RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 CLSTN2Q9H4D0 955 aa7.83□□□□□ -1.16
USP28-207ENST00000538475 ZNF215Q9UL58 517 aaPredicted RBP7.83□□□□□ -1.16
USP28-207ENST00000538475 CNPY2Q9Y2B0 182 aa7.83□□□□□ -1.16
USP28-207ENST00000538475 FHOD1Q9Y613 1164 aa7.83□□□□□ -1.16
USP28-207ENST00000538475 MRVI1Q9Y6F6 885 aa7.83□□□□□ -1.16
USP28-207ENST00000538475 PHLPP2Q6ZVD8 1323 aa7.82□□□□□ -1.16
USP28-207ENST00000538475 PXDNLA1KZ92 1463 aa7.82□□□□□ -1.16
USP28-207ENST00000538475 A0A1B0GUL7 405 aa7.82□□□□□ -1.16
USP28-207ENST00000538475 VGLL3A8MV65 326 aa7.82□□□□□ -1.16
USP28-207ENST00000538475 AP5Z1O43299 807 aa7.82□□□□□ -1.16
USP28-207ENST00000538475 IL2RAP01589 272 aa7.82□□□□□ -1.16
USP28-207ENST00000538475 TUBBP07437 444 aa7.82□□□□□ -1.16
USP28-207ENST00000538475 PNMA6AP0CW24 399 aaPredicted RBP7.82□□□□□ -1.16
USP28-207ENST00000538475 VSIG8P0DPA2 414 aa7.82□□□□□ -1.16
USP28-207ENST00000538475 CENPCQ03188 943 aa7.82□□□□□ -1.16
USP28-207ENST00000538475 EML3Q32P44 896 aa7.82□□□□□ -1.16
USP28-207ENST00000538475 HDGFL1Q5TGJ6 251 aa7.82□□□□□ -1.16
USP28-207ENST00000538475 VPS53Q5VIR6 699 aa7.82□□□□□ -1.16
USP28-207ENST00000538475 ATL3Q6DD88 541 aa7.82□□□□□ -1.16
USP28-207ENST00000538475 GIMAP6Q6P9H5 292 aa7.82□□□□□ -1.16
USP28-207ENST00000538475 NRKQ7Z2Y5 1582 aa7.82□□□□□ -1.16
USP28-207ENST00000538475 FCHSD1Q86WN1 690 aa7.82□□□□□ -1.16
USP28-207ENST00000538475 PROSER2Q86WR7 435 aaPredicted RBP7.82□□□□□ -1.16
USP28-207ENST00000538475 CCAR2Q8N163 923 aaKnown RBP7.82□□□□□ -1.16
USP28-207ENST00000538475 SPC24Q8NBT2 197 aa7.82□□□□□ -1.16
USP28-207ENST00000538475 CCDC150Q8NCX0 1101 aa7.82□□□□□ -1.16
USP28-207ENST00000538475 FBXO18Q8NFZ0 1043 aa7.82□□□□□ -1.16
USP28-207ENST00000538475 KCNB2Q92953 911 aa7.82□□□□□ -1.16
USP28-207ENST00000538475 MYCBPQ99417 103 aaPredicted RBP7.82□□□□□ -1.16
USP28-207ENST00000538475 NCAPGQ9BPX3 1015 aa7.82□□□□□ -1.16
USP28-207ENST00000538475 GRIP2Q9C0E4 1043 aa7.82□□□□□ -1.16
USP28-207ENST00000538475 TNMDQ9H2S6 317 aa7.82□□□□□ -1.16
USP28-207ENST00000538475 CBX8Q9HC52 389 aa7.82□□□□□ -1.16
USP28-207ENST00000538475 CLIP2Q9UDT6 1046 aa7.82□□□□□ -1.16
USP28-207ENST00000538475 MKRN1Q9UHC7 482 aaKnown RBP7.82□□□□□ -1.16
USP28-207ENST00000538475 A0A1W2PP64 1363 aa7.82□□□□□ -1.16
USP28-207ENST00000538475 CD163L1Q9NR16 1453 aa7.81□□□□□ -1.16
USP28-207ENST00000538475 TTC21AQ8NDW8 1320 aa7.81□□□□□ -1.16
USP28-207ENST00000538475 XRN1Q8IZH2 1706 aaKnown RBP7.81□□□□□ -1.16
USP28-207ENST00000538475 YTHDC2Q9H6S0 1430 aaKnown RBP7.81□□□□□ -1.16
USP28-207ENST00000538475 RIMS2Q9UQ26 1411 aa7.81□□□□□ -1.16
USP28-207ENST00000538475 GOLGA6L9A6NEM1 432 aa7.81□□□□□ -1.16
USP28-207ENST00000538475 FAM177BA6PVY3 158 aa7.81□□□□□ -1.16
USP28-207ENST00000538475 EFCAB8A8MWE9 144 aa7.81□□□□□ -1.16
USP28-207ENST00000538475 GOLGA6L19H0YKK7 550 aa7.81□□□□□ -1.16
USP28-207ENST00000538475 MYO1BO43795 1136 aa7.81□□□□□ -1.16
USP28-207ENST00000538475 SMARCA5O60264 1052 aaPredicted RBP7.81□□□□□ -1.16
USP28-207ENST00000538475 IGSF3O75054 1194 aa7.81□□□□□ -1.16
USP28-207ENST00000538475 GUCY2CP25092 1073 aa7.81□□□□□ -1.16
USP28-207ENST00000538475 CCDC158Q5M9N0 1113 aa7.81□□□□□ -1.16
USP28-207ENST00000538475 SV2AQ7L0J3 742 aa7.81□□□□□ -1.16
USP28-207ENST00000538475 VWA5B2Q8N398 1253 aa7.81□□□□□ -1.16
USP28-207ENST00000538475 CACTINQ8WUQ7 758 aaKnown RBP7.81□□□□□ -1.16
USP28-207ENST00000538475 RUFY2Q8WXA3 655 aa7.81□□□□□ -1.16
USP28-207ENST00000538475 XAGE2Q96GT9 111 aa7.81□□□□□ -1.16
USP28-207ENST00000538475 ZSCAN10Q96SZ4 725 aaPredicted RBP7.81□□□□□ -1.16
USP28-207ENST00000538475 C1orf115Q9H7X2 142 aa7.81□□□□□ -1.16
USP28-207ENST00000538475 MTMR6Q9Y217 621 aa7.81□□□□□ -1.16
USP28-207ENST00000538475 TTC41PQ6P2S7 1318 aa7.8□□□□□ -1.16
USP28-207ENST00000538475 GOLGA6L4A6NEF3 574 aa7.8□□□□□ -1.16
USP28-207ENST00000538475 DHX16O60231 1041 aaKnown RBP7.8□□□□□ -1.16
USP28-207ENST00000538475 RAB11FIP3O75154 756 aa7.8□□□□□ -1.16
USP28-207ENST00000538475 GNAI3P08754 354 aa7.8□□□□□ -1.16
USP28-207ENST00000538475 SKILP12757 684 aa7.8□□□□□ -1.16
USP28-207ENST00000538475 MAGEA9P43362 315 aa7.8□□□□□ -1.16
USP28-207ENST00000538475 ZNF165P49910 485 aa7.8□□□□□ -1.16
USP28-207ENST00000538475 GTF2A1P52655 376 aaPredicted RBP7.8□□□□□ -1.16
USP28-207ENST00000538475 TUBB2AQ13885 445 aa7.8□□□□□ -1.16
USP28-207ENST00000538475 ANKRD1Q15327 319 aa7.8□□□□□ -1.16
USP28-207ENST00000538475 TMEM214Q6NUQ4 689 aaKnown RBP7.8□□□□□ -1.16
USP28-207ENST00000538475 RIPOR1Q6ZS17 1223 aa7.8□□□□□ -1.16
USP28-207ENST00000538475 TAS1R3Q7RTX0 852 aa7.8□□□□□ -1.16
USP28-207ENST00000538475 HDGFL2Q7Z4V5 671 aaPredicted RBP7.8□□□□□ -1.16
USP28-207ENST00000538475 SUGP1Q8IWZ8 645 aaKnown RBP7.8□□□□□ -1.16
USP28-207ENST00000538475 C16orf71Q8IYS4 520 aaPredicted RBP7.8□□□□□ -1.16
USP28-207ENST00000538475 NFATC2IPQ8NCF5 419 aa7.8□□□□□ -1.16
USP28-207ENST00000538475 MNS1Q8NEH6 495 aa7.8□□□□□ -1.16
USP28-207ENST00000538475 UBXN4Q92575 508 aa7.8□□□□□ -1.16
USP28-207ENST00000538475 CHMP4CQ96CF2 233 aa7.8□□□□□ -1.16
USP28-207ENST00000538475 GAS2L1Q99501 681 aaPredicted RBP7.8□□□□□ -1.16
USP28-207ENST00000538475 TUBB2BQ9BVA1 445 aa7.8□□□□□ -1.16
USP28-207ENST00000538475 LRRCC1Q9C099 1032 aa7.8□□□□□ -1.16
USP28-207ENST00000538475 NAT10Q9H0A0 1025 aaKnown RBP7.8□□□□□ -1.16
USP28-207ENST00000538475 ANO2Q9NQ90 1003 aa7.8□□□□□ -1.16
USP28-207ENST00000538475 MBIPQ9NS73 344 aa7.8□□□□□ -1.16
USP28-207ENST00000538475 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP7.8□□□□□ -1.16
USP28-207ENST00000538475 AKAP12Q02952 1782 aa7.79□□□□□ -1.16
USP28-207ENST00000538475 KIDINS220Q9ULH0 1771 aa7.79□□□□□ -1.16
USP28-207ENST00000538475 MON2Q7Z3U7 1717 aa7.79□□□□□ -1.16
USP28-207ENST00000538475 MYO1CO00159 1063 aa7.79□□□□□ -1.16
USP28-207ENST00000538475 WASLO00401 505 aaPredicted RBP7.79□□□□□ -1.16
USP28-207ENST00000538475 FYB1O15117 783 aa7.79□□□□□ -1.16
USP28-207ENST00000538475 FIBPO43427 364 aa7.79□□□□□ -1.16
USP28-207ENST00000538475 KIF1CO43896 1103 aaKnown RBP7.79□□□□□ -1.16
USP28-207ENST00000538475 LZTS3O60299 673 aaPredicted RBP7.79□□□□□ -1.16
USP28-207ENST00000538475 STAU1O95793 577 aaKnown RBP7.79□□□□□ -1.16
USP28-207ENST00000538475 PLA2G4AP47712 749 aa7.79□□□□□ -1.16
USP28-207ENST00000538475 SNW1Q13573 536 aaKnown RBP7.79□□□□□ -1.16
USP28-207ENST00000538475 ELF2Q15723 593 aa7.79□□□□□ -1.16
USP28-207ENST00000538475 STX1AQ16623 288 aa7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms