RNA–Protein interactions for RNA: ENST00000530660.5

PCF11-204, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 2

Gene PCF11, Length 3,309 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-204ENST00000530660 CCDC175P0C221 793 aa16.1■□□□□ 0.17
PCF11-204ENST00000530660 MYL5Q02045 173 aa16.1■□□□□ 0.17
PCF11-204ENST00000530660 STIM1Q13586 685 aa16.1■□□□□ 0.17
PCF11-204ENST00000530660 SF3A1Q15459 793 aaKnown RBP16.1■□□□□ 0.17
PCF11-204ENST00000530660 ADALQ6DHV7 355 aa16.1■□□□□ 0.17
PCF11-204ENST00000530660 FMNL3Q8IVF7 1028 aa16.1■□□□□ 0.17
PCF11-204ENST00000530660 ZNF396Q96N95 335 aaPredicted RBP16.1■□□□□ 0.17
PCF11-204ENST00000530660 CLNS1AP54105 237 aaKnown RBP16.1■□□□□ 0.17
PCF11-204ENST00000530660 SLC35F6Q8N357 371 aa16.1■□□□□ 0.17
PCF11-204ENST00000530660 HINFPQ9BQA5 517 aa16.1■□□□□ 0.17
PCF11-204ENST00000530660 KLC4Q9NSK0 619 aa16.1■□□□□ 0.17
PCF11-204ENST00000530660 EPB41L3Q9Y2J2 1087 aaPredicted RBP16.1■□□□□ 0.17
PCF11-204ENST00000530660 ARHGEF10O15013 1369 aa16.1■□□□□ 0.17
PCF11-204ENST00000530660 MLH3Q9UHC1 1453 aa16.1■□□□□ 0.17
PCF11-204ENST00000530660 AGPSO00116 658 aa16.09■□□□□ 0.17
PCF11-204ENST00000530660 EIF3HO15372 352 aaKnown RBP eCLIP16.09■□□□□ 0.17
PCF11-204ENST00000530660 IRX1P78414 480 aaPredicted RBP16.09■□□□□ 0.17
PCF11-204ENST00000530660 TBX2Q13207 712 aaPredicted RBP16.09■□□□□ 0.17
PCF11-204ENST00000530660 POLA2Q14181 598 aa16.09■□□□□ 0.17
PCF11-204ENST00000530660 Q6ZUG5 572 aa16.09■□□□□ 0.17
PCF11-204ENST00000530660 POLD4Q9HCU8 107 aa16.09■□□□□ 0.17
PCF11-204ENST00000530660 TMEM131LA2VDJ0 1609 aa16.09■□□□□ 0.17
PCF11-204ENST00000530660 SETD1BQ9UPS6 1966 aaKnown RBP16.09■□□□□ 0.17
PCF11-204ENST00000530660 A0A0D9SFI3 127 aa16.09■□□□□ 0.17
PCF11-204ENST00000530660 PFKFB2O60825 505 aa16.09■□□□□ 0.17
PCF11-204ENST00000530660 RTN2O75298 545 aa16.09■□□□□ 0.17
PCF11-204ENST00000530660 A1BGP04217 495 aa16.09■□□□□ 0.17
PCF11-204ENST00000530660 PHAXQ9H814 394 aaKnown RBP16.09■□□□□ 0.17
PCF11-204ENST00000530660 VIPAS39Q9H9C1 493 aa16.09■□□□□ 0.17
PCF11-204ENST00000530660 MAP3K19Q56UN5 1328 aa16.09■□□□□ 0.17
PCF11-204ENST00000530660 CTAGE9A4FU28 777 aa16.09■□□□□ 0.17
PCF11-204ENST00000530660 KIAA0754O94854 1291 aa16.09■□□□□ 0.17
PCF11-204ENST00000530660 OS9Q13438 667 aaPredicted RBP16.09■□□□□ 0.17
PCF11-204ENST00000530660 CRYMQ14894 314 aa16.09■□□□□ 0.17
PCF11-204ENST00000530660 ZNF483Q8TF39 744 aaPredicted RBP16.09■□□□□ 0.17
PCF11-204ENST00000530660 CLIC4Q9Y696 253 aa16.09■□□□□ 0.17
PCF11-204ENST00000530660 NBPF7P0C2Y1 421 aaPredicted RBP16.08■□□□□ 0.17
PCF11-204ENST00000530660 ERCC3P19447 782 aa16.08■□□□□ 0.17
PCF11-204ENST00000530660 RAD9BQ6WBX8 426 aa16.08■□□□□ 0.17
PCF11-204ENST00000530660 AMOTL1Q8IY63 956 aa16.08■□□□□ 0.17
PCF11-204ENST00000530660 DDX20Q9UHI6 824 aaKnown RBP16.08■□□□□ 0.17
PCF11-204ENST00000530660 NPHP4O75161 1426 aaPredicted RBP16.08■□□□□ 0.16
PCF11-204ENST00000530660 XRN1Q8IZH2 1706 aaKnown RBP16.08■□□□□ 0.16
PCF11-204ENST00000530660 FSBPO95073 299 aa16.08■□□□□ 0.16
PCF11-204ENST00000530660 ZBTB12Q9Y330 459 aaPredicted RBP16.08■□□□□ 0.16
PCF11-204ENST00000530660 NDUFAB1O14561 156 aa16.07■□□□□ 0.16
PCF11-204ENST00000530660 CEP85LQ5SZL2 805 aa16.07■□□□□ 0.16
PCF11-204ENST00000530660 COG1Q8WTW3 980 aa16.07■□□□□ 0.16
PCF11-204ENST00000530660 BORCS6Q96GS4 357 aa16.07■□□□□ 0.16
PCF11-204ENST00000530660 ADGRG1Q9Y653 693 aa16.07■□□□□ 0.16
PCF11-204ENST00000530660 SSBP05455 408 aaKnown RBP eCLIP16.07■□□□□ 0.16
PCF11-204ENST00000530660 PDHBP11177 359 aa16.07■□□□□ 0.16
PCF11-204ENST00000530660 CCT2P78371 535 aaKnown RBP16.07■□□□□ 0.16
PCF11-204ENST00000530660 PPFIA1Q13136 1202 aa16.07■□□□□ 0.16
PCF11-204ENST00000530660 STK38Q15208 465 aa16.07■□□□□ 0.16
PCF11-204ENST00000530660 WLSQ5T9L3 541 aa16.07■□□□□ 0.16
PCF11-204ENST00000530660 CRACR2AQ9BSW2 395 aa16.07■□□□□ 0.16
PCF11-204ENST00000530660 CTDNEP1O95476 244 aa16.07■□□□□ 0.16
PCF11-204ENST00000530660 POLR3DP05423 398 aaPredicted RBP16.07■□□□□ 0.16
PCF11-204ENST00000530660 MRPL12P52815 198 aaKnown RBP16.07■□□□□ 0.16
PCF11-204ENST00000530660 E2F5Q15329 346 aa16.07■□□□□ 0.16
PCF11-204ENST00000530660 OTUD7BQ6GQQ9 843 aa16.07■□□□□ 0.16
PCF11-204ENST00000530660 NAA16Q6N069 864 aaPredicted RBP16.07■□□□□ 0.16
PCF11-204ENST00000530660 WDR93Q6P2C0 686 aa16.07■□□□□ 0.16
PCF11-204ENST00000530660 CPLX3Q8WVH0 158 aa16.07■□□□□ 0.16
PCF11-204ENST00000530660 CCDC61Q9Y6R9 512 aa16.07■□□□□ 0.16
PCF11-204ENST00000530660 NUTM2FA1L443 756 aa16.06■□□□□ 0.16
PCF11-204ENST00000530660 MEFVO15553 781 aaPredicted RBP16.06■□□□□ 0.16
PCF11-204ENST00000530660 RPSAP08865 295 aaKnown RBP16.06■□□□□ 0.16
PCF11-204ENST00000530660 NAA25Q14CX7 972 aa16.06■□□□□ 0.16
PCF11-204ENST00000530660 NUTM2GQ5VZR2 741 aa16.06■□□□□ 0.16
PCF11-204ENST00000530660 SPECC1LQ69YQ0 1117 aa16.06■□□□□ 0.16
PCF11-204ENST00000530660 ZNF589Q86UQ0 364 aaPredicted RBP16.06■□□□□ 0.16
PCF11-204ENST00000530660 TXNDC2Q86VQ3 553 aa16.06■□□□□ 0.16
PCF11-204ENST00000530660 NSUN7Q8NE18 718 aaKnown RBP16.06■□□□□ 0.16
PCF11-204ENST00000530660 NCOA5Q9HCD5 579 aaKnown RBP16.06■□□□□ 0.16
PCF11-204ENST00000530660 RIMS1Q86UR5 1692 aaKnown RBP16.06■□□□□ 0.16
PCF11-204ENST00000530660 PTPDC1A2A3K4 754 aa16.06■□□□□ 0.16
PCF11-204ENST00000530660 MPHOSPH10O00566 681 aaKnown RBP16.06■□□□□ 0.16
PCF11-204ENST00000530660 MYBL2P10244 700 aa16.06■□□□□ 0.16
PCF11-204ENST00000530660 MYH15Q9Y2K3 1946 aa16.06■□□□□ 0.16
PCF11-204ENST00000530660 PEX19P40855 299 aa16.06■□□□□ 0.16
PCF11-204ENST00000530660 GRIK3Q13003 919 aa16.06■□□□□ 0.16
PCF11-204ENST00000530660 RNF187Q5TA31 235 aaPredicted RBP16.06■□□□□ 0.16
PCF11-204ENST00000530660 NRKQ7Z2Y5 1582 aa16.05■□□□□ 0.16
PCF11-204ENST00000530660 DLC1Q96QB1 1528 aa16.05■□□□□ 0.16
PCF11-204ENST00000530660 PNOCQ13519 176 aa16.05■□□□□ 0.16
PCF11-204ENST00000530660 LINC00301Q8NCQ3 95 aa16.05■□□□□ 0.16
PCF11-204ENST00000530660 SMARCC2Q8TAQ2 1214 aa16.05■□□□□ 0.16
PCF11-204ENST00000530660 KIF9Q9HAQ2 790 aa16.05■□□□□ 0.16
PCF11-204ENST00000530660 GCKP35557 465 aa16.05■□□□□ 0.16
PCF11-204ENST00000530660 PDCLQ13371 301 aa16.05■□□□□ 0.16
PCF11-204ENST00000530660 CCDC148Q8NFR7 591 aa16.05■□□□□ 0.16
PCF11-204ENST00000530660 ECHDC1Q9NTX5 307 aa16.05■□□□□ 0.16
PCF11-204ENST00000530660 MAP3K5Q99683 1374 aa16.05■□□□□ 0.16
PCF11-204ENST00000530660 A0A1W2PQ27 194 aa16.04■□□□□ 0.16
PCF11-204ENST00000530660 A0A1W2PQ64 194 aa16.04■□□□□ 0.16
PCF11-204ENST00000530660 A0A1W2PQD8 194 aa16.04■□□□□ 0.16
PCF11-204ENST00000530660 PPP1R12BO60237 982 aaPredicted RBP16.04■□□□□ 0.16
PCF11-204ENST00000530660 PFKFB1P16118 471 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms