRHR2Q13324 411 aa16.2■□□□□ 0.18
SEMA4D-223ENST00000540475 FBXO46Q6PJ61 603 aaPredicted RBP16.2■□□□□ 0.18
SEMA4D-223ENST00000540475 SLF2Q8IX21 1173 aa16.2■□□□□ 0.18
SEMA4D-223ENST00000540475 ZNF384Q8TF68 577 aa16.2■□□□□ 0.18
SEMA4D-223ENST00000540475 ZKSCAN4Q969J2 545 aaPredicted RBP16.2■□□□□ 0.18
SEMA4D-223ENST00000540475 WRNIP1Q96S55 665 aa16.2■□□□□ 0.18
SEMA4D-223ENST00000540475 ZCCHC17Q9NP64 241 aaKnown RBP16.2■□□□□ 0.18
SEMA4D-223ENST00000540475 HMG20BQ9P0W2 317 aa16.2■□□□□ 0.18
SEMA4D-223ENST00000540475 NOP58Q9Y2X3 529 aaKnown RBP16.2■□□□□ 0.18
SEMA4D-223ENST00000540475 ATRNL1Q5VV63 1379 aa16.2■□□□□ 0.18
SEMA4D-223ENST00000540475 ENTPD3O75355 529 aa16.19■□□□□ 0.18
SEMA4D-223ENST00000540475 NPM3O75607 178 aaKnown RBP16.19■□□□□ 0.18
SEMA4D-223ENST00000540475 RLBP1P12271 317 aa16.19■□□□□ 0.18
SEMA4D-223ENST00000540475 PPATQ06203 517 aa16.19■□□□□ 0.18
SEMA4D-223ENST00000540475 PPIL2Q13356 520 aa16.19■□□□□ 0.18
SEMA4D-223ENST00000540475 BRCA2P51587 3418 aa16.18■□□□□ 0.18
SEMA4D-223ENST00000540475 GPR75-ASB3A0A0A6YYF3 556 aa16.18■□□□□ 0.18
SEMA4D-223ENST00000540475 CCL15-CCL14A0A0B4J2E2 113 aa16.18■□□□□ 0.18
SEMA4D-223ENST00000540475 WDHD1O75717 1129 aaPredicted RBP16.18■□□□□ 0.18
SEMA4D-223ENST00000540475 MAP4K4O95819 1239 aaPredicted RBP16.18■□□□□ 0.18
SEMA4D-223ENST00000540475 TCP10Q12799 353 aa16.18■□□□□ 0.18
SEMA4D-223ENST00000540475 CCL15Q16663 113 aa16.18■□□□□ 0.18
SEMA4D-223ENST00000540475 NOL9Q5SY16 702 aaKnown RBP16.18■□□□□ 0.18
SEMA4D-223ENST00000540475 MIGA2Q7L4E1 593 aa16.18■□□□□ 0.18
SEMA4D-223ENST00000540475 ZFPM1Q8IX07 1006 aa16.18■□□□□ 0.18
SEMA4D-223ENST00000540475 SPATA5Q8NB90 893 aa16.18■□□□□ 0.18
SEMA4D-223ENST00000540475 OTUD5Q96G74 571 aa16.18■□□□□ 0.18
SEMA4D-223ENST00000540475 NEUROD6Q96NK8 337 aa16.18■□□□□ 0.18
SEMA4D-223ENST00000540475 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.18■□□□□ 0.18
SEMA4D-223ENST00000540475 ABCF2Q9UG63 623 aa16.18■□□□□ 0.18
SEMA4D-223ENST00000540475 MYO5AQ9Y4I1 1855 aaKnown RBP16.18■□□□□ 0.18
SEMA4D-223ENST00000540475 MROH7-TTC4A0A0A0MT08 1334 aa16.18■□□□□ 0.18
SEMA4D-223ENST00000540475 PHIPQ8WWQ0 1821 aa16.17■□□□□ 0.18
SEMA4D-223ENST00000540475 PHF20L1A8MW92 1017 aa16.17■□□□□ 0.18
SEMA4D-223ENST00000540475 IRF6O14896 467 aa16.17■□□□□ 0.18
SEMA4D-223ENST00000540475 IGSF3O75054 1194 aa16.17■□□□□ 0.18
SEMA4D-223ENST00000540475 RHBDL3P58872 404 aa16.17■□□□□ 0.18
SEMA4D-223ENST00000540475 MECOMQ03112 1051 aa16.17■□□□□ 0.18
SEMA4D-223ENST00000540475 ERICH6Q7L0X2 663 aa16.17■□□□□ 0.18
SEMA4D-223ENST00000540475 DZIP1Q86YF9 867 aaKnown RBP16.17■□□□□ 0.18
SEMA4D-223ENST00000540475 FAM43AQ8N2R8 423 aa16.17■□□□□ 0.18
SEMA4D-223ENST00000540475 ERO1AQ96HE7 468 aa16.17■□□□□ 0.18
SEMA4D-223ENST00000540475 ZNF512BQ96KM6 892 aaPredicted RBP16.17■□□□□ 0.18
SEMA4D-223ENST00000540475 CDK5RAP2Q96SN8 1893 aa16.16■□□□□ 0.18
SEMA4D-223ENST00000540475 PTPRFP10586 1907 aa16.16■□□□□ 0.18
SEMA4D-223ENST00000540475 UQCRFS1P1P0C7P4 283 aa16.16■□□□□ 0.18
SEMA4D-223ENST00000540475 CETPP11597 493 aa16.16■□□□□ 0.18
SEMA4D-223ENST00000540475 INPP5BP32019 993 aa16.16■□□□□ 0.18
SEMA4D-223ENST00000540475 MCAMP43121 646 aa16.16■□□□□ 0.18
SEMA4D-223ENST00000540475 RGS3P49796 1198 aa16.16■□□□□ 0.18
SEMA4D-223ENST00000540475 SP3Q02447 781 aa16.16■□□□□ 0.18
SEMA4D-223ENST00000540475 SH3BP5LQ7L8J4 393 aa16.16■□□□□ 0.18
SEMA4D-223ENST00000540475 OTOP1Q7RTM1 612 aa16.16■□□□□ 0.18
SEMA4D-223ENST00000540475 FTSJ3Q8IY81 847 aaKnown RBP16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms