RNA–Protein interactions for RNA: ENST00000529526.5

CTNND1-220, Transcript of catenin delta 1, humanhuman

TSL 1 (best) BASIC

Gene CTNND1, Length 6,099 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNND1-220ENST00000529526 PRDM1O75626 825 aa9.16□□□□□ -0.94
CTNND1-220ENST00000529526 C6orf163Q5TEZ5 329 aa9.16□□□□□ -0.94
CTNND1-220ENST00000529526 PLBD2Q8NHP8 589 aa9.16□□□□□ -0.94
CTNND1-220ENST00000529526 VPS16Q9H269 839 aa9.16□□□□□ -0.94
CTNND1-220ENST00000529526 USP19O94966 1318 aa9.16□□□□□ -0.94
CTNND1-220ENST00000529526 HARSP12081 509 aaKnown RBP9.15□□□□□ -0.94
CTNND1-220ENST00000529526 HS2ST1Q7LGA3 356 aa9.15□□□□□ -0.94
CTNND1-220ENST00000529526 FBF1Q8TES7 1133 aa9.15□□□□□ -0.94
CTNND1-220ENST00000529526 CCDC114Q96M63 670 aa9.15□□□□□ -0.94
CTNND1-220ENST00000529526 RBSNQ9H1K0 784 aa9.15□□□□□ -0.94
CTNND1-220ENST00000529526 LUC7L2Q9Y383 392 aaKnown RBP9.15□□□□□ -0.94
CTNND1-220ENST00000529526 TRPM2O94759 1503 aa9.15□□□□□ -0.94
CTNND1-220ENST00000529526 EYA2O00167 538 aa9.15□□□□□ -0.94
CTNND1-220ENST00000529526 BACH1O14867 736 aa9.15□□□□□ -0.94
CTNND1-220ENST00000529526 KRT5P13647 590 aa9.15□□□□□ -0.94
CTNND1-220ENST00000529526 IL13P35225 146 aa9.15□□□□□ -0.94
CTNND1-220ENST00000529526 NSRP1Q9H0G5 558 aaKnown RBP9.15□□□□□ -0.94
CTNND1-220ENST00000529526 MRPS9P82933 396 aaKnown RBP9.15□□□□□ -0.94
CTNND1-220ENST00000529526 TRAPPC3LQ5T215 181 aa9.15□□□□□ -0.94
CTNND1-220ENST00000529526 SUCLG2Q96I99 432 aa9.15□□□□□ -0.94
CTNND1-220ENST00000529526 BAG1Q99933 345 aaPredicted RBP9.15□□□□□ -0.94
CTNND1-220ENST00000529526 C19orf44Q9H6X5 657 aa9.15□□□□□ -0.94
CTNND1-220ENST00000529526 TEX14Q8IWB6 1497 aa9.15□□□□□ -0.94
CTNND1-220ENST00000529526 AKR1B15C9JRZ8 316 aaPredicted RBP9.15□□□□□ -0.94
CTNND1-220ENST00000529526 HSPA4P34932 840 aa9.15□□□□□ -0.94
CTNND1-220ENST00000529526 FAM160A1Q05DH4 1040 aa9.15□□□□□ -0.94
CTNND1-220ENST00000529526 PUM3Q15397 648 aaKnown RBP9.15□□□□□ -0.94
CTNND1-220ENST00000529526 FCHSD1Q86WN1 690 aa9.15□□□□□ -0.94
CTNND1-220ENST00000529526 NOC4LQ9BVI4 516 aaKnown RBP9.15□□□□□ -0.94
CTNND1-220ENST00000529526 AATFQ9NY61 560 aaKnown RBP eCLIP9.15□□□□□ -0.94
CTNND1-220ENST00000529526 PNMA6EA0A0J9YXQ4 647 aa9.15□□□□□ -0.95
CTNND1-220ENST00000529526 PDE4DQ08499 809 aa9.15□□□□□ -0.95
CTNND1-220ENST00000529526 PPP1R7Q15435 360 aa9.15□□□□□ -0.95
CTNND1-220ENST00000529526 SSX2IPQ9Y2D8 614 aa9.15□□□□□ -0.95
CTNND1-220ENST00000529526 V9GY48 417 aaPredicted RBP9.15□□□□□ -0.95
CTNND1-220ENST00000529526 TRAF5O00463 557 aa9.14□□□□□ -0.95
CTNND1-220ENST00000529526 MYL5Q02045 173 aa9.14□□□□□ -0.95
CTNND1-220ENST00000529526 ZYXQ15942 572 aaKnown RBP9.14□□□□□ -0.95
CTNND1-220ENST00000529526 CCDC122Q5T0U0 273 aa9.14□□□□□ -0.95
CTNND1-220ENST00000529526 APBB1IPQ7Z5R6 666 aaPredicted RBP9.14□□□□□ -0.95
CTNND1-220ENST00000529526 DDX12PQ92771 950 aa9.14□□□□□ -0.95
CTNND1-220ENST00000529526 TLDC2A0PJX2 215 aa9.14□□□□□ -0.95
CTNND1-220ENST00000529526 ZEB2O60315 1214 aa9.14□□□□□ -0.95
CTNND1-220ENST00000529526 HIBADHP31937 336 aaKnown RBP9.14□□□□□ -0.95
CTNND1-220ENST00000529526 ATP6V0A2Q9Y487 856 aa9.14□□□□□ -0.95
CTNND1-220ENST00000529526 GPAA1O43292 621 aa9.14□□□□□ -0.95
CTNND1-220ENST00000529526 A1BGP04217 495 aa9.14□□□□□ -0.95
CTNND1-220ENST00000529526 CAPN2P17655 700 aa9.14□□□□□ -0.95
CTNND1-220ENST00000529526 ERCC3P19447 782 aa9.14□□□□□ -0.95
CTNND1-220ENST00000529526 RNASE9P60153 205 aaKnown RBP9.14□□□□□ -0.95
CTNND1-220ENST00000529526 ANO1Q5XXA6 986 aa9.14□□□□□ -0.95
CTNND1-220ENST00000529526 TRIM35Q9UPQ4 493 aa9.14□□□□□ -0.95
CTNND1-220ENST00000529526 MNAT1P51948 309 aa9.14□□□□□ -0.95
CTNND1-220ENST00000529526 CCDC65Q8IXS2 484 aa9.14□□□□□ -0.95
CTNND1-220ENST00000529526 CNBD1Q8NA66 436 aa9.14□□□□□ -0.95
CTNND1-220ENST00000529526 PPM1EQ8WY54 764 aa9.14□□□□□ -0.95
CTNND1-220ENST00000529526 JDP2Q8WYK2 163 aa9.14□□□□□ -0.95
CTNND1-220ENST00000529526 PHKBQ93100 1093 aa9.14□□□□□ -0.95
CTNND1-220ENST00000529526 CCDC77Q9BR77 488 aa9.14□□□□□ -0.95
CTNND1-220ENST00000529526 GJA3Q9Y6H8 435 aa9.14□□□□□ -0.95
CTNND1-220ENST00000529526 IGSF3O75054 1194 aa9.14□□□□□ -0.95
CTNND1-220ENST00000529526 DEXIO95424 95 aa9.14□□□□□ -0.95
CTNND1-220ENST00000529526 MSL1Q68DK7 614 aa9.14□□□□□ -0.95
CTNND1-220ENST00000529526 MAEAQ7L5Y9 396 aa9.14□□□□□ -0.95
CTNND1-220ENST00000529526 UBLCP1Q8WVY7 318 aaPredicted RBP9.14□□□□□ -0.95
CTNND1-220ENST00000529526 SREK1Q8WXA9 508 aaKnown RBP9.14□□□□□ -0.95
CTNND1-220ENST00000529526 DDX17Q92841 729 aaKnown RBP9.14□□□□□ -0.95
CTNND1-220ENST00000529526 EYA3Q99504 573 aa9.14□□□□□ -0.95
CTNND1-220ENST00000529526 FAM170AA1A519 330 aa9.13□□□□□ -0.95
CTNND1-220ENST00000529526 POLR2DO15514 142 aaKnown RBP9.13□□□□□ -0.95
CTNND1-220ENST00000529526 TXKP42681 527 aa9.13□□□□□ -0.95
CTNND1-220ENST00000529526 LONRF3Q496Y0 759 aa9.13□□□□□ -0.95
CTNND1-220ENST00000529526 PLCD3Q8N3E9 789 aa9.13□□□□□ -0.95
CTNND1-220ENST00000529526 KCNK9Q9NPC2 374 aa9.13□□□□□ -0.95
CTNND1-220ENST00000529526 DDX39AO00148 427 aaKnown RBP9.13□□□□□ -0.95
CTNND1-220ENST00000529526 IGSF22Q8N9C0 903 aa9.13□□□□□ -0.95
CTNND1-220ENST00000529526 TIGD1Q96MW7 591 aa9.13□□□□□ -0.95
CTNND1-220ENST00000529526 KCNH3Q9ULD8 1083 aa9.13□□□□□ -0.95
CTNND1-220ENST00000529526 FRMD4BQ9Y2L6 1034 aa9.13□□□□□ -0.95
CTNND1-220ENST00000529526 hCG_1642624A0A1W2PR95 340 aa9.13□□□□□ -0.95
CTNND1-220ENST00000529526 GADD45BO75293 160 aaPredicted RBP9.13□□□□□ -0.95
CTNND1-220ENST00000529526 EPB41P11171 864 aaKnown RBP9.13□□□□□ -0.95
CTNND1-220ENST00000529526 MAP3K9P80192 1104 aa9.13□□□□□ -0.95
CTNND1-220ENST00000529526 TTC6Q86TZ1 520 aa9.13□□□□□ -0.95
CTNND1-220ENST00000529526 KIAA0556O60303 1618 aa9.13□□□□□ -0.95
CTNND1-220ENST00000529526 KRT9P35527 623 aa9.13□□□□□ -0.95
CTNND1-220ENST00000529526 CCDC6Q16204 474 aa9.13□□□□□ -0.95
CTNND1-220ENST00000529526 C17orf53Q8N3J3 647 aaPredicted RBP9.13□□□□□ -0.95
CTNND1-220ENST00000529526 TSGA10Q9BZW7 698 aa9.13□□□□□ -0.95
CTNND1-220ENST00000529526 PDE8AO60658 829 aa9.13□□□□□ -0.95
CTNND1-220ENST00000529526 PPP2R3AQ06190 1150 aa9.13□□□□□ -0.95
CTNND1-220ENST00000529526 NCBP1Q09161 790 aaKnown RBP9.13□□□□□ -0.95
CTNND1-220ENST00000529526 CNGA4Q8IV77 575 aa9.13□□□□□ -0.95
CTNND1-220ENST00000529526 GTF3C6Q969F1 213 aa9.13□□□□□ -0.95
CTNND1-220ENST00000529526 TBC1D7Q9P0N9 293 aa9.13□□□□□ -0.95
CTNND1-220ENST00000529526 COL17A1Q9UMD9 1497 aaPredicted RBP9.13□□□□□ -0.95
CTNND1-220ENST00000529526 TCOF1Q13428 1488 aaKnown RBP9.12□□□□□ -0.95
CTNND1-220ENST00000529526 ZMYM3Q14202 1370 aa9.12□□□□□ -0.95
CTNND1-220ENST00000529526 CCDC169A6NNP5 214 aa9.12□□□□□ -0.95
CTNND1-220ENST00000529526 ATP2A1O14983 1001 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 86.3 ms