RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 PLEKHF1Q96S99 279 aa11.8□□□□□ -0.52
USP28-205ENST00000537706 SLC45A1Q9Y2W3 748 aa11.8□□□□□ -0.52
USP28-205ENST00000537706 ALPK3Q96L96 1907 aa11.8□□□□□ -0.52
USP28-205ENST00000537706 CRKP46108 304 aa11.8□□□□□ -0.52
USP28-205ENST00000537706 MFSD14BQ5SR56 506 aa11.8□□□□□ -0.52
USP28-205ENST00000537706 PFASO15067 1338 aa11.79□□□□□ -0.52
USP28-205ENST00000537706 FAM83AQ86UY5 434 aa11.79□□□□□ -0.52
USP28-205ENST00000537706 THEGQ9P2T0 379 aa11.79□□□□□ -0.52
USP28-205ENST00000537706 JAG2Q9Y219 1238 aa11.79□□□□□ -0.52
USP28-205ENST00000537706 LAS1LQ9Y4W2 734 aaKnown RBP11.79□□□□□ -0.52
USP28-205ENST00000537706 MRPS5P82675 430 aaKnown RBP11.78□□□□□ -0.52
USP28-205ENST00000537706 LRRC26Q2I0M4 334 aa11.78□□□□□ -0.52
USP28-205ENST00000537706 METTL22Q9BUU2 404 aaPredicted RBP11.78□□□□□ -0.52
USP28-205ENST00000537706 ITGA6P23229 1130 aa11.78□□□□□ -0.52
USP28-205ENST00000537706 ZEB1P37275 1124 aaPredicted RBP11.78□□□□□ -0.52
USP28-205ENST00000537706 GPAT2Q6NUI2 795 aa11.78□□□□□ -0.52
USP28-205ENST00000537706 GADL1Q6ZQY3 521 aa11.78□□□□□ -0.52
USP28-205ENST00000537706 ASB2Q96Q27 587 aa11.78□□□□□ -0.52
USP28-205ENST00000537706 PNMA3Q9UL41 463 aa11.78□□□□□ -0.52
USP28-205ENST00000537706 RANBP2P49792 3224 aaKnown RBP11.77□□□□□ -0.52
USP28-205ENST00000537706 INPP5BP32019 993 aa11.77□□□□□ -0.53
USP28-205ENST00000537706 NEXNQ0ZGT2 675 aa11.77□□□□□ -0.53
USP28-205ENST00000537706 NOL9Q5SY16 702 aaKnown RBP11.77□□□□□ -0.53
USP28-205ENST00000537706 TRMT44Q8IYL2 757 aaKnown RBP11.77□□□□□ -0.53
USP28-205ENST00000537706 CHMP4AQ9BY43 222 aa11.77□□□□□ -0.53
USP28-205ENST00000537706 TTYH1Q9H313 450 aaPredicted RBP11.77□□□□□ -0.53
USP28-205ENST00000537706 BRCA2P51587 3418 aa11.77□□□□□ -0.53
USP28-205ENST00000537706 COL6A1P12109 1028 aa11.76□□□□□ -0.53
USP28-205ENST00000537706 HDLBPQ00341 1268 aaKnown RBP11.76□□□□□ -0.53
USP28-205ENST00000537706 MOGSQ13724 837 aa11.76□□□□□ -0.53
USP28-205ENST00000537706 KRT24Q2M2I5 525 aa11.76□□□□□ -0.53
USP28-205ENST00000537706 FKBP1CQ5VVH2 108 aa11.76□□□□□ -0.53
USP28-205ENST00000537706 GAS2L1Q99501 681 aaPredicted RBP11.76□□□□□ -0.53
USP28-205ENST00000537706 CENPFP49454 3210 aa11.76□□□□□ -0.53
USP28-205ENST00000537706 DLG5Q8TDM6 1919 aa11.76□□□□□ -0.53
USP28-205ENST00000537706 RPAP1Q9BWH6 1393 aaPredicted RBP11.76□□□□□ -0.53
USP28-205ENST00000537706 DDX60LQ5H9U9 1706 aaKnown RBP11.76□□□□□ -0.53
USP28-205ENST00000537706 ANKRD18BA2A2Z9 1011 aa11.76□□□□□ -0.53
USP28-205ENST00000537706 CHL1O00533 1208 aa11.76□□□□□ -0.53
USP28-205ENST00000537706 SHHQ15465 462 aa11.76□□□□□ -0.53
USP28-205ENST00000537706 MIGA2Q7L4E1 593 aa11.76□□□□□ -0.53
USP28-205ENST00000537706 TEKT1Q969V4 418 aa11.76□□□□□ -0.53
USP28-205ENST00000537706 TSPYL2Q9H2G4 693 aaPredicted RBP11.76□□□□□ -0.53
USP28-205ENST00000537706 PICK1Q9NRD5 415 aa11.76□□□□□ -0.53
USP28-205ENST00000537706 FAM110CQ1W6H9 321 aa11.75□□□□□ -0.53
USP28-205ENST00000537706 DUSP27Q5VZP5 1158 aa11.75□□□□□ -0.53
USP28-205ENST00000537706 ANKRD13CQ8N6S4 541 aa11.75□□□□□ -0.53
USP28-205ENST00000537706 ARAP2Q8WZ64 1704 aa11.75□□□□□ -0.53
USP28-205ENST00000537706 A0A0G2JLL6 359 aaPredicted RBP11.74□□□□□ -0.53
USP28-205ENST00000537706 PRKAR2AP13861 404 aaKnown RBP11.74□□□□□ -0.53
USP28-205ENST00000537706 PRRT2Q7Z6L0 340 aaPredicted RBP11.74□□□□□ -0.53
USP28-205ENST00000537706 ALYREFQ86V81 257 aaKnown RBP11.74□□□□□ -0.53
USP28-205ENST00000537706 ZNF112Q9UJU3 913 aa11.74□□□□□ -0.53
USP28-205ENST00000537706 TAF5LO75529 589 aa11.74□□□□□ -0.53
USP28-205ENST00000537706 CACNB3P54284 484 aa11.74□□□□□ -0.53
USP28-205ENST00000537706 USP38Q8NB14 1042 aa11.74□□□□□ -0.53
USP28-205ENST00000537706 PPM1EQ8WY54 764 aa11.74□□□□□ -0.53
USP28-205ENST00000537706 PHAXQ9H814 394 aaKnown RBP11.74□□□□□ -0.53
USP28-205ENST00000537706 MAST3O60307 1309 aa11.73□□□□□ -0.53
USP28-205ENST00000537706 MGAMO43451 1857 aa11.73□□□□□ -0.53
USP28-205ENST00000537706 GCLCP48506 637 aaPredicted RBP11.73□□□□□ -0.53
USP28-205ENST00000537706 TBC1D22AQ8WUA7 517 aa11.73□□□□□ -0.53
USP28-205ENST00000537706 SENP6Q9GZR1 1112 aaPredicted RBP11.73□□□□□ -0.53
USP28-205ENST00000537706 CLSPNQ9HAW4 1339 aa11.73□□□□□ -0.53
USP28-205ENST00000537706 TRIM32Q13049 653 aa11.72□□□□□ -0.53
USP28-205ENST00000537706 PABPC4Q13310 644 aaKnown RBP eCLIP11.72□□□□□ -0.53
USP28-205ENST00000537706 TMEM31Q5JXX7 168 aa11.72□□□□□ -0.53
USP28-205ENST00000537706 ZHX2Q9Y6X8 837 aa11.72□□□□□ -0.53
USP28-205ENST00000537706 ZKSCAN1P17029 563 aaPredicted RBP11.72□□□□□ -0.53
USP28-205ENST00000537706 HIBADHP31937 336 aaKnown RBP11.72□□□□□ -0.53
USP28-205ENST00000537706 AKNAD1Q5T1N1 836 aa11.72□□□□□ -0.53
USP28-205ENST00000537706 TDRD7Q8NHU6 1098 aaKnown RBP11.72□□□□□ -0.53
USP28-205ENST00000537706 FAM151AQ8WW52 585 aa11.72□□□□□ -0.53
USP28-205ENST00000537706 PLA2G12BQ9BX93 195 aa11.72□□□□□ -0.53
USP28-205ENST00000537706 MAP3K2Q9Y2U5 619 aa11.72□□□□□ -0.53
USP28-205ENST00000537706 SNAP23O00161 211 aa11.71□□□□□ -0.53
USP28-205ENST00000537706 FRAT2O75474 233 aaPredicted RBP11.71□□□□□ -0.53
USP28-205ENST00000537706 TMPOP42166 694 aaKnown RBP11.71□□□□□ -0.53
USP28-205ENST00000537706 PDE3AQ14432 1141 aa11.71□□□□□ -0.53
USP28-205ENST00000537706 C9orf50Q5SZB4 431 aa11.71□□□□□ -0.53
USP28-205ENST00000537706 MAP3K21Q5TCX8 1036 aa11.71□□□□□ -0.53
USP28-205ENST00000537706 UBE3BQ7Z3V4 1068 aa11.71□□□□□ -0.53
USP28-205ENST00000537706 SOCS4Q8WXH5 440 aa11.71□□□□□ -0.53
USP28-205ENST00000537706 RNPC3Q96LT9 517 aaKnown RBP11.71□□□□□ -0.53
USP28-205ENST00000537706 ZDHHC15Q96MV8 337 aa11.71□□□□□ -0.53
USP28-205ENST00000537706 P2RX7Q99572 595 aaKnown RBP11.71□□□□□ -0.53
USP28-205ENST00000537706 LRFN3Q9BTN0 628 aa11.71□□□□□ -0.53
USP28-205ENST00000537706 MRIQ9BWK5 157 aa11.71□□□□□ -0.53
USP28-205ENST00000537706 PRDM5Q9NQX1 630 aaPredicted RBP11.71□□□□□ -0.53
USP28-205ENST00000537706 AGTPBP1Q9UPW5 1226 aa11.71□□□□□ -0.53
USP28-205ENST00000537706 SPEF2Q9C093 1822 aa11.71□□□□□ -0.54
USP28-205ENST00000537706 PLIN1O60240 522 aa11.7□□□□□ -0.54
USP28-205ENST00000537706 CYP2B6P20813 491 aa11.7□□□□□ -0.54
USP28-205ENST00000537706 RTP1P59025 263 aa11.7□□□□□ -0.54
USP28-205ENST00000537706 IFIT5Q13325 482 aaKnown RBP11.7□□□□□ -0.54
USP28-205ENST00000537706 GRIN2CQ14957 1233 aa11.7□□□□□ -0.54
USP28-205ENST00000537706 AAK1Q2M2I8 961 aa11.7□□□□□ -0.54
USP28-205ENST00000537706 TAF7LQ5H9L4 462 aa11.7□□□□□ -0.54
USP28-205ENST00000537706 VPS37DQ86XT2 251 aa11.7□□□□□ -0.54
USP28-205ENST00000537706 SCYL3Q8IZE3 742 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms