RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 SLF2Q8IX21 1173 aa16.4■□□□□ 0.22
VPS28-211ENST00000530790 ELP3Q9H9T3 547 aa16.4■□□□□ 0.22
VPS28-211ENST00000530790 CSADQ9Y600 493 aa16.4■□□□□ 0.22
VPS28-211ENST00000530790 LAMB1P07942 1786 aa16.39■□□□□ 0.21
VPS28-211ENST00000530790 ALDH1A1P00352 501 aa16.39■□□□□ 0.21
VPS28-211ENST00000530790 ARID4AP29374 1257 aaPredicted RBP16.39■□□□□ 0.21
VPS28-211ENST00000530790 DGKZQ13574 1117 aa16.39■□□□□ 0.21
VPS28-211ENST00000530790 DCAF15Q66K64 600 aa16.39■□□□□ 0.21
VPS28-211ENST00000530790 SPATA5Q8NB90 893 aa16.39■□□□□ 0.21
VPS28-211ENST00000530790 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.39■□□□□ 0.21
VPS28-211ENST00000530790 MCOLN1Q9GZU1 580 aa16.39■□□□□ 0.21
VPS28-211ENST00000530790 GPR108Q9NPR9 543 aa16.39■□□□□ 0.21
VPS28-211ENST00000530790 GAKO14976 1311 aa16.39■□□□□ 0.21
VPS28-211ENST00000530790 TBC1D8O95759 1140 aa16.38■□□□□ 0.21
VPS28-211ENST00000530790 UQCRFS1P1P0C7P4 283 aa16.38■□□□□ 0.21
VPS28-211ENST00000530790 INHBEP58166 350 aa16.38■□□□□ 0.21
VPS28-211ENST00000530790 VGLL4Q14135 290 aa16.38■□□□□ 0.21
VPS28-211ENST00000530790 TNNI3KQ59H18 835 aa16.38■□□□□ 0.21
VPS28-211ENST00000530790 CEP85Q6P2H3 762 aa16.38■□□□□ 0.21
VPS28-211ENST00000530790 PI16Q6UXB8 463 aa16.38■□□□□ 0.21
VPS28-211ENST00000530790 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.38■□□□□ 0.21
VPS28-211ENST00000530790 ERICH6Q7L0X2 663 aa16.38■□□□□ 0.21
VPS28-211ENST00000530790 FAM151AQ8WW52 585 aa16.38■□□□□ 0.21
VPS28-211ENST00000530790 OPTNQ96CV9 577 aa16.38■□□□□ 0.21
VPS28-211ENST00000530790 WRNIP1Q96S55 665 aa16.38■□□□□ 0.21
VPS28-211ENST00000530790 USP40Q9NVE5 1235 aa16.38■□□□□ 0.21
VPS28-211ENST00000530790 HMG20BQ9P0W2 317 aa16.38■□□□□ 0.21
VPS28-211ENST00000530790 RCAN3Q9UKA8 241 aa16.38■□□□□ 0.21
VPS28-211ENST00000530790 FPGT-TNNI3KV9GXZ4 949 aa16.38■□□□□ 0.21
VPS28-211ENST00000530790 CASP8AP2Q9UKL3 1982 aa16.38■□□□□ 0.21
VPS28-211ENST00000530790 GJA5P36382 358 aa16.37■□□□□ 0.21
VPS28-211ENST00000530790 MAP3K9P80192 1104 aa16.37■□□□□ 0.21
VPS28-211ENST00000530790 TCP10Q12799 353 aa16.37■□□□□ 0.21
VPS28-211ENST00000530790 NFIAQ12857 509 aa16.37■□□□□ 0.21
VPS28-211ENST00000530790 TTC39AQ5SRH9 613 aa16.37■□□□□ 0.21
VPS28-211ENST00000530790 IFNL1Q8IU54 200 aa16.37■□□□□ 0.21
VPS28-211ENST00000530790 NOP58Q9Y2X3 529 aaKnown RBP16.37■□□□□ 0.21
VPS28-211ENST00000530790 MROH7-TTC4A0A0A0MT08 1334 aa16.37■□□□□ 0.21
VPS28-211ENST00000530790 MCAMP43121 646 aa16.36■□□□□ 0.21
VPS28-211ENST00000530790 BTDP43251 543 aa16.36■□□□□ 0.21
VPS28-211ENST00000530790 MECOMQ03112 1051 aa16.36■□□□□ 0.21
VPS28-211ENST00000530790 CCDC158Q5M9N0 1113 aa16.36■□□□□ 0.21
VPS28-211ENST00000530790 CFHR5Q9BXR6 569 aa16.36■□□□□ 0.21
VPS28-211ENST00000530790 DDX19BQ9UMR2 479 aa16.36■□□□□ 0.21
VPS28-211ENST00000530790 RFX7Q2KHR2 1363 aa16.36■□□□□ 0.21
VPS28-211ENST00000530790 GSTO1P78417 241 aa16.35■□□□□ 0.21
VPS28-211ENST00000530790 NOM1Q5C9Z4 860 aaKnown RBP16.35■□□□□ 0.21
VPS28-211ENST00000530790 OTUD7BQ6GQQ9 843 aa16.35■□□□□ 0.21
VPS28-211ENST00000530790 CTU1Q7Z7A3 348 aaKnown RBP16.35■□□□□ 0.21
VPS28-211ENST00000530790 ZNF296Q8WUU4 475 aaPredicted RBP16.35■□□□□ 0.21
VPS28-211ENST00000530790 OTUD5Q96G74 571 aa16.35■□□□□ 0.21
VPS28-211ENST00000530790 FAM163AQ96GL9 167 aaPredicted RBP16.35■□□□□ 0.21
VPS28-211ENST00000530790 DBNDD2Q9BQY9 259 aa16.35■□□□□ 0.21
VPS28-211ENST00000530790 ZNF341Q9BYN7 854 aa16.35■□□□□ 0.21
VPS28-211ENST00000530790 FAM198AQ9UFP1 575 aa16.35■□□□□ 0.21
VPS28-211ENST00000530790 MYH2Q9UKX2 1941 aa16.35■□□□□ 0.21
VPS28-211ENST00000530790 MAST2Q6P0Q8 1798 aa16.34■□□□□ 0.21
VPS28-211ENST00000530790 SPDYE5A6NIY4 337 aa16.34■□□□□ 0.21
VPS28-211ENST00000530790 GPR25O00155 361 aa16.34■□□□□ 0.21
VPS28-211ENST00000530790 IGF2BP3O00425 579 aaKnown RBP eCLIP16.34■□□□□ 0.21
VPS28-211ENST00000530790 ENTPD3O75355 529 aa16.34■□□□□ 0.21
VPS28-211ENST00000530790 RGS3P49796 1198 aa16.34■□□□□ 0.21
VPS28-211ENST00000530790 MIGA2Q7L4E1 593 aa16.34■□□□□ 0.21
VPS28-211ENST00000530790 ERC1Q8IUD2 1116 aa16.34■□□□□ 0.21
VPS28-211ENST00000530790 CNKSR2Q8WXI2 1034 aa16.34■□□□□ 0.21
VPS28-211ENST00000530790 IDI2Q9BXS1 227 aa16.34■□□□□ 0.21
VPS28-211ENST00000530790 RAI14Q9P0K7 980 aa16.34■□□□□ 0.21
VPS28-211ENST00000530790 COG6Q9Y2V7 657 aa16.34■□□□□ 0.21
VPS28-211ENST00000530790 SNCAIPQ9Y6H5 919 aa16.34■□□□□ 0.21
VPS28-211ENST00000530790 CCDC85CA6NKD9 419 aa16.33■□□□□ 0.2
VPS28-211ENST00000530790 LDHCP07864 332 aa16.33■□□□□ 0.2
VPS28-211ENST00000530790 GTF2A2P52657 109 aa16.33■□□□□ 0.2
VPS28-211ENST00000530790 TBC1D9Q6ZT07 1266 aa16.33■□□□□ 0.2
VPS28-211ENST00000530790 ERO1BQ86YB8 467 aa16.33■□□□□ 0.2
VPS28-211ENST00000530790 ZKSCAN4Q969J2 545 aaPredicted RBP16.33■□□□□ 0.2
VPS28-211ENST00000530790 NSUN4Q96CB9 384 aaKnown RBP16.33■□□□□ 0.2
VPS28-211ENST00000530790 CHMP4BQ9H444 224 aaKnown RBP16.33■□□□□ 0.2
VPS28-211ENST00000530790 LRP2BPQ9P2M1 347 aa16.33■□□□□ 0.2
VPS28-211ENST00000530790 EXOC6BQ9Y2D4 811 aa16.33■□□□□ 0.2
VPS28-211ENST00000530790 TESPA1A2RU30 521 aaPredicted RBP16.32■□□□□ 0.2
VPS28-211ENST00000530790 PICALMQ13492 652 aa16.32■□□□□ 0.2
VPS28-211ENST00000530790 HSP90AB4PQ58FF6 505 aa16.32■□□□□ 0.2
VPS28-211ENST00000530790 DOCK2Q92608 1830 aa16.32■□□□□ 0.2
VPS28-211ENST00000530790 MS4A4AQ96JQ5 239 aa16.32■□□□□ 0.2
VPS28-211ENST00000530790 SNRKQ9NRH2 765 aa16.32■□□□□ 0.2
VPS28-211ENST00000530790 TLR7Q9NYK1 1049 aaKnown RBP16.32■□□□□ 0.2
VPS28-211ENST00000530790 DBNLQ9UJU6 430 aaKnown RBP16.32■□□□□ 0.2
VPS28-211ENST00000530790 GPR75-ASB3A0A0A6YYF3 556 aa16.31■□□□□ 0.2
VPS28-211ENST00000530790 CCL15-CCL14A0A0B4J2E2 113 aa16.31■□□□□ 0.2
VPS28-211ENST00000530790 FKTNO75072 461 aa16.31■□□□□ 0.2
VPS28-211ENST00000530790 HMMRO75330 724 aa16.31■□□□□ 0.2
VPS28-211ENST00000530790 WDHD1O75717 1129 aaPredicted RBP16.31■□□□□ 0.2
VPS28-211ENST00000530790 INPP5BP32019 993 aa16.31■□□□□ 0.2
VPS28-211ENST00000530790 CCL15Q16663 113 aa16.31■□□□□ 0.2
VPS28-211ENST00000530790 ZSCAN29Q8IWY8 852 aaPredicted RBP16.31■□□□□ 0.2
VPS28-211ENST00000530790 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.31■□□□□ 0.2
VPS28-211ENST00000530790 ZNF384Q8TF68 577 aa16.31■□□□□ 0.2
VPS28-211ENST00000530790 ZNF512BQ96KM6 892 aaPredicted RBP16.31■□□□□ 0.2
VPS28-211ENST00000530790 NOL10Q9BSC4 688 aaKnown RBP16.31■□□□□ 0.2
VPS28-211ENST00000530790 ATRNL1Q5VV63 1379 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms