RNA–Protein interactions for RNA: ENST00000536011.5

RTN3-207, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 992 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-207ENST00000536011 CDAN1Q8IWY9 1227 aa16.27■□□□□ 0.2
RTN3-207ENST00000536011 ERO1AQ96HE7 468 aa16.27■□□□□ 0.2
RTN3-207ENST00000536011 GJA5P36382 358 aa16.26■□□□□ 0.19
RTN3-207ENST00000536011 MVPQ14764 893 aaKnown RBP16.26■□□□□ 0.19
RTN3-207ENST00000536011 SLF2Q8IX21 1173 aa16.26■□□□□ 0.19
RTN3-207ENST00000536011 FRAT1Q92837 279 aaPredicted RBP16.26■□□□□ 0.19
RTN3-207ENST00000536011 WRNIP1Q96S55 665 aa16.26■□□□□ 0.19
RTN3-207ENST00000536011 PA2G4Q9UQ80 394 aaKnown RBP16.26■□□□□ 0.19
RTN3-207ENST00000536011 DAGLAQ9Y4D2 1042 aa16.26■□□□□ 0.19
RTN3-207ENST00000536011 PDS5AQ29RF7 1337 aaKnown RBP16.25■□□□□ 0.19
RTN3-207ENST00000536011 SPDYE5A6NIY4 337 aa16.25■□□□□ 0.19
RTN3-207ENST00000536011 GNAI2P04899 355 aa16.25■□□□□ 0.19
RTN3-207ENST00000536011 TRIM27P14373 513 aa16.25■□□□□ 0.19
RTN3-207ENST00000536011 PRDX5P30044 214 aa16.25■□□□□ 0.19
RTN3-207ENST00000536011 PHKA1P46020 1223 aa16.25■□□□□ 0.19
RTN3-207ENST00000536011 SOX10P56693 466 aa16.25■□□□□ 0.19
RTN3-207ENST00000536011 CRHR2Q13324 411 aa16.25■□□□□ 0.19
RTN3-207ENST00000536011 CCDC102BQ68D86 513 aa16.25■□□□□ 0.19
RTN3-207ENST00000536011 FAM151AQ8WW52 585 aa16.25■□□□□ 0.19
RTN3-207ENST00000536011 OTUD5Q96G74 571 aa16.25■□□□□ 0.19
RTN3-207ENST00000536011 ZNF341Q9BYN7 854 aa16.25■□□□□ 0.19
RTN3-207ENST00000536011 R3HDMLQ9H3Y0 253 aa16.25■□□□□ 0.19
RTN3-207ENST00000536011 CCL15-CCL14A0A0B4J2E2 113 aa16.24■□□□□ 0.19
RTN3-207ENST00000536011 MYCNP04198 464 aaPredicted RBP16.24■□□□□ 0.19
RTN3-207ENST00000536011 ARHGEF6Q15052 776 aa16.24■□□□□ 0.19
RTN3-207ENST00000536011 DIXDC1Q155Q3 683 aa16.24■□□□□ 0.19
RTN3-207ENST00000536011 CCL15Q16663 113 aa16.24■□□□□ 0.19
RTN3-207ENST00000536011 SPTY2D1Q68D10 685 aaPredicted RBP16.24■□□□□ 0.19
RTN3-207ENST00000536011 ERO1BQ86YB8 467 aa16.24■□□□□ 0.19
RTN3-207ENST00000536011 DZIP1Q86YF9 867 aaKnown RBP16.24■□□□□ 0.19
RTN3-207ENST00000536011 CETPP11597 493 aa16.23■□□□□ 0.19
RTN3-207ENST00000536011 MS4A4AQ96JQ5 239 aa16.23■□□□□ 0.19
RTN3-207ENST00000536011 ZFYVE28Q9HCC9 887 aa16.23■□□□□ 0.19
RTN3-207ENST00000536011 ZCCHC17Q9NP64 241 aaKnown RBP16.23■□□□□ 0.19
RTN3-207ENST00000536011 TRIM17Q9Y577 477 aa16.23■□□□□ 0.19
RTN3-207ENST00000536011 SNCAIPQ9Y6H5 919 aa16.23■□□□□ 0.19
RTN3-207ENST00000536011 A0A1B0GUL7 405 aa16.22■□□□□ 0.19
RTN3-207ENST00000536011 ADORA1P30542 326 aa16.22■□□□□ 0.19
RTN3-207ENST00000536011 HNRNPUQ00839 825 aaKnown RBP eCLIP16.22■□□□□ 0.19
RTN3-207ENST00000536011 SP3Q02447 781 aa16.22■□□□□ 0.19
RTN3-207ENST00000536011 PPIL2Q13356 520 aa16.22■□□□□ 0.19
RTN3-207ENST00000536011 SNAPC2Q13487 334 aa16.22■□□□□ 0.19
RTN3-207ENST00000536011 GORABQ5T7V8 394 aa16.22■□□□□ 0.19
RTN3-207ENST00000536011 ZKSCAN2Q63HK3 967 aa16.22■□□□□ 0.19
RTN3-207ENST00000536011 CDC42EP5Q6NZY7 148 aa16.22■□□□□ 0.19
RTN3-207ENST00000536011 BRI3BPQ8WY22 251 aa16.22■□□□□ 0.19
RTN3-207ENST00000536011 PTPN18Q99952 460 aa16.22■□□□□ 0.19
RTN3-207ENST00000536011 USP40Q9NVE5 1235 aa16.22■□□□□ 0.19
RTN3-207ENST00000536011 HTTP42858 3142 aa16.22■□□□□ 0.19
RTN3-207ENST00000536011 TNRC18O15417 2968 aaPredicted RBP16.22■□□□□ 0.19
RTN3-207ENST00000536011 BCAR3O75815 825 aa16.21■□□□□ 0.19
RTN3-207ENST00000536011 TIMM10P62072 90 aa16.21■□□□□ 0.19
RTN3-207ENST00000536011 TCP10Q12799 353 aa16.21■□□□□ 0.19
RTN3-207ENST00000536011 TFCP2Q12800 502 aa16.21■□□□□ 0.19
RTN3-207ENST00000536011 RASGRF1Q13972 1273 aa16.21■□□□□ 0.19
RTN3-207ENST00000536011 TAF1CQ15572 869 aaPredicted RBP16.21■□□□□ 0.19
RTN3-207ENST00000536011 OTOP1Q7RTM1 612 aa16.21■□□□□ 0.19
RTN3-207ENST00000536011 ZKSCAN4Q969J2 545 aaPredicted RBP16.21■□□□□ 0.19
RTN3-207ENST00000536011 XAGE2Q96GT9 111 aa16.21■□□□□ 0.19
RTN3-207ENST00000536011 ABCF2Q9UG63 623 aa16.21■□□□□ 0.19
RTN3-207ENST00000536011 GAKO14976 1311 aa16.2■□□□□ 0.18
RTN3-207ENST00000536011 PPATQ06203 517 aa16.2■□□□□ 0.18
RTN3-207ENST00000536011 G3BP1Q13283 466 aaKnown RBP eCLIP16.2■□□□□ 0.18
RTN3-207ENST00000536011 FTSJ3Q8IY81 847 aaKnown RBP16.2■□□□□ 0.18
RTN3-207ENST00000536011 CLUAP1Q96AJ1 413 aa16.2■□□□□ 0.18
RTN3-207ENST00000536011 NEUROD6Q96NK8 337 aa16.2■□□□□ 0.18
RTN3-207ENST00000536011 EFCC1Q9HA90 598 aa16.2■□□□□ 0.18
RTN3-207ENST00000536011 ENTPD3O75355 529 aa16.19■□□□□ 0.18
RTN3-207ENST00000536011 NFIAQ12857 509 aa16.19■□□□□ 0.18
RTN3-207ENST00000536011 MIGA2Q7L4E1 593 aa16.19■□□□□ 0.18
RTN3-207ENST00000536011 CD99L2Q8TCZ2 262 aa16.19■□□□□ 0.18
RTN3-207ENST00000536011 IDI2Q9BXS1 227 aa16.19■□□□□ 0.18
RTN3-207ENST00000536011 AK9Q5TCS8 1911 aa16.19■□□□□ 0.18
RTN3-207ENST00000536011 MYH2Q9UKX2 1941 aa16.18■□□□□ 0.18
RTN3-207ENST00000536011 IRF6O14896 467 aa16.18■□□□□ 0.18
RTN3-207ENST00000536011 GSTO1P78417 241 aa16.18■□□□□ 0.18
RTN3-207ENST00000536011 ERICH6Q7L0X2 663 aa16.18■□□□□ 0.18
RTN3-207ENST00000536011 FAM163AQ96GL9 167 aaPredicted RBP16.18■□□□□ 0.18
RTN3-207ENST00000536011 FAM198AQ9UFP1 575 aa16.18■□□□□ 0.18
RTN3-207ENST00000536011 ZNF112Q9UJU3 913 aa16.18■□□□□ 0.18
RTN3-207ENST00000536011 CENPFP49454 3210 aa16.18■□□□□ 0.18
RTN3-207ENST00000536011 PDE4DIPQ5VU43 2346 aa16.17■□□□□ 0.18
RTN3-207ENST00000536011 MAP4K4O95819 1239 aaPredicted RBP16.17■□□□□ 0.18
RTN3-207ENST00000536011 KIF22Q14807 665 aa16.17■□□□□ 0.18
RTN3-207ENST00000536011 NOL9Q5SY16 702 aaKnown RBP16.17■□□□□ 0.18
RTN3-207ENST00000536011 DIEXFQ68CQ4 756 aaKnown RBP16.17■□□□□ 0.18
RTN3-207ENST00000536011 ZSCAN29Q8IWY8 852 aaPredicted RBP16.17■□□□□ 0.18
RTN3-207ENST00000536011 FAM43AQ8N2R8 423 aa16.17■□□□□ 0.18
RTN3-207ENST00000536011 TMEM57Q8N5G2 664 aa16.17■□□□□ 0.18
RTN3-207ENST00000536011 SPATA5Q8NB90 893 aa16.17■□□□□ 0.18
RTN3-207ENST00000536011 PTPN22Q9Y2R2 807 aa16.17■□□□□ 0.18
RTN3-207ENST00000536011 DOCK2Q92608 1830 aa16.17■□□□□ 0.18
RTN3-207ENST00000536011 MROH7-TTC4A0A0A0MT08 1334 aa16.17■□□□□ 0.18
RTN3-207ENST00000536011 PNMA6EA0A0J9YXQ4 647 aa16.16■□□□□ 0.18
RTN3-207ENST00000536011 LDHCP07864 332 aa16.16■□□□□ 0.18
RTN3-207ENST00000536011 UQCRFS1P1P0C7P4 283 aa16.16■□□□□ 0.18
RTN3-207ENST00000536011 INPP5BP32019 993 aa16.16■□□□□ 0.18
RTN3-207ENST00000536011 RGS3P49796 1198 aa16.16■□□□□ 0.18
RTN3-207ENST00000536011 OS9Q13438 667 aaPredicted RBP16.16■□□□□ 0.18
RTN3-207ENST00000536011 PICK1Q9NRD5 415 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms