RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 PLBD2Q8NHP8 589 aa8.45□□□□□ -1.06
CD44-237ENST00000534082 CCDC85AQ96PX6 553 aaPredicted RBP8.45□□□□□ -1.06
CD44-237ENST00000534082 ZCCHC17Q9NP64 241 aaKnown RBP8.45□□□□□ -1.06
CD44-237ENST00000534082 PCDHAC2Q9Y5I4 1007 aa8.45□□□□□ -1.06
CD44-237ENST00000534082 BTBD19C9JJ37 291 aa8.44□□□□□ -1.06
CD44-237ENST00000534082 MYO1BO43795 1136 aa8.44□□□□□ -1.06
CD44-237ENST00000534082 FMNL1O95466 1100 aaPredicted RBP8.44□□□□□ -1.06
CD44-237ENST00000534082 TFRCP02786 760 aaKnown RBP8.44□□□□□ -1.06
CD44-237ENST00000534082 SYN1P17600 705 aa8.44□□□□□ -1.06
CD44-237ENST00000534082 GTF2IP78347 998 aa8.44□□□□□ -1.06
CD44-237ENST00000534082 PRKCZQ05513 592 aa8.44□□□□□ -1.06
CD44-237ENST00000534082 RASA3Q14644 834 aa8.44□□□□□ -1.06
CD44-237ENST00000534082 C17orf99Q6UX52 265 aa8.44□□□□□ -1.06
CD44-237ENST00000534082 MTMR14Q8NCE2 650 aa8.44□□□□□ -1.06
CD44-237ENST00000534082 HELBQ8NG08 1087 aaPredicted RBP8.44□□□□□ -1.06
CD44-237ENST00000534082 FAM122AQ96E09 287 aa8.44□□□□□ -1.06
CD44-237ENST00000534082 PAWRQ96IZ0 340 aaKnown RBP8.44□□□□□ -1.06
CD44-237ENST00000534082 FAM161BQ96MY7 647 aa8.44□□□□□ -1.06
CD44-237ENST00000534082 UBE2OQ9C0C9 1292 aaKnown RBP8.44□□□□□ -1.06
CD44-237ENST00000534082 CPA4Q9UI42 421 aa8.44□□□□□ -1.06
CD44-237ENST00000534082 AOX1Q06278 1338 aa8.44□□□□□ -1.06
CD44-237ENST00000534082 SPDYE5A6NIY4 337 aa8.43□□□□□ -1.06
CD44-237ENST00000534082 CETPP11597 493 aa8.43□□□□□ -1.06
CD44-237ENST00000534082 HSP90B1P14625 803 aaKnown RBP8.43□□□□□ -1.06
CD44-237ENST00000534082 CCT4P50991 539 aaKnown RBP8.43□□□□□ -1.06
CD44-237ENST00000534082 LSM11P83369 360 aaKnown RBP eCLIP8.43□□□□□ -1.06
CD44-237ENST00000534082 CFAP100Q494V2 611 aa8.43□□□□□ -1.06
CD44-237ENST00000534082 FAM109BQ6ICB4 259 aaPredicted RBP8.43□□□□□ -1.06
CD44-237ENST00000534082 NECAB2Q7Z6G3 386 aa8.43□□□□□ -1.06
CD44-237ENST00000534082 TXNRD3Q86VQ6 643 aa8.43□□□□□ -1.06
CD44-237ENST00000534082 ZBTB38Q8NAP3 1195 aaPredicted RBP8.43□□□□□ -1.06
CD44-237ENST00000534082 DIS3LQ8TF46 1054 aaKnown RBP8.43□□□□□ -1.06
CD44-237ENST00000534082 SYMPKQ92797 1274 aaKnown RBP8.43□□□□□ -1.06
CD44-237ENST00000534082 DDX27Q96GQ7 796 aaKnown RBP8.43□□□□□ -1.06
CD44-237ENST00000534082 DEFB118Q96PH6 123 aa8.43□□□□□ -1.06
CD44-237ENST00000534082 CHPF2Q9P2E5 772 aa8.43□□□□□ -1.06
CD44-237ENST00000534082 TIMELESSQ9UNS1 1208 aa8.43□□□□□ -1.06
CD44-237ENST00000534082 CSADQ9Y600 493 aa8.43□□□□□ -1.06
CD44-237ENST00000534082 ADGRA2Q96PE1 1338 aa8.43□□□□□ -1.06
CD44-237ENST00000534082 INHAP05111 366 aa8.42□□□□□ -1.06
CD44-237ENST00000534082 NEFMP07197 916 aa8.42□□□□□ -1.06
CD44-237ENST00000534082 CAPN2P17655 700 aa8.42□□□□□ -1.06
CD44-237ENST00000534082 KLRK1P26718 216 aa8.42□□□□□ -1.06
CD44-237ENST00000534082 MAP3K9P80192 1104 aa8.42□□□□□ -1.06
CD44-237ENST00000534082 TRIM28Q13263 835 aaKnown RBP8.42□□□□□ -1.06
CD44-237ENST00000534082 NFE2L2Q16236 605 aa8.42□□□□□ -1.06
CD44-237ENST00000534082 CERS5Q8N5B7 392 aa8.42□□□□□ -1.06
CD44-237ENST00000534082 DDX55Q8NHQ9 600 aaKnown RBP eCLIP8.42□□□□□ -1.06
CD44-237ENST00000534082 MAFAQ8NHW3 353 aaPredicted RBP8.42□□□□□ -1.06
CD44-237ENST00000534082 OXER1Q8TDS5 423 aa8.42□□□□□ -1.06
CD44-237ENST00000534082 BBXQ8WY36 941 aaPredicted RBP8.42□□□□□ -1.06
CD44-237ENST00000534082 RNF166Q96A37 237 aaPredicted RBP8.42□□□□□ -1.06
CD44-237ENST00000534082 MINPP1Q9UNW1 487 aa8.42□□□□□ -1.06
CD44-237ENST00000534082 FAM205AQ6ZU69 1335 aa8.42□□□□□ -1.06
CD44-237ENST00000534082 COL2A1P02458 1487 aaPredicted RBP8.42□□□□□ -1.06
CD44-237ENST00000534082 SPEF2Q9C093 1822 aa8.41□□□□□ -1.06
CD44-237ENST00000534082 F8W031 263 aaPredicted RBP8.41□□□□□ -1.06
CD44-237ENST00000534082 PDE8AO60658 829 aa8.41□□□□□ -1.06
CD44-237ENST00000534082 ELNP15502 786 aa8.41□□□□□ -1.06
CD44-237ENST00000534082 PBX2P40425 430 aa8.41□□□□□ -1.06
CD44-237ENST00000534082 SNAPC2Q13487 334 aa8.41□□□□□ -1.06
CD44-237ENST00000534082 TNFAIP1Q13829 316 aa8.41□□□□□ -1.06
CD44-237ENST00000534082 PRMT6Q96LA8 375 aaPredicted RBP8.41□□□□□ -1.06
CD44-237ENST00000534082 CDC5LQ99459 802 aaKnown RBP8.41□□□□□ -1.06
CD44-237ENST00000534082 PAK6Q9NQU5 681 aaPredicted RBP8.41□□□□□ -1.06
CD44-237ENST00000534082 SNCAIPQ9Y6H5 919 aa8.41□□□□□ -1.06
CD44-237ENST00000534082 TMEM265A0A087WTH1 108 aa8.4□□□□□ -1.06
CD44-237ENST00000534082 TNFRSF10AO00220 468 aa8.4□□□□□ -1.06
CD44-237ENST00000534082 IRF6O14896 467 aa8.4□□□□□ -1.06
CD44-237ENST00000534082 ADCY3O60266 1144 aa8.4□□□□□ -1.06
CD44-237ENST00000534082 FCGRTP55899 365 aa8.4□□□□□ -1.06
CD44-237ENST00000534082 PPP4R3BQ5MIZ7 849 aa8.4□□□□□ -1.06
CD44-237ENST00000534082 ZNF697Q5TEC3 545 aa8.4□□□□□ -1.06
CD44-237ENST00000534082 POTEEQ6S8J3 1075 aa8.4□□□□□ -1.06
CD44-237ENST00000534082 TEPSINQ96N21 525 aa8.4□□□□□ -1.06
CD44-237ENST00000534082 BSDC1Q9NW68 430 aaPredicted RBP8.4□□□□□ -1.06
CD44-237ENST00000534082 GABRQQ9UN88 632 aa8.4□□□□□ -1.06
CD44-237ENST00000534082 LEMD3Q9Y2U8 911 aa8.4□□□□□ -1.06
CD44-237ENST00000534082 ARAP2Q8WZ64 1704 aa8.4□□□□□ -1.07
CD44-237ENST00000534082 PDHXO00330 501 aa8.39□□□□□ -1.07
CD44-237ENST00000534082 PCCAP05165 728 aaPredicted RBP8.39□□□□□ -1.07
CD44-237ENST00000534082 RBM5P52756 815 aaKnown RBP eCLIP8.39□□□□□ -1.07
CD44-237ENST00000534082 CTSWP56202 376 aa8.39□□□□□ -1.07
CD44-237ENST00000534082 PPIL2Q13356 520 aa8.39□□□□□ -1.07
CD44-237ENST00000534082 KRT24Q2M2I5 525 aa8.39□□□□□ -1.07
CD44-237ENST00000534082 HDGFL1Q5TGJ6 251 aa8.39□□□□□ -1.07
CD44-237ENST00000534082 ERO1BQ86YB8 467 aa8.39□□□□□ -1.07
CD44-237ENST00000534082 ANKLE1Q8NAG6 615 aa8.39□□□□□ -1.07
CD44-237ENST00000534082 JARID2Q92833 1246 aaPredicted RBP8.39□□□□□ -1.07
CD44-237ENST00000534082 CDX2Q99626 313 aaPredicted RBP8.39□□□□□ -1.07
CD44-237ENST00000534082 ARHGAP33O14559 1287 aa8.38□□□□□ -1.07
CD44-237ENST00000534082 FLT3LGP49771 235 aa8.38□□□□□ -1.07
CD44-237ENST00000534082 ANKRD23Q86SG2 305 aa8.38□□□□□ -1.07
CD44-237ENST00000534082 PXYLP1Q8TE99 480 aa8.38□□□□□ -1.07
CD44-237ENST00000534082 WRNIP1Q96S55 665 aa8.38□□□□□ -1.07
CD44-237ENST00000534082 PLEKHF1Q96S99 279 aa8.38□□□□□ -1.07
CD44-237ENST00000534082 TMEM39BQ9GZU3 492 aa8.38□□□□□ -1.07
CD44-237ENST00000534082 NBPF3Q9H094 633 aa8.38□□□□□ -1.07
CD44-237ENST00000534082 XRN2Q9H0D6 950 aaKnown RBP eCLIP8.38□□□□□ -1.07
CD44-237ENST00000534082 CD209Q9NNX6 404 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms