RNA–Protein interactions for RNA: ENST00000524556.1

CSTF3-204, Transcript of cleavage stimulation factor subunit 3, humanhuman

TSL 3

Gene CSTF3, Length 558 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSTF3-204ENST00000524556 ZNF341Q9BYN7 854 aa18.52■□□□□ 0.56
CSTF3-204ENST00000524556 AK9Q5TCS8 1911 aa18.52■□□□□ 0.56
CSTF3-204ENST00000524556 RPAP1Q9BWH6 1393 aaPredicted RBP18.52■□□□□ 0.55
CSTF3-204ENST00000524556 MIGA2Q7L4E1 593 aa18.51■□□□□ 0.55
CSTF3-204ENST00000524556 ANKRD44Q8N8A2 993 aa18.51■□□□□ 0.55
CSTF3-204ENST00000524556 MYH13Q9UKX3 1938 aa18.51■□□□□ 0.55
CSTF3-204ENST00000524556 CTGFP29279 349 aa18.5■□□□□ 0.55
CSTF3-204ENST00000524556 PSMC4P43686 418 aa18.5■□□□□ 0.55
CSTF3-204ENST00000524556 ANKRD23Q86SG2 305 aa18.5■□□□□ 0.55
CSTF3-204ENST00000524556 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.5■□□□□ 0.55
CSTF3-204ENST00000524556 TRIM47Q96LD4 638 aa18.5■□□□□ 0.55
CSTF3-204ENST00000524556 SRRDQ9UH36 339 aa18.5■□□□□ 0.55
CSTF3-204ENST00000524556 CPA4Q9UI42 421 aa18.5■□□□□ 0.55
CSTF3-204ENST00000524556 RANBP2P49792 3224 aaKnown RBP18.5■□□□□ 0.55
CSTF3-204ENST00000524556 KIF16BQ96L93 1317 aa18.49■□□□□ 0.55
CSTF3-204ENST00000524556 PDHXO00330 501 aa18.49■□□□□ 0.55
CSTF3-204ENST00000524556 ECM2O94769 699 aaPredicted RBP18.49■□□□□ 0.55
CSTF3-204ENST00000524556 FGFR2P21802 821 aa18.49■□□□□ 0.55
CSTF3-204ENST00000524556 HOXD10P28358 340 aa18.49■□□□□ 0.55
CSTF3-204ENST00000524556 INPP5BP32019 993 aa18.49■□□□□ 0.55
CSTF3-204ENST00000524556 MTFR1Q15390 333 aa18.49■□□□□ 0.55
CSTF3-204ENST00000524556 KLHDC4Q8TBB5 520 aa18.49■□□□□ 0.55
CSTF3-204ENST00000524556 FAM151AQ8WW52 585 aa18.49■□□□□ 0.55
CSTF3-204ENST00000524556 SHISA4Q96DD7 197 aa18.49■□□□□ 0.55
CSTF3-204ENST00000524556 ZNF112Q9UJU3 913 aa18.49■□□□□ 0.55
CSTF3-204ENST00000524556 KCNH4Q9UQ05 1017 aa18.49■□□□□ 0.55
CSTF3-204ENST00000524556 OSBPP22059 807 aa18.48■□□□□ 0.55
CSTF3-204ENST00000524556 ADGRA2Q96PE1 1338 aa18.48■□□□□ 0.55
CSTF3-204ENST00000524556 FMNL1O95466 1100 aaPredicted RBP18.47■□□□□ 0.55
CSTF3-204ENST00000524556 IFIT1P09914 478 aaKnown RBP18.47■□□□□ 0.55
CSTF3-204ENST00000524556 MOGSQ13724 837 aa18.47■□□□□ 0.55
CSTF3-204ENST00000524556 PUM3Q15397 648 aaKnown RBP18.47■□□□□ 0.55
CSTF3-204ENST00000524556 RAET1EQ8TD07 263 aa18.47■□□□□ 0.55
CSTF3-204ENST00000524556 DPF3Q92784 378 aa18.47■□□□□ 0.55
CSTF3-204ENST00000524556 MGAMO43451 1857 aa18.47■□□□□ 0.55
CSTF3-204ENST00000524556 GRK4P32298 578 aa18.46■□□□□ 0.55
CSTF3-204ENST00000524556 CHRDL2Q6WN34 429 aa18.46■□□□□ 0.55
CSTF3-204ENST00000524556 NKX2-3Q8TAU0 364 aa18.46■□□□□ 0.55
CSTF3-204ENST00000524556 WDR66Q8TBY9 1149 aa18.46■□□□□ 0.55
CSTF3-204ENST00000524556 GJA8P48165 433 aa18.45■□□□□ 0.54
CSTF3-204ENST00000524556 TCP10Q12799 353 aa18.45■□□□□ 0.54
CSTF3-204ENST00000524556 NOL9Q5SY16 702 aaKnown RBP18.45■□□□□ 0.54
CSTF3-204ENST00000524556 CDC42EP5Q6NZY7 148 aa18.45■□□□□ 0.54
CSTF3-204ENST00000524556 DAGLAQ9Y4D2 1042 aa18.45■□□□□ 0.54
CSTF3-204ENST00000524556 MYPNQ86TC9 1320 aa18.45■□□□□ 0.54
CSTF3-204ENST00000524556 GJB1P08034 283 aa18.44■□□□□ 0.54
CSTF3-204ENST00000524556 CCL5P13501 91 aa18.44■□□□□ 0.54
CSTF3-204ENST00000524556 UBE2Q1Q7Z7E8 422 aa18.44■□□□□ 0.54
CSTF3-204ENST00000524556 MRPL50Q8N5N7 158 aaKnown RBP18.44■□□□□ 0.54
CSTF3-204ENST00000524556 LPIN2Q92539 896 aa18.44■□□□□ 0.54
CSTF3-204ENST00000524556 EYA2O00167 538 aa18.43■□□□□ 0.54
CSTF3-204ENST00000524556 SLC5A1P13866 664 aa18.43■□□□□ 0.54
CSTF3-204ENST00000524556 NFIAQ12857 509 aa18.43■□□□□ 0.54
CSTF3-204ENST00000524556 DIXDC1Q155Q3 683 aa18.43■□□□□ 0.54
CSTF3-204ENST00000524556 GPAT2Q6NUI2 795 aa18.43■□□□□ 0.54
CSTF3-204ENST00000524556 USP44Q9H0E7 712 aa18.43■□□□□ 0.54
CSTF3-204ENST00000524556 RBM27Q9P2N5 1060 aaKnown RBP18.43■□□□□ 0.54
CSTF3-204ENST00000524556 CXCL11O14625 94 aa18.42■□□□□ 0.54
CSTF3-204ENST00000524556 BCRP11274 1271 aa18.42■□□□□ 0.54
CSTF3-204ENST00000524556 RFX5P48382 616 aaPredicted RBP18.42■□□□□ 0.54
CSTF3-204ENST00000524556 PARK7Q99497 189 aaKnown RBP18.42■□□□□ 0.54
CSTF3-204ENST00000524556 HTATIP2Q9BUP3 242 aa18.42■□□□□ 0.54
CSTF3-204ENST00000524556 RNF208Q9H0X6 261 aa18.42■□□□□ 0.54
CSTF3-204ENST00000524556 BIN2Q9UBW5 565 aaPredicted RBP18.42■□□□□ 0.54
CSTF3-204ENST00000524556 FAM198AQ9UFP1 575 aa18.42■□□□□ 0.54
CSTF3-204ENST00000524556 PTPRCP08575 1304 aa18.42■□□□□ 0.54
CSTF3-204ENST00000524556 ZEB1P37275 1124 aaPredicted RBP18.41■□□□□ 0.54
CSTF3-204ENST00000524556 FCGRTP55899 365 aa18.41■□□□□ 0.54
CSTF3-204ENST00000524556 UBXN2AP68543 259 aa18.41■□□□□ 0.54
CSTF3-204ENST00000524556 PRKCZQ05513 592 aa18.41■□□□□ 0.54
CSTF3-204ENST00000524556 USP40Q9NVE5 1235 aa18.41■□□□□ 0.54
CSTF3-204ENST00000524556 PHF20L1A8MW92 1017 aa18.4■□□□□ 0.54
CSTF3-204ENST00000524556 CYP2C8P10632 490 aa18.4■□□□□ 0.54
CSTF3-204ENST00000524556 PRDX5P30044 214 aa18.4■□□□□ 0.54
CSTF3-204ENST00000524556 ATG9AQ7Z3C6 839 aa18.4■□□□□ 0.54
CSTF3-204ENST00000524556 ZFPM1Q8IX07 1006 aa18.4■□□□□ 0.54
CSTF3-204ENST00000524556 SLAIN1Q8ND83 568 aa18.4■□□□□ 0.54
CSTF3-204ENST00000524556 MYH2Q9UKX2 1941 aa18.39■□□□□ 0.53
CSTF3-204ENST00000524556 ANP32CO43423 234 aa18.39■□□□□ 0.53
CSTF3-204ENST00000524556 LDHBP07195 334 aaKnown RBP18.39■□□□□ 0.53
CSTF3-204ENST00000524556 PRO3102Q9H379 93 aa18.39■□□□□ 0.53
CSTF3-204ENST00000524556 GABRQQ9UN88 632 aa18.39■□□□□ 0.53
CSTF3-204ENST00000524556 DOCK2Q92608 1830 aa18.39■□□□□ 0.53
CSTF3-204ENST00000524556 A0A0G2JLL6 359 aaPredicted RBP18.38■□□□□ 0.53
CSTF3-204ENST00000524556 FASTKD5Q7L8L6 764 aaKnown RBP18.38■□□□□ 0.53
CSTF3-204ENST00000524556 PRRT2Q7Z6L0 340 aaPredicted RBP18.38■□□□□ 0.53
CSTF3-204ENST00000524556 SCYL3Q8IZE3 742 aa18.38■□□□□ 0.53
CSTF3-204ENST00000524556 U2AF1L4Q8WU68 220 aaKnown RBP18.38■□□□□ 0.53
CSTF3-204ENST00000524556 UNC93B1Q9H1C4 597 aa18.38■□□□□ 0.53
CSTF3-204ENST00000524556 GNL3LQ9NVN8 582 aaKnown RBP18.38■□□□□ 0.53
CSTF3-204ENST00000524556 NR2E3Q9Y5X4 410 aa18.38■□□□□ 0.53
CSTF3-204ENST00000524556 SALL1Q9NSC2 1324 aa18.38■□□□□ 0.53
CSTF3-204ENST00000524556 ATRNL1Q5VV63 1379 aa18.38■□□□□ 0.53
CSTF3-204ENST00000524556 PTPRFP10586 1907 aa18.37■□□□□ 0.53
CSTF3-204ENST00000524556 DOCK3Q8IZD9 2030 aa18.37■□□□□ 0.53
CSTF3-204ENST00000524556 FARP2O94887 1054 aaPredicted RBP18.37■□□□□ 0.53
CSTF3-204ENST00000524556 SGPL1O95470 568 aa18.37■□□□□ 0.53
CSTF3-204ENST00000524556 FAM9BQ8IZU0 186 aa18.37■□□□□ 0.53
CSTF3-204ENST00000524556 PICK1Q9NRD5 415 aa18.37■□□□□ 0.53
CSTF3-204ENST00000524556 AFG3L2Q9Y4W6 797 aa18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms