RNA–Protein interactions for RNA: ENST00000525469.1

CD44-218, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 705 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-218ENST00000525469 SRP68Q9UHB9 627 aaKnown RBP6.44□□□□□ -1.38
CD44-218ENST00000525469 HACL1Q9UJ83 578 aa6.44□□□□□ -1.38
CD44-218ENST00000525469 RTL1A6NKG5 1358 aa6.44□□□□□ -1.38
CD44-218ENST00000525469 ZNF831Q5JPB2 1677 aa6.43□□□□□ -1.38
CD44-218ENST00000525469 AKAP11Q9UKA4 1901 aa6.43□□□□□ -1.38
CD44-218ENST00000525469 USP17L5A8MUK1 530 aa6.43□□□□□ -1.38
CD44-218ENST00000525469 BACH1O14867 736 aa6.43□□□□□ -1.38
CD44-218ENST00000525469 C21orf2O43822 256 aa6.43□□□□□ -1.38
CD44-218ENST00000525469 F11P03951 625 aa6.43□□□□□ -1.38
CD44-218ENST00000525469 INHAP05111 366 aa6.43□□□□□ -1.38
CD44-218ENST00000525469 HSP90AA1P07900 732 aaKnown RBP6.43□□□□□ -1.38
CD44-218ENST00000525469 HMGB1P09429 215 aaKnown RBP6.43□□□□□ -1.38
CD44-218ENST00000525469 PDIA4P13667 645 aaKnown RBP6.43□□□□□ -1.38
CD44-218ENST00000525469 ATP1A2P50993 1020 aa6.43□□□□□ -1.38
CD44-218ENST00000525469 FGD1P98174 961 aa6.43□□□□□ -1.38
CD44-218ENST00000525469 LBRQ14739 615 aaKnown RBP6.43□□□□□ -1.38
CD44-218ENST00000525469 MAP1SQ66K74 1059 aaPredicted RBP6.43□□□□□ -1.38
CD44-218ENST00000525469 CYP4F22Q6NT55 531 aa6.43□□□□□ -1.38
CD44-218ENST00000525469 PGBD3Q8N328 593 aa6.43□□□□□ -1.38
CD44-218ENST00000525469 TAOK3Q9H2K8 898 aa6.43□□□□□ -1.38
CD44-218ENST00000525469 NSFL1CQ9UNZ2 370 aaKnown RBP6.43□□□□□ -1.38
CD44-218ENST00000525469 USP42Q9H9J4 1324 aaKnown RBP6.43□□□□□ -1.38
CD44-218ENST00000525469 ANP32CO43423 234 aa6.42□□□□□ -1.38
CD44-218ENST00000525469 FBLN1P23142 703 aa6.42□□□□□ -1.38
CD44-218ENST00000525469 TM4SF1P30408 202 aa6.42□□□□□ -1.38
CD44-218ENST00000525469 EPHX2P34913 555 aa6.42□□□□□ -1.38
CD44-218ENST00000525469 NCOA4Q13772 614 aa6.42□□□□□ -1.38
CD44-218ENST00000525469 RRS1Q15050 365 aaKnown RBP6.42□□□□□ -1.38
CD44-218ENST00000525469 TSGA10IPQ3SY00 556 aa6.42□□□□□ -1.38
CD44-218ENST00000525469 IFNL2Q8IZJ0 200 aa6.42□□□□□ -1.38
CD44-218ENST00000525469 ZNF837Q96EG3 531 aaPredicted RBP6.42□□□□□ -1.38
CD44-218ENST00000525469 CNTNAP3BQ96NU0 1288 aa6.42□□□□□ -1.38
CD44-218ENST00000525469 MAP7D2Q96T17 732 aa6.42□□□□□ -1.38
CD44-218ENST00000525469 CNTNAP3Q9BZ76 1288 aa6.42□□□□□ -1.38
CD44-218ENST00000525469 SLC12A5Q9H2X9 1139 aa6.42□□□□□ -1.38
CD44-218ENST00000525469 DDX21Q9NR30 783 aaKnown RBP eCLIP6.42□□□□□ -1.38
CD44-218ENST00000525469 HRH3Q9Y5N1 445 aa6.42□□□□□ -1.38
CD44-218ENST00000525469 THSD7BQ9C0I4 1608 aa6.42□□□□□ -1.38
CD44-218ENST00000525469 A6NJR5 290 aa6.41□□□□□ -1.38
CD44-218ENST00000525469 PIK3CDO00329 1044 aa6.41□□□□□ -1.38
CD44-218ENST00000525469 SERPINB2P05120 415 aa6.41□□□□□ -1.38
CD44-218ENST00000525469 CRKLP46109 303 aaKnown RBP6.41□□□□□ -1.38
CD44-218ENST00000525469 GTF2IP78347 998 aa6.41□□□□□ -1.38
CD44-218ENST00000525469 HABP4Q5JVS0 413 aaKnown RBP6.41□□□□□ -1.38
CD44-218ENST00000525469 L1TD1Q5T7N2 865 aaKnown RBP6.41□□□□□ -1.38
CD44-218ENST00000525469 SOGA3Q5TF21 947 aa6.41□□□□□ -1.38
CD44-218ENST00000525469 HDGFL1Q5TGJ6 251 aa6.41□□□□□ -1.38
CD44-218ENST00000525469 USPL1Q5W0Q7 1092 aa6.41□□□□□ -1.38
CD44-218ENST00000525469 TBC1D9Q6ZT07 1266 aa6.41□□□□□ -1.38
CD44-218ENST00000525469 PLEKHM2Q8IWE5 1019 aa6.41□□□□□ -1.38
CD44-218ENST00000525469 C1orf216Q8TAB5 229 aa6.41□□□□□ -1.38
CD44-218ENST00000525469 NIFKQ9BYG3 293 aaKnown RBP6.41□□□□□ -1.38
CD44-218ENST00000525469 NUCKS1Q9H1E3 243 aaKnown RBP6.41□□□□□ -1.38
CD44-218ENST00000525469 PHF24Q9UPV7 400 aa6.41□□□□□ -1.38
CD44-218ENST00000525469 LTBP3Q9NS15 1303 aa6.41□□□□□ -1.38
CD44-218ENST00000525469 RAB3GAP2Q9H2M9 1393 aa6.41□□□□□ -1.38
CD44-218ENST00000525469 LTBP1Q14766 1721 aa6.4□□□□□ -1.38
CD44-218ENST00000525469 POM121CA8CG34 1229 aa6.4□□□□□ -1.38
CD44-218ENST00000525469 DLL1O00548 723 aa6.4□□□□□ -1.38
CD44-218ENST00000525469 NPHP1O15259 732 aa6.4□□□□□ -1.38
CD44-218ENST00000525469 ATP9BO43861 1147 aa6.4□□□□□ -1.38
CD44-218ENST00000525469 AOC2O75106 756 aa6.4□□□□□ -1.38
CD44-218ENST00000525469 PTCD1O75127 700 aaKnown RBP6.4□□□□□ -1.38
CD44-218ENST00000525469 PDE6BP35913 854 aa6.4□□□□□ -1.38
CD44-218ENST00000525469 SCNN1DP51172 638 aa6.4□□□□□ -1.38
CD44-218ENST00000525469 SMTNP53814 917 aa6.4□□□□□ -1.38
CD44-218ENST00000525469 EFHC2Q5JST6 749 aa6.4□□□□□ -1.38
CD44-218ENST00000525469 BICDL1Q6ZP65 573 aa6.4□□□□□ -1.38
CD44-218ENST00000525469 MTERF4Q7Z6M4 381 aaKnown RBP6.4□□□□□ -1.38
CD44-218ENST00000525469 CLUAP1Q96AJ1 413 aa6.4□□□□□ -1.38
CD44-218ENST00000525469 A0A1W2PP64 1363 aa6.4□□□□□ -1.39
CD44-218ENST00000525469 ROCK2O75116 1388 aaKnown RBP6.4□□□□□ -1.39
CD44-218ENST00000525469 INSRP06213 1382 aa6.4□□□□□ -1.39
CD44-218ENST00000525469 KDRP35968 1356 aa6.4□□□□□ -1.39
CD44-218ENST00000525469 NRXN2Q9P2S2 1712 aa6.39□□□□□ -1.39
CD44-218ENST00000525469 SLX4Q8IY92 1834 aa6.39□□□□□ -1.39
CD44-218ENST00000525469 USP17L3A6NCW0 530 aa6.39□□□□□ -1.39
CD44-218ENST00000525469 USP17L4A6NCW7 530 aa6.39□□□□□ -1.39
CD44-218ENST00000525469 ERVV-2B6SEH9 535 aa6.39□□□□□ -1.39
CD44-218ENST00000525469 HSP90AB1P08238 724 aaKnown RBP6.39□□□□□ -1.39
CD44-218ENST00000525469 PHKG2P15735 406 aa6.39□□□□□ -1.39
CD44-218ENST00000525469 LMOD1P29536 600 aaPredicted RBP6.39□□□□□ -1.39
CD44-218ENST00000525469 PHKA2P46019 1235 aa6.39□□□□□ -1.39
CD44-218ENST00000525469 CABP4P57796 275 aa6.39□□□□□ -1.39
CD44-218ENST00000525469 MAP3K10Q02779 954 aa6.39□□□□□ -1.39
CD44-218ENST00000525469 SRSF11Q05519 484 aaKnown RBP6.39□□□□□ -1.39
CD44-218ENST00000525469 CALD1Q05682 793 aaKnown RBP6.39□□□□□ -1.39
CD44-218ENST00000525469 NFIXQ14938 502 aa6.39□□□□□ -1.39
CD44-218ENST00000525469 C4orf17Q53FE4 359 aa6.39□□□□□ -1.39
CD44-218ENST00000525469 HSP90AB2PQ58FF8 381 aa6.39□□□□□ -1.39
CD44-218ENST00000525469 USP17L2Q6R6M4 530 aa6.39□□□□□ -1.39
CD44-218ENST00000525469 USP17L1Q7RTZ2 530 aa6.39□□□□□ -1.39
CD44-218ENST00000525469 GPR161Q8N6U8 529 aaKnown RBP6.39□□□□□ -1.39
CD44-218ENST00000525469 GLMNQ92990 594 aa6.39□□□□□ -1.39
CD44-218ENST00000525469 SLC4A9Q96Q91 983 aa6.39□□□□□ -1.39
CD44-218ENST00000525469 GPAMQ9HCL2 828 aa6.39□□□□□ -1.39
CD44-218ENST00000525469 MBIPQ9NS73 344 aa6.39□□□□□ -1.39
CD44-218ENST00000525469 FLT4P35916 1363 aa6.39□□□□□ -1.39
CD44-218ENST00000525469 ADAMTSL1Q8N6G6 1762 aa6.39□□□□□ -1.39
CD44-218ENST00000525469 A6NJY4 79 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms