RNA–Protein interactions for RNA: ENST00000536710.1

PRKDC-208, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 4

Gene PRKDC, Length 554 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-208ENST00000536710 MAOBP27338 520 aa8.21□□□□□ -1.1
PRKDC-208ENST00000536710 SOX9P48436 509 aa8.21□□□□□ -1.1
PRKDC-208ENST00000536710 NLRP12P59046 1061 aa8.21□□□□□ -1.1
PRKDC-208ENST00000536710 ZNF252P-AS1Q0IIN9 211 aa8.21□□□□□ -1.1
PRKDC-208ENST00000536710 PDE3AQ14432 1141 aa8.21□□□□□ -1.1
PRKDC-208ENST00000536710 CCDC81Q6ZN84 652 aa8.21□□□□□ -1.1
PRKDC-208ENST00000536710 PDZD3Q86UT5 571 aa8.21□□□□□ -1.1
PRKDC-208ENST00000536710 GAL3ST3Q96A11 431 aa8.21□□□□□ -1.1
PRKDC-208ENST00000536710 ANAPC16Q96DE5 110 aa8.21□□□□□ -1.1
PRKDC-208ENST00000536710 KLHDC7BQ96G42 594 aa8.21□□□□□ -1.1
PRKDC-208ENST00000536710 FERD3LQ96RJ6 166 aa8.21□□□□□ -1.1
PRKDC-208ENST00000536710 USP26Q9BXU7 913 aa8.21□□□□□ -1.1
PRKDC-208ENST00000536710 LNPKQ9C0E8 428 aa8.21□□□□□ -1.1
PRKDC-208ENST00000536710 RRAGCQ9HB90 399 aa8.21□□□□□ -1.1
PRKDC-208ENST00000536710 STRIP2Q9ULQ0 834 aa8.21□□□□□ -1.1
PRKDC-208ENST00000536710 PCDHA4Q9UN74 947 aa8.21□□□□□ -1.1
PRKDC-208ENST00000536710 FAM221AA4D161 298 aa8.2□□□□□ -1.1
PRKDC-208ENST00000536710 CILPO75339 1184 aa8.2□□□□□ -1.1
PRKDC-208ENST00000536710 TRIM37O94972 964 aa8.2□□□□□ -1.1
PRKDC-208ENST00000536710 ECEL1O95672 775 aa8.2□□□□□ -1.1
PRKDC-208ENST00000536710 SLURP2P0DP57 97 aa8.2□□□□□ -1.1
PRKDC-208ENST00000536710 PTPN11Q06124 597 aaPredicted RBP8.2□□□□□ -1.1
PRKDC-208ENST00000536710 LYPD4Q6UWN0 246 aa8.2□□□□□ -1.1
PRKDC-208ENST00000536710 SLITRK4Q8IW52 837 aa8.2□□□□□ -1.1
PRKDC-208ENST00000536710 CKAP2LQ8IYA6 745 aa8.2□□□□□ -1.1
PRKDC-208ENST00000536710 KLHL23Q8NBE8 558 aa8.2□□□□□ -1.1
PRKDC-208ENST00000536710 BRMS1Q9HCU9 246 aa8.2□□□□□ -1.1
PRKDC-208ENST00000536710 PPT2Q9UMR5 302 aa8.2□□□□□ -1.1
PRKDC-208ENST00000536710 CELA2BP08218 269 aaPredicted RBP8.19□□□□□ -1.1
PRKDC-208ENST00000536710 GMPRP36959 345 aa8.19□□□□□ -1.1
PRKDC-208ENST00000536710 ZNF165P49910 485 aa8.19□□□□□ -1.1
PRKDC-208ENST00000536710 HNRNPUQ00839 825 aaKnown RBP eCLIP8.19□□□□□ -1.1
PRKDC-208ENST00000536710 SOGA3Q5TF21 947 aa8.19□□□□□ -1.1
PRKDC-208ENST00000536710 GK5Q6ZS86 529 aa8.19□□□□□ -1.1
PRKDC-208ENST00000536710 REC114Q7Z4M0 266 aa8.19□□□□□ -1.1
PRKDC-208ENST00000536710 NEDD1Q8NHV4 660 aa8.19□□□□□ -1.1
PRKDC-208ENST00000536710 GPBAR1Q8TDU6 330 aa8.19□□□□□ -1.1
PRKDC-208ENST00000536710 SRRTQ9BXP5 876 aaKnown RBP8.19□□□□□ -1.1
PRKDC-208ENST00000536710 LRRC3Q9BY71 257 aa8.19□□□□□ -1.1
PRKDC-208ENST00000536710 ZNF408Q9H9D4 720 aa8.19□□□□□ -1.1
PRKDC-208ENST00000536710 RPL6Q02878 288 aaKnown RBP8.18□□□□□ -1.1
PRKDC-208ENST00000536710 RBL2Q08999 1139 aa8.18□□□□□ -1.1
PRKDC-208ENST00000536710 SUZ12Q15022 739 aaKnown RBP8.18□□□□□ -1.1
PRKDC-208ENST00000536710 SETDB1Q15047 1291 aa8.18□□□□□ -1.1
PRKDC-208ENST00000536710 TRAPPC3LQ5T215 181 aa8.18□□□□□ -1.1
PRKDC-208ENST00000536710 SCARA3Q6AZY7 606 aa8.18□□□□□ -1.1
PRKDC-208ENST00000536710 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.18□□□□□ -1.1
PRKDC-208ENST00000536710 CRBNQ96SW2 442 aa8.18□□□□□ -1.1
PRKDC-208ENST00000536710 CCDC86Q9H6F5 360 aaKnown RBP8.18□□□□□ -1.1
PRKDC-208ENST00000536710 PRDM6Q9NQX0 595 aa8.18□□□□□ -1.1
PRKDC-208ENST00000536710 LRRC4BQ9NT99 713 aa8.18□□□□□ -1.1
PRKDC-208ENST00000536710 DDX3YO15523 660 aaKnown RBP8.17□□□□□ -1.1
PRKDC-208ENST00000536710 GRIN3BO60391 1043 aa8.17□□□□□ -1.1
PRKDC-208ENST00000536710 NID1P14543 1247 aa8.17□□□□□ -1.1
PRKDC-208ENST00000536710 ETFBP38117 255 aa8.17□□□□□ -1.1
PRKDC-208ENST00000536710 CCDC144BQ3MJ40 725 aa8.17□□□□□ -1.1
PRKDC-208ENST00000536710 MAP4K3Q8IVH8 894 aa8.17□□□□□ -1.1
PRKDC-208ENST00000536710 GALNT11Q8NCW6 608 aa8.17□□□□□ -1.1
PRKDC-208ENST00000536710 R3HCC1Q9Y3T6 440 aaKnown RBP8.17□□□□□ -1.1
PRKDC-208ENST00000536710 WFS1O76024 890 aa8.16□□□□□ -1.1
PRKDC-208ENST00000536710 LIG1P18858 919 aa8.16□□□□□ -1.1
PRKDC-208ENST00000536710 CD68P34810 354 aaPredicted RBP8.16□□□□□ -1.1
PRKDC-208ENST00000536710 EIF6P56537 245 aaKnown RBP8.16□□□□□ -1.1
PRKDC-208ENST00000536710 WIPI1Q5MNZ9 446 aaPredicted RBP8.16□□□□□ -1.1
PRKDC-208ENST00000536710 WHAMMQ8TF30 809 aa8.16□□□□□ -1.1
PRKDC-208ENST00000536710 ELMO3Q96BJ8 720 aa8.16□□□□□ -1.1
PRKDC-208ENST00000536710 NRSN2Q9GZP1 204 aa8.16□□□□□ -1.1
PRKDC-208ENST00000536710 ZSWIM4Q9H7M6 989 aa8.16□□□□□ -1.1
PRKDC-208ENST00000536710 KRT82Q9NSB4 513 aa8.16□□□□□ -1.1
PRKDC-208ENST00000536710 CTSBP07858 339 aa8.15□□□□□ -1.1
PRKDC-208ENST00000536710 CDK8P49336 464 aa8.15□□□□□ -1.1
PRKDC-208ENST00000536710 CLCQ05315 142 aa8.15□□□□□ -1.1
PRKDC-208ENST00000536710 HP1BP3Q5SSJ5 553 aaPredicted RBP8.15□□□□□ -1.1
PRKDC-208ENST00000536710 ANKS3Q6ZW76 656 aa8.15□□□□□ -1.1
PRKDC-208ENST00000536710 SVOPQ8N4V2 548 aa8.15□□□□□ -1.1
PRKDC-208ENST00000536710 TRIM55Q9BYV6 548 aa8.15□□□□□ -1.1
PRKDC-208ENST00000536710 ENAMQ9NRM1 1142 aa8.15□□□□□ -1.1
PRKDC-208ENST00000536710 RAD18Q9NS91 495 aa8.15□□□□□ -1.1
PRKDC-208ENST00000536710 PCDHB14Q9Y5E9 798 aa8.15□□□□□ -1.1
PRKDC-208ENST00000536710 LOC100289279A0A1B0GTE1 492 aa8.14□□□□□ -1.11
PRKDC-208ENST00000536710 DGKGP49619 791 aa8.14□□□□□ -1.11
PRKDC-208ENST00000536710 HDXQ7Z353 690 aa8.14□□□□□ -1.11
PRKDC-208ENST00000536710 REXO1Q8N1G1 1221 aaKnown RBP8.14□□□□□ -1.11
PRKDC-208ENST00000536710 DCAF11Q8TEB1 546 aa8.14□□□□□ -1.11
PRKDC-208ENST00000536710 PLPPR2Q96GM1 343 aa8.14□□□□□ -1.11
PRKDC-208ENST00000536710 OSBPL2Q9H1P3 480 aa8.14□□□□□ -1.11
PRKDC-208ENST00000536710 DCDC2CA8MYV0 355 aa8.13□□□□□ -1.11
PRKDC-208ENST00000536710 U2SURPO15042 1029 aaKnown RBP8.13□□□□□ -1.11
PRKDC-208ENST00000536710 SMARCA5O60264 1052 aaPredicted RBP8.13□□□□□ -1.11
PRKDC-208ENST00000536710 ZNF862O60290 1169 aa8.13□□□□□ -1.11
PRKDC-208ENST00000536710 ADAM11O75078 769 aa8.13□□□□□ -1.11
PRKDC-208ENST00000536710 DEAF1O75398 565 aaPredicted RBP8.13□□□□□ -1.11
PRKDC-208ENST00000536710 IMPDH2P12268 514 aa8.13□□□□□ -1.11
PRKDC-208ENST00000536710 RAC1P63000 192 aa8.13□□□□□ -1.11
PRKDC-208ENST00000536710 COL9A3Q14050 684 aaPredicted RBP8.13□□□□□ -1.11
PRKDC-208ENST00000536710 INPP5AQ14642 412 aa8.13□□□□□ -1.11
PRKDC-208ENST00000536710 FOXD4L6Q3SYB3 417 aaPredicted RBP8.13□□□□□ -1.11
PRKDC-208ENST00000536710 LRFN4Q6PJG9 635 aa8.13□□□□□ -1.11
PRKDC-208ENST00000536710 FOXD4L3Q6VB84 417 aaPredicted RBP8.13□□□□□ -1.11
PRKDC-208ENST00000536710 WDR89Q96FK6 387 aaPredicted RBP8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms