RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 CHMP4AQ9BY43 222 aa15.73■□□□□ 0.11
CLSTN3-208ENST00000538933 TTF2Q9UNY4 1162 aaKnown RBP15.73■□□□□ 0.11
CLSTN3-208ENST00000538933 DOCK3Q8IZD9 2030 aa15.72■□□□□ 0.11
CLSTN3-208ENST00000538933 FMNL1O95466 1100 aaPredicted RBP15.72■□□□□ 0.11
CLSTN3-208ENST00000538933 NEXNQ0ZGT2 675 aa15.72■□□□□ 0.11
CLSTN3-208ENST00000538933 CCDC30Q5VVM6 783 aa15.72■□□□□ 0.11
CLSTN3-208ENST00000538933 ANKRD23Q86SG2 305 aa15.72■□□□□ 0.11
CLSTN3-208ENST00000538933 TSPYL6Q8N831 410 aa15.72■□□□□ 0.11
CLSTN3-208ENST00000538933 TDRD7Q8NHU6 1098 aaKnown RBP15.72■□□□□ 0.11
CLSTN3-208ENST00000538933 MTMR10Q9NXD2 777 aa15.72■□□□□ 0.11
CLSTN3-208ENST00000538933 RCAN3Q9UKA8 241 aa15.72■□□□□ 0.11
CLSTN3-208ENST00000538933 CACNA1FO60840 1977 aa15.71■□□□□ 0.11
CLSTN3-208ENST00000538933 PRKCZQ05513 592 aa15.71■□□□□ 0.11
CLSTN3-208ENST00000538933 GRIK5Q16478 980 aa15.71■□□□□ 0.11
CLSTN3-208ENST00000538933 MFSD14BQ5SR56 506 aa15.71■□□□□ 0.11
CLSTN3-208ENST00000538933 GABRQQ9UN88 632 aa15.71■□□□□ 0.11
CLSTN3-208ENST00000538933 ANKRD18BA2A2Z9 1011 aa15.7■□□□□ 0.1
CLSTN3-208ENST00000538933 PDHXO00330 501 aa15.7■□□□□ 0.1
CLSTN3-208ENST00000538933 BCRP11274 1271 aa15.7■□□□□ 0.1
CLSTN3-208ENST00000538933 CRKP46108 304 aa15.7■□□□□ 0.1
CLSTN3-208ENST00000538933 TNNI2P48788 182 aa15.7■□□□□ 0.1
CLSTN3-208ENST00000538933 UBXN2AP68543 259 aa15.7■□□□□ 0.1
CLSTN3-208ENST00000538933 PPATQ06203 517 aa15.7■□□□□ 0.1
CLSTN3-208ENST00000538933 G2E3Q7L622 706 aa15.7■□□□□ 0.1
CLSTN3-208ENST00000538933 WRNIP1Q96S55 665 aa15.7■□□□□ 0.1
CLSTN3-208ENST00000538933 STK31Q9BXU1 1019 aa15.7■□□□□ 0.1
CLSTN3-208ENST00000538933 BIN2Q9UBW5 565 aaPredicted RBP15.7■□□□□ 0.1
CLSTN3-208ENST00000538933 CACNB3P54284 484 aa15.69■□□□□ 0.1
CLSTN3-208ENST00000538933 FOXO4P98177 505 aa15.69■□□□□ 0.1
CLSTN3-208ENST00000538933 LRIT3Q3SXY7 679 aa15.69■□□□□ 0.1
CLSTN3-208ENST00000538933 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.69■□□□□ 0.1
CLSTN3-208ENST00000538933 SLAIN1Q8ND83 568 aa15.69■□□□□ 0.1
CLSTN3-208ENST00000538933 CRISPLD2Q9H0B8 497 aa15.69■□□□□ 0.1
CLSTN3-208ENST00000538933 KCNH4Q9UQ05 1017 aa15.69■□□□□ 0.1
CLSTN3-208ENST00000538933 VAMP4O75379 141 aa15.68■□□□□ 0.1
CLSTN3-208ENST00000538933 CAPN2P17655 700 aa15.68■□□□□ 0.1
CLSTN3-208ENST00000538933 PAK6Q9NQU5 681 aaPredicted RBP15.68■□□□□ 0.1
CLSTN3-208ENST00000538933 SMC4Q9NTJ3 1288 aa15.68■□□□□ 0.1
CLSTN3-208ENST00000538933 ADCY3O60266 1144 aa15.67■□□□□ 0.1
CLSTN3-208ENST00000538933 TFRCP02786 760 aaKnown RBP15.67■□□□□ 0.1
CLSTN3-208ENST00000538933 INPP5BP32019 993 aa15.67■□□□□ 0.1
CLSTN3-208ENST00000538933 GPAT2Q6NUI2 795 aa15.67■□□□□ 0.1
CLSTN3-208ENST00000538933 FAM83AQ86UY5 434 aa15.67■□□□□ 0.1
CLSTN3-208ENST00000538933 PAWRQ96IZ0 340 aaKnown RBP15.67■□□□□ 0.1
CLSTN3-208ENST00000538933 FAM84BQ96KN1 310 aaPredicted RBP15.67■□□□□ 0.1
CLSTN3-208ENST00000538933 DEFB118Q96PH6 123 aa15.67■□□□□ 0.1
CLSTN3-208ENST00000538933 MUC3AQ02505 3323 aa15.66■□□□□ 0.1
CLSTN3-208ENST00000538933 ELNP15502 786 aa15.66■□□□□ 0.1
CLSTN3-208ENST00000538933 GYG1P46976 350 aa15.66■□□□□ 0.1
CLSTN3-208ENST00000538933 BCAMP50895 628 aa15.66■□□□□ 0.1
CLSTN3-208ENST00000538933 HDLBPQ00341 1268 aaKnown RBP15.66■□□□□ 0.1
CLSTN3-208ENST00000538933 IFIT5Q13325 482 aaKnown RBP15.66■□□□□ 0.1
CLSTN3-208ENST00000538933 ALDH1L2Q3SY69 923 aa15.66■□□□□ 0.1
CLSTN3-208ENST00000538933 FKBP1CQ5VVH2 108 aa15.66■□□□□ 0.1
CLSTN3-208ENST00000538933 ZNF112Q9UJU3 913 aa15.66■□□□□ 0.1
CLSTN3-208ENST00000538933 TTC28Q96AY4 2481 aa15.66■□□□□ 0.1
CLSTN3-208ENST00000538933 INHAP05111 366 aa15.65■□□□□ 0.1
CLSTN3-208ENST00000538933 FLT3LGP49771 235 aa15.65■□□□□ 0.1
CLSTN3-208ENST00000538933 FCGRTP55899 365 aa15.65■□□□□ 0.1
CLSTN3-208ENST00000538933 PXYLP1Q8TE99 480 aa15.65■□□□□ 0.1
CLSTN3-208ENST00000538933 DIS3LQ8TF46 1054 aaKnown RBP15.65■□□□□ 0.1
CLSTN3-208ENST00000538933 ZNF594Q96JF6 807 aaPredicted RBP15.65■□□□□ 0.1
CLSTN3-208ENST00000538933 PLIN1O60240 522 aa15.64■□□□□ 0.09
CLSTN3-208ENST00000538933 CYP2C8P10632 490 aa15.64■□□□□ 0.09
CLSTN3-208ENST00000538933 HIBADHP31937 336 aaKnown RBP15.64■□□□□ 0.09
CLSTN3-208ENST00000538933 RARSP54136 660 aaKnown RBP15.64■□□□□ 0.09
CLSTN3-208ENST00000538933 IRF5Q13568 498 aa15.64■□□□□ 0.09
CLSTN3-208ENST00000538933 APOBEC3HQ6NTF7 200 aaKnown RBP15.64■□□□□ 0.09
CLSTN3-208ENST00000538933 MIGA2Q7L4E1 593 aa15.64■□□□□ 0.09
CLSTN3-208ENST00000538933 PHF6Q8IWS0 365 aaKnown RBP eCLIP15.64■□□□□ 0.09
CLSTN3-208ENST00000538933 LINS1Q8NG48 757 aa15.64■□□□□ 0.09
CLSTN3-208ENST00000538933 MRIQ9BWK5 157 aa15.64■□□□□ 0.09
CLSTN3-208ENST00000538933 UBE4AQ14139 1066 aa15.63■□□□□ 0.09
CLSTN3-208ENST00000538933 EPHA10Q5JZY3 1008 aa15.63■□□□□ 0.09
CLSTN3-208ENST00000538933 LDHAL6AQ6ZMR3 332 aa15.63■□□□□ 0.09
CLSTN3-208ENST00000538933 NECAB2Q7Z6G3 386 aa15.63■□□□□ 0.09
CLSTN3-208ENST00000538933 SSH1Q8WYL5 1049 aa15.63■□□□□ 0.09
CLSTN3-208ENST00000538933 FRAT1Q92837 279 aaPredicted RBP15.63■□□□□ 0.09
CLSTN3-208ENST00000538933 HOOK2Q96ED9 719 aa15.63■□□□□ 0.09
CLSTN3-208ENST00000538933 ZDHHC15Q96MV8 337 aa15.63■□□□□ 0.09
CLSTN3-208ENST00000538933 ZNF341Q9BYN7 854 aa15.63■□□□□ 0.09
CLSTN3-208ENST00000538933 ZMYND8Q9ULU4 1186 aaPredicted RBP15.63■□□□□ 0.09
CLSTN3-208ENST00000538933 SUPT16HQ9Y5B9 1047 aaKnown RBP15.63■□□□□ 0.09
CLSTN3-208ENST00000538933 PTPRFP10586 1907 aa15.62■□□□□ 0.09
CLSTN3-208ENST00000538933 AK9Q5TCS8 1911 aa15.62■□□□□ 0.09
CLSTN3-208ENST00000538933 RPAP1Q9BWH6 1393 aaPredicted RBP15.62■□□□□ 0.09
CLSTN3-208ENST00000538933 SLC4A2P04920 1241 aa15.62■□□□□ 0.09
CLSTN3-208ENST00000538933 MAGEA10P43363 369 aaPredicted RBP15.62■□□□□ 0.09
CLSTN3-208ENST00000538933 DCAF15Q66K64 600 aa15.62■□□□□ 0.09
CLSTN3-208ENST00000538933 FBXO33Q7Z6M2 555 aa15.62■□□□□ 0.09
CLSTN3-208ENST00000538933 C7orf61Q8IZ16 206 aa15.62■□□□□ 0.09
CLSTN3-208ENST00000538933 TDHQ8IZJ6 230 aa15.62■□□□□ 0.09
CLSTN3-208ENST00000538933 PARK7Q99497 189 aaKnown RBP15.62■□□□□ 0.09
CLSTN3-208ENST00000538933 KIF16BQ96L93 1317 aa15.62■□□□□ 0.09
CLSTN3-208ENST00000538933 IPO8O15397 1037 aaKnown RBP15.61■□□□□ 0.09
CLSTN3-208ENST00000538933 BCAR3O75815 825 aa15.61■□□□□ 0.09
CLSTN3-208ENST00000538933 NOL9Q5SY16 702 aaKnown RBP15.61■□□□□ 0.09
CLSTN3-208ENST00000538933 LMBR1LQ6UX01 489 aa15.61■□□□□ 0.09
CLSTN3-208ENST00000538933 DNAAF4Q8WXU2 420 aa15.61■□□□□ 0.09
CLSTN3-208ENST00000538933 TEKT1Q969V4 418 aa15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms