RNA–Protein interactions for RNA: ENST00000516665.1

RNU6-539P-201, Transcript of RNA, U6 small nuclear 539, pseudogene, humanhuman

BASIC

Gene RNU6-539P, Length 103 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-539P-201ENST00000516665 MMP20O60882 483 aa1.57□□□□□ -2.16
RNU6-539P-201ENST00000516665 LEFTY1O75610 366 aa1.57□□□□□ -2.16
RNU6-539P-201ENST00000516665 EPHB3P54753 998 aa1.57□□□□□ -2.16
RNU6-539P-201ENST00000516665 EPHA4P54764 986 aa1.57□□□□□ -2.16
RNU6-539P-201ENST00000516665 INHBCP55103 352 aa1.57□□□□□ -2.16
RNU6-539P-201ENST00000516665 GRM7Q14831 915 aa1.57□□□□□ -2.16
RNU6-539P-201ENST00000516665 SAMD11Q96NU1 681 aa1.57□□□□□ -2.16
RNU6-539P-201ENST00000516665 TRIM34Q9BYJ4 488 aa1.57□□□□□ -2.16
RNU6-539P-201ENST00000516665 OSGEPQ9NPF4 335 aa1.57□□□□□ -2.16
RNU6-539P-201ENST00000516665 DMGDHQ9UI17 866 aaKnown RBP1.57□□□□□ -2.16
RNU6-539P-201ENST00000516665 TSC22D4Q9Y3Q8 395 aa1.57□□□□□ -2.16
RNU6-539P-201ENST00000516665 AP1G2O75843 785 aa1.56□□□□□ -2.16
RNU6-539P-201ENST00000516665 RAC2P15153 192 aa1.56□□□□□ -2.16
RNU6-539P-201ENST00000516665 EPB42P16452 691 aa1.56□□□□□ -2.16
RNU6-539P-201ENST00000516665 CNR2P34972 360 aa1.56□□□□□ -2.16
RNU6-539P-201ENST00000516665 TRHRP34981 398 aaPredicted RBP1.56□□□□□ -2.16
RNU6-539P-201ENST00000516665 IRF2BP1Q8IU81 584 aa1.56□□□□□ -2.16
RNU6-539P-201ENST00000516665 SPRYD3Q8NCJ5 442 aa1.56□□□□□ -2.16
RNU6-539P-201ENST00000516665 MYLIPQ8WY64 445 aa1.56□□□□□ -2.16
RNU6-539P-201ENST00000516665 WNT8BQ93098 351 aa1.56□□□□□ -2.16
RNU6-539P-201ENST00000516665 NELL2Q99435 816 aa1.56□□□□□ -2.16
RNU6-539P-201ENST00000516665 USP40Q9NVE5 1235 aa1.56□□□□□ -2.16
RNU6-539P-201ENST00000516665 CEP126Q9P2H0 1117 aa1.56□□□□□ -2.16
RNU6-539P-201ENST00000516665 ST6GALNAC2Q9UJ37 374 aa1.56□□□□□ -2.16
RNU6-539P-201ENST00000516665 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP1.55□□□□□ -2.16
RNU6-539P-201ENST00000516665 SMNDC1O75940 238 aaKnown RBP eCLIP1.55□□□□□ -2.16
RNU6-539P-201ENST00000516665 SLURP1P55000 103 aa1.55□□□□□ -2.16
RNU6-539P-201ENST00000516665 KRTAP10-5P60370 271 aa1.55□□□□□ -2.16
RNU6-539P-201ENST00000516665 COL13A1Q5TAT6 717 aaPredicted RBP1.55□□□□□ -2.16
RNU6-539P-201ENST00000516665 IER5Q5VY09 327 aa1.55□□□□□ -2.16
RNU6-539P-201ENST00000516665 DYMQ7RTS9 669 aa1.55□□□□□ -2.16
RNU6-539P-201ENST00000516665 SPACA3Q8IXA5 215 aa1.55□□□□□ -2.16
RNU6-539P-201ENST00000516665 CHST13Q8NET6 341 aa1.55□□□□□ -2.16
RNU6-539P-201ENST00000516665 KISS1RQ969F8 398 aaPredicted RBP1.55□□□□□ -2.16
RNU6-539P-201ENST00000516665 RASSF4Q9H2L5 321 aa1.55□□□□□ -2.16
RNU6-539P-201ENST00000516665 BCS1LQ9Y276 419 aa1.55□□□□□ -2.16
RNU6-539P-201ENST00000516665 USP17L8P0C7I0 530 aa1.54□□□□□ -2.16
RNU6-539P-201ENST00000516665 INPP5BP32019 993 aa1.54□□□□□ -2.16
RNU6-539P-201ENST00000516665 SOX18P35713 384 aa1.54□□□□□ -2.16
RNU6-539P-201ENST00000516665 HIRAP54198 1017 aaPredicted RBP1.54□□□□□ -2.16
RNU6-539P-201ENST00000516665 MRPS21P82921 87 aaKnown RBP1.54□□□□□ -2.16
RNU6-539P-201ENST00000516665 NR1H3Q13133 447 aa1.54□□□□□ -2.16
RNU6-539P-201ENST00000516665 AMHR2Q16671 573 aa1.54□□□□□ -2.16
RNU6-539P-201ENST00000516665 EXOSC6Q5RKV6 272 aaKnown RBP1.54□□□□□ -2.16
RNU6-539P-201ENST00000516665 NT5DC1Q5TFE4 455 aa1.54□□□□□ -2.16
RNU6-539P-201ENST00000516665 CNKSR3Q6P9H4 555 aa1.54□□□□□ -2.16
RNU6-539P-201ENST00000516665 TTC6Q86TZ1 520 aa1.54□□□□□ -2.16
RNU6-539P-201ENST00000516665 TMEFF1Q8IYR6 380 aa1.54□□□□□ -2.16
RNU6-539P-201ENST00000516665 USP33Q8TEY7 942 aa1.54□□□□□ -2.16
RNU6-539P-201ENST00000516665 DDX1Q92499 740 aaKnown RBP1.54□□□□□ -2.16
RNU6-539P-201ENST00000516665 ZNF552Q9H707 407 aaPredicted RBP1.54□□□□□ -2.16
RNU6-539P-201ENST00000516665 MBD1Q9UIS9 605 aaPredicted RBP1.54□□□□□ -2.16
RNU6-539P-201ENST00000516665 A0A087X1B8 175 aa1.53□□□□□ -2.16
RNU6-539P-201ENST00000516665 NPIPB8E9PQR5 432 aa1.53□□□□□ -2.16
RNU6-539P-201ENST00000516665 INO80B-WBP1J3KQ70 363 aa1.53□□□□□ -2.16
RNU6-539P-201ENST00000516665 PTPRAP18433 802 aa1.53□□□□□ -2.16
RNU6-539P-201ENST00000516665 FBLP22087 321 aaKnown RBP1.53□□□□□ -2.16
RNU6-539P-201ENST00000516665 DPTQ07507 201 aa1.53□□□□□ -2.16
RNU6-539P-201ENST00000516665 IGFL4Q6B9Z1 124 aa1.53□□□□□ -2.16
RNU6-539P-201ENST00000516665 FAM129CQ86XR2 697 aa1.53□□□□□ -2.16
RNU6-539P-201ENST00000516665 TNS4Q8IZW8 715 aa1.53□□□□□ -2.16
RNU6-539P-201ENST00000516665 ZNF592Q92610 1267 aa1.53□□□□□ -2.16
RNU6-539P-201ENST00000516665 SIRT1Q96EB6 747 aa1.53□□□□□ -2.16
RNU6-539P-201ENST00000516665 INO80BQ9C086 356 aaPredicted RBP1.53□□□□□ -2.16
RNU6-539P-201ENST00000516665 POLR3EQ9NVU0 708 aa1.53□□□□□ -2.16
RNU6-539P-201ENST00000516665 TGFBR3LH3BV60 316 aa1.52□□□□□ -2.17
RNU6-539P-201ENST00000516665 FFAR3O14843 346 aa1.52□□□□□ -2.17
RNU6-539P-201ENST00000516665 BACH1O14867 736 aa1.52□□□□□ -2.17
RNU6-539P-201ENST00000516665 IKBKBO14920 756 aa1.52□□□□□ -2.17
RNU6-539P-201ENST00000516665 IDH3AP50213 366 aa1.52□□□□□ -2.17
RNU6-539P-201ENST00000516665 PSMA6P60900 246 aaKnown RBP1.52□□□□□ -2.17
RNU6-539P-201ENST00000516665 C19orf57Q0VDD7 668 aa1.52□□□□□ -2.17
RNU6-539P-201ENST00000516665 POTEAQ6S8J7 498 aa1.52□□□□□ -2.17
RNU6-539P-201ENST00000516665 ALDH16A1Q8IZ83 802 aa1.52□□□□□ -2.17
RNU6-539P-201ENST00000516665 SERBP1Q8NC51 408 aaKnown RBP eCLIP1.52□□□□□ -2.17
RNU6-539P-201ENST00000516665 ALPK1Q96QP1 1244 aa1.52□□□□□ -2.17
RNU6-539P-201ENST00000516665 ZNF341Q9BYN7 854 aa1.52□□□□□ -2.17
RNU6-539P-201ENST00000516665 SLC6A17Q9H1V8 727 aa1.52□□□□□ -2.17
RNU6-539P-201ENST00000516665 ZNF358Q9NW07 568 aa1.52□□□□□ -2.17
RNU6-539P-201ENST00000516665 ZFR2Q9UPR6 939 aaKnown RBP1.52□□□□□ -2.17
RNU6-539P-201ENST00000516665 USP20Q9Y2K6 914 aa1.52□□□□□ -2.17
RNU6-539P-201ENST00000516665 IRS4O14654 1257 aaPredicted RBP1.51□□□□□ -2.17
RNU6-539P-201ENST00000516665 HPXP02790 462 aa1.51□□□□□ -2.17
RNU6-539P-201ENST00000516665 ASPAP45381 313 aa1.51□□□□□ -2.17
RNU6-539P-201ENST00000516665 KRTAP10-12P60413 245 aa1.51□□□□□ -2.17
RNU6-539P-201ENST00000516665 NKPD1Q17RQ9 610 aa1.51□□□□□ -2.17
RNU6-539P-201ENST00000516665 PARP9Q8IXQ6 854 aa1.51□□□□□ -2.17
RNU6-539P-201ENST00000516665 PHTF2Q8N3S3 785 aa1.51□□□□□ -2.17
RNU6-539P-201ENST00000516665 HEXIM2Q96MH2 286 aaKnown RBP1.51□□□□□ -2.17
RNU6-539P-201ENST00000516665 PWWP2AQ96N64 755 aa1.51□□□□□ -2.17
RNU6-539P-201ENST00000516665 ATP13A1Q9HD20 1204 aa1.51□□□□□ -2.17
RNU6-539P-201ENST00000516665 SLAMF8Q9P0V8 285 aa1.51□□□□□ -2.17
RNU6-539P-201ENST00000516665 DNAJC25-GNG10A0A024R161 153 aa1.5□□□□□ -2.17
RNU6-539P-201ENST00000516665 FAM177BA6PVY3 158 aa1.5□□□□□ -2.17
RNU6-539P-201ENST00000516665 ERVV-2B6SEH9 535 aa1.5□□□□□ -2.17
RNU6-539P-201ENST00000516665 N4BP3O15049 544 aa1.5□□□□□ -2.17
RNU6-539P-201ENST00000516665 LTKP29376 864 aa1.5□□□□□ -2.17
RNU6-539P-201ENST00000516665 HK2P52789 917 aa1.5□□□□□ -2.17
RNU6-539P-201ENST00000516665 CABP4P57796 275 aa1.5□□□□□ -2.17
RNU6-539P-201ENST00000516665 ZC3H6P61129 1189 aaKnown RBP1.5□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms