RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-231ENST00000531110 GLB1P16278 677 aa8.1□□□□□ -1.11
CD44-231ENST00000531110 ZNF157P51786 506 aaPredicted RBP8.1□□□□□ -1.11
CD44-231ENST00000531110 KIF4BQ2VIQ3 1234 aa8.1□□□□□ -1.11
CD44-231ENST00000531110 MEI1Q5TIA1 1274 aa8.1□□□□□ -1.11
CD44-231ENST00000531110 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.1□□□□□ -1.11
CD44-231ENST00000531110 AGGF1Q8N302 714 aaeCLIP8.1□□□□□ -1.11
CD44-231ENST00000531110 FBXO24O75426 580 aa8.09□□□□□ -1.11
CD44-231ENST00000531110 CTSBP07858 339 aa8.09□□□□□ -1.11
CD44-231ENST00000531110 CELA3AP09093 270 aa8.09□□□□□ -1.11
CD44-231ENST00000531110 PCNX4Q63HM2 1172 aa8.09□□□□□ -1.11
CD44-231ENST00000531110 CCDC86Q9H6F5 360 aaKnown RBP8.09□□□□□ -1.11
CD44-231ENST00000531110 TPSG1Q9NRR2 321 aa8.09□□□□□ -1.11
CD44-231ENST00000531110 PAGE1O75459 146 aa8.08□□□□□ -1.12
CD44-231ENST00000531110 PWP1Q13610 501 aa8.08□□□□□ -1.12
CD44-231ENST00000531110 PDE3AQ14432 1141 aa8.08□□□□□ -1.12
CD44-231ENST00000531110 LLGL2Q6P1M3 1020 aa8.08□□□□□ -1.12
CD44-231ENST00000531110 STK35Q8TDR2 534 aa8.08□□□□□ -1.12
CD44-231ENST00000531110 MYRFLQ96LU7 910 aa8.08□□□□□ -1.12
CD44-231ENST00000531110 UBL7Q96S82 380 aaPredicted RBP8.08□□□□□ -1.12
CD44-231ENST00000531110 WDR18Q9BV38 432 aa8.08□□□□□ -1.12
CD44-231ENST00000531110 GSX1Q9H4S2 264 aaPredicted RBP8.08□□□□□ -1.12
CD44-231ENST00000531110 METTL5Q9NRN9 209 aaKnown RBP8.08□□□□□ -1.12
CD44-231ENST00000531110 AOC2O75106 756 aa8.07□□□□□ -1.12
CD44-231ENST00000531110 ECEL1O95672 775 aa8.07□□□□□ -1.12
CD44-231ENST00000531110 SLFN14P0C7P3 912 aa8.07□□□□□ -1.12
CD44-231ENST00000531110 ADH5P11766 374 aa8.07□□□□□ -1.12
CD44-231ENST00000531110 SOX4Q06945 474 aaPredicted RBP8.07□□□□□ -1.12
CD44-231ENST00000531110 TTBK2Q6IQ55 1244 aa8.07□□□□□ -1.12
CD44-231ENST00000531110 AGMOQ6ZNB7 445 aa8.07□□□□□ -1.12
CD44-231ENST00000531110 RSRP1Q9BUV0 290 aa8.07□□□□□ -1.12
CD44-231ENST00000531110 SART1O43290 800 aaKnown RBP8.06□□□□□ -1.12
CD44-231ENST00000531110 PREPP48147 710 aa8.06□□□□□ -1.12
CD44-231ENST00000531110 LIG3P49916 1009 aa8.06□□□□□ -1.12
CD44-231ENST00000531110 NKAPLQ5M9Q1 402 aa8.06□□□□□ -1.12
CD44-231ENST00000531110 LDLRAD1Q5T700 205 aa8.06□□□□□ -1.12
CD44-231ENST00000531110 CCDC84Q86UT8 332 aaPredicted RBP8.06□□□□□ -1.12
CD44-231ENST00000531110 SLC51AQ86UW1 340 aa8.06□□□□□ -1.12
CD44-231ENST00000531110 RAD18Q9NS91 495 aa8.06□□□□□ -1.12
CD44-231ENST00000531110 PCDHGC5Q9Y5F6 944 aa8.06□□□□□ -1.12
CD44-231ENST00000531110 DHX15O43143 795 aaKnown RBP8.05□□□□□ -1.12
CD44-231ENST00000531110 ZNF862O60290 1169 aa8.05□□□□□ -1.12
CD44-231ENST00000531110 ERMP1Q7Z2K6 904 aa8.05□□□□□ -1.12
CD44-231ENST00000531110 ARMC10Q8N2F6 343 aa8.05□□□□□ -1.12
CD44-231ENST00000531110 C12orf50Q8NA57 414 aaPredicted RBP8.05□□□□□ -1.12
CD44-231ENST00000531110 C2CD4AQ8NCU7 369 aaPredicted RBP8.05□□□□□ -1.12
CD44-231ENST00000531110 KCNB2Q92953 911 aa8.05□□□□□ -1.12
CD44-231ENST00000531110 UTP4Q969X6 686 aaKnown RBP8.05□□□□□ -1.12
CD44-231ENST00000531110 TP53INP1Q96A56 240 aa8.05□□□□□ -1.12
CD44-231ENST00000531110 CBX8Q9HC52 389 aa8.05□□□□□ -1.12
CD44-231ENST00000531110 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP8.04□□□□□ -1.12
CD44-231ENST00000531110 RSPO4Q2I0M5 234 aaPredicted RBP8.04□□□□□ -1.12
CD44-231ENST00000531110 MAP1SQ66K74 1059 aaPredicted RBP8.04□□□□□ -1.12
CD44-231ENST00000531110 MRRFQ96E11 262 aaKnown RBP8.04□□□□□ -1.12
CD44-231ENST00000531110 BACH2Q9BYV9 841 aa8.04□□□□□ -1.12
CD44-231ENST00000531110 CRIM1Q9NZV1 1036 aa8.04□□□□□ -1.12
CD44-231ENST00000531110 GAS2O43903 313 aaKnown RBP8.03□□□□□ -1.12
CD44-231ENST00000531110 RECKO95980 971 aa8.03□□□□□ -1.12
CD44-231ENST00000531110 ERVK-24P63145 666 aa8.03□□□□□ -1.12
CD44-231ENST00000531110 ID3Q02535 119 aa8.03□□□□□ -1.12
CD44-231ENST00000531110 DOC2BQ14184 412 aa8.03□□□□□ -1.12
CD44-231ENST00000531110 ZC3H12AQ5D1E8 599 aaKnown RBP8.03□□□□□ -1.12
CD44-231ENST00000531110 RASIP1Q5U651 963 aa8.03□□□□□ -1.12
CD44-231ENST00000531110 PRR23CQ6ZRP0 262 aa8.03□□□□□ -1.12
CD44-231ENST00000531110 HS2ST1Q7LGA3 356 aa8.03□□□□□ -1.12
CD44-231ENST00000531110 FAM20CQ8IXL6 584 aa8.03□□□□□ -1.12
CD44-231ENST00000531110 PHC3Q8NDX5 983 aa8.03□□□□□ -1.12
CD44-231ENST00000531110 GPBAR1Q8TDU6 330 aa8.03□□□□□ -1.12
CD44-231ENST00000531110 EZH1Q92800 747 aaPredicted RBP8.03□□□□□ -1.12
CD44-231ENST00000531110 GAL3ST3Q96A11 431 aa8.03□□□□□ -1.12
CD44-231ENST00000531110 YIPF2Q9BWQ6 316 aa8.03□□□□□ -1.12
CD44-231ENST00000531110 ATXN3LQ9H3M9 355 aa8.03□□□□□ -1.12
CD44-231ENST00000531110 SCAMP3O14828 347 aaKnown RBP8.02□□□□□ -1.13
CD44-231ENST00000531110 TMPRSS2O15393 492 aa8.02□□□□□ -1.13
CD44-231ENST00000531110 LIG1P18858 919 aa8.02□□□□□ -1.13
CD44-231ENST00000531110 DIEXFQ68CQ4 756 aaKnown RBP8.02□□□□□ -1.13
CD44-231ENST00000531110 TRIM42Q8IWZ5 723 aa8.02□□□□□ -1.13
CD44-231ENST00000531110 TMEM87AQ8NBN3 555 aa8.02□□□□□ -1.13
CD44-231ENST00000531110 GRIN3AQ8TCU5 1115 aa8.02□□□□□ -1.13
CD44-231ENST00000531110 TMEM74Q96NL1 305 aa8.02□□□□□ -1.13
CD44-231ENST00000531110 RAXQ9Y2V3 346 aa8.02□□□□□ -1.13
CD44-231ENST00000531110 TACC3Q9Y6A5 838 aa8.02□□□□□ -1.13
CD44-231ENST00000531110 GSC2O15499 205 aa8.01□□□□□ -1.13
CD44-231ENST00000531110 LMNB1P20700 586 aa8.01□□□□□ -1.13
CD44-231ENST00000531110 LMNB2Q03252 620 aa8.01□□□□□ -1.13
CD44-231ENST00000531110 AKAP4Q5JQC9 854 aa8.01□□□□□ -1.13
CD44-231ENST00000531110 CLEC10AQ8IUN9 316 aa8.01□□□□□ -1.13
CD44-231ENST00000531110 RELL1Q8IUW5 271 aa8.01□□□□□ -1.13
CD44-231ENST00000531110 WDR89Q96FK6 387 aaPredicted RBP8.01□□□□□ -1.13
CD44-231ENST00000531110 ACSBG1Q96GR2 724 aa8.01□□□□□ -1.13
CD44-231ENST00000531110 RHOVQ96L33 236 aa8.01□□□□□ -1.13
CD44-231ENST00000531110 ZC3H12CQ9C0D7 883 aaKnown RBP8.01□□□□□ -1.13
CD44-231ENST00000531110 MIR1-1HGQ9H1L0 117 aa8.01□□□□□ -1.13
CD44-231ENST00000531110 KCNQ5Q9NR82 932 aa8.01□□□□□ -1.13
CD44-231ENST00000531110 KIAA1522Q9P206 1035 aaPredicted RBP8.01□□□□□ -1.13
CD44-231ENST00000531110 ACTL7BQ9Y614 415 aa8.01□□□□□ -1.13
CD44-231ENST00000531110 UNCXA6NJT0 531 aa8□□□□□ -1.13
CD44-231ENST00000531110 DYRK3O43781 588 aa8□□□□□ -1.13
CD44-231ENST00000531110 BMP3P12645 472 aa8□□□□□ -1.13
CD44-231ENST00000531110 DRD2P14416 443 aa8□□□□□ -1.13
CD44-231ENST00000531110 ZNF76P36508 570 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms