RNA–Protein interactions for RNA: ENST00000514271.2

CLIP1-205, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 3,493 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-205ENST00000514271 CACNA1SQ13698 1873 aa8.71□□□□□ -1.02
CLIP1-205ENST00000514271 UBTFL1P0CB47 393 aaPredicted RBP8.71□□□□□ -1.02
CLIP1-205ENST00000514271 GPTP24298 496 aa8.71□□□□□ -1.02
CLIP1-205ENST00000514271 PIP4K2AP48426 406 aaPredicted RBP8.71□□□□□ -1.02
CLIP1-205ENST00000514271 PTH1RQ03431 593 aa8.71□□□□□ -1.02
CLIP1-205ENST00000514271 SYAP1Q96A49 352 aaPredicted RBP8.71□□□□□ -1.02
CLIP1-205ENST00000514271 NRBP1Q9UHY1 535 aa8.71□□□□□ -1.02
CLIP1-205ENST00000514271 ANKRD18BA2A2Z9 1011 aa8.7□□□□□ -1.02
CLIP1-205ENST00000514271 FECHP22830 423 aa8.7□□□□□ -1.02
CLIP1-205ENST00000514271 NCAPHQ15003 741 aa8.7□□□□□ -1.02
CLIP1-205ENST00000514271 PDCL2Q8N4E4 241 aa8.7□□□□□ -1.02
CLIP1-205ENST00000514271 EYA3Q99504 573 aa8.7□□□□□ -1.02
CLIP1-205ENST00000514271 PDGFDQ9GZP0 370 aaPredicted RBP8.7□□□□□ -1.02
CLIP1-205ENST00000514271 PSME4Q14997 1843 aa8.7□□□□□ -1.02
CLIP1-205ENST00000514271 GNAI2P04899 355 aa8.7□□□□□ -1.02
CLIP1-205ENST00000514271 PTMAP06454 111 aaKnown RBP8.7□□□□□ -1.02
CLIP1-205ENST00000514271 DPEP1P16444 411 aa8.7□□□□□ -1.02
CLIP1-205ENST00000514271 IGHMBP2P38935 993 aaKnown RBP8.7□□□□□ -1.02
CLIP1-205ENST00000514271 HSP90AB4PQ58FF6 505 aa8.7□□□□□ -1.02
CLIP1-205ENST00000514271 ATP6V0A2Q9Y487 856 aa8.7□□□□□ -1.02
CLIP1-205ENST00000514271 CIAO1O76071 339 aa8.7□□□□□ -1.02
CLIP1-205ENST00000514271 NAA30Q147X3 362 aaPredicted RBP8.7□□□□□ -1.02
CLIP1-205ENST00000514271 E4F1Q66K89 784 aaPredicted RBP8.7□□□□□ -1.02
CLIP1-205ENST00000514271 FBXO38Q6PIJ6 1188 aa8.7□□□□□ -1.02
CLIP1-205ENST00000514271 C15orf52Q6ZUT6 534 aaKnown RBP8.7□□□□□ -1.02
CLIP1-205ENST00000514271 REXO1L1PQ8IX06 675 aa8.7□□□□□ -1.02
CLIP1-205ENST00000514271 LRRN4CLQ8ND94 238 aa8.7□□□□□ -1.02
CLIP1-205ENST00000514271 RTFDC1Q9BY42 306 aaPredicted RBP8.7□□□□□ -1.02
CLIP1-205ENST00000514271 CGNQ9P2M7 1197 aaKnown RBP8.7□□□□□ -1.02
CLIP1-205ENST00000514271 PPEF1O14829 653 aaPredicted RBP8.69□□□□□ -1.02
CLIP1-205ENST00000514271 HMMRO75330 724 aa8.69□□□□□ -1.02
CLIP1-205ENST00000514271 CAVIN2O95810 425 aa8.69□□□□□ -1.02
CLIP1-205ENST00000514271 TYRO3Q06418 890 aa8.69□□□□□ -1.02
CLIP1-205ENST00000514271 ANKRD18AQ8IVF6 992 aa8.69□□□□□ -1.02
CLIP1-205ENST00000514271 GDPD2Q9HCC8 539 aa8.69□□□□□ -1.02
CLIP1-205ENST00000514271 SH2B1Q9NRF2 756 aaPredicted RBP8.69□□□□□ -1.02
CLIP1-205ENST00000514271 TAF6LQ9Y6J9 622 aa8.69□□□□□ -1.02
CLIP1-205ENST00000514271 ATP5J2-PTCD1G3V325 749 aa8.69□□□□□ -1.02
CLIP1-205ENST00000514271 PTGS1P23219 599 aa8.69□□□□□ -1.02
CLIP1-205ENST00000514271 BSDC1Q9NW68 430 aaPredicted RBP8.69□□□□□ -1.02
CLIP1-205ENST00000514271 SNED1Q8TER0 1413 aa8.69□□□□□ -1.02
CLIP1-205ENST00000514271 MROH5Q6ZUA9 1318 aa8.69□□□□□ -1.02
CLIP1-205ENST00000514271 CTDNEP1O95476 244 aa8.68□□□□□ -1.02
CLIP1-205ENST00000514271 KCNA3P22001 575 aa8.68□□□□□ -1.02
CLIP1-205ENST00000514271 ATP2B4P23634 1241 aa8.68□□□□□ -1.02
CLIP1-205ENST00000514271 LRMPQ12912 555 aa8.68□□□□□ -1.02
CLIP1-205ENST00000514271 IFIT5Q13325 482 aaKnown RBP8.68□□□□□ -1.02
CLIP1-205ENST00000514271 SLC4A10Q6U841 1118 aa8.68□□□□□ -1.02
CLIP1-205ENST00000514271 TTLL11Q8NHH1 800 aa8.68□□□□□ -1.02
CLIP1-205ENST00000514271 LEMD3Q9Y2U8 911 aa8.68□□□□□ -1.02
CLIP1-205ENST00000514271 SLX4Q8IY92 1834 aa8.68□□□□□ -1.02
CLIP1-205ENST00000514271 CBX1P83916 185 aa8.68□□□□□ -1.02
CLIP1-205ENST00000514271 FKBP4Q02790 459 aaKnown RBP eCLIP8.68□□□□□ -1.02
CLIP1-205ENST00000514271 DNM1Q05193 864 aaKnown RBP8.68□□□□□ -1.02
CLIP1-205ENST00000514271 CCDC57Q2TAC2 916 aa8.68□□□□□ -1.02
CLIP1-205ENST00000514271 RSRC2Q7L4I2 434 aaKnown RBP8.68□□□□□ -1.02
CLIP1-205ENST00000514271 CCDC82Q8N4S0 544 aa8.68□□□□□ -1.02
CLIP1-205ENST00000514271 PSD3Q9NYI0 1048 aa8.68□□□□□ -1.02
CLIP1-205ENST00000514271 DDX60LQ5H9U9 1706 aaKnown RBP8.68□□□□□ -1.02
CLIP1-205ENST00000514271 MYH6P13533 1939 aa8.68□□□□□ -1.02
CLIP1-205ENST00000514271 SBF1O95248 1867 aa8.68□□□□□ -1.02
CLIP1-205ENST00000514271 FAM177BA6PVY3 158 aa8.68□□□□□ -1.02
CLIP1-205ENST00000514271 TBX2Q13207 712 aaPredicted RBP8.68□□□□□ -1.02
CLIP1-205ENST00000514271 GIMAP6Q6P9H5 292 aa8.68□□□□□ -1.02
CLIP1-205ENST00000514271 CDC37L1Q7L3B6 337 aa8.68□□□□□ -1.02
CLIP1-205ENST00000514271 UBE3BQ7Z3V4 1068 aa8.68□□□□□ -1.02
CLIP1-205ENST00000514271 DIAPH3Q9NSV4 1193 aa8.68□□□□□ -1.02
CLIP1-205ENST00000514271 LOC102724159A0A0B4J2E5 919 aa8.67□□□□□ -1.02
CLIP1-205ENST00000514271 RPS8P62241 208 aaKnown RBP8.67□□□□□ -1.02
CLIP1-205ENST00000514271 FOXO4P98177 505 aa8.67□□□□□ -1.02
CLIP1-205ENST00000514271 PWP2Q15269 919 aaKnown RBP8.67□□□□□ -1.02
CLIP1-205ENST00000514271 ERC1Q8IUD2 1116 aa8.67□□□□□ -1.02
CLIP1-205ENST00000514271 CCAR2Q8N163 923 aaKnown RBP8.67□□□□□ -1.02
CLIP1-205ENST00000514271 RNF214Q8ND24 703 aa8.67□□□□□ -1.02
CLIP1-205ENST00000514271 GOLPH3LQ9H4A5 285 aa8.67□□□□□ -1.02
CLIP1-205ENST00000514271 RCOR1Q9UKL0 485 aa8.67□□□□□ -1.02
CLIP1-205ENST00000514271 PATL2C9JE40 543 aaKnown RBP8.67□□□□□ -1.02
CLIP1-205ENST00000514271 MAP2K7O14733 419 aa8.67□□□□□ -1.02
CLIP1-205ENST00000514271 FOXP2O15409 715 aa8.67□□□□□ -1.02
CLIP1-205ENST00000514271 NOP2P46087 812 aaKnown RBP8.67□□□□□ -1.02
CLIP1-205ENST00000514271 CWF19L2Q2TBE0 894 aaKnown RBP8.67□□□□□ -1.02
CLIP1-205ENST00000514271 TSHZ3Q63HK5 1081 aa8.67□□□□□ -1.02
CLIP1-205ENST00000514271 PRPF40BQ6NWY9 871 aaKnown RBP8.67□□□□□ -1.02
CLIP1-205ENST00000514271 ELOA2Q8IYF1 753 aaPredicted RBP8.67□□□□□ -1.02
CLIP1-205ENST00000514271 ZNF397Q8NF99 534 aaPredicted RBP8.67□□□□□ -1.02
CLIP1-205ENST00000514271 LEO1Q8WVC0 666 aaPredicted RBP8.67□□□□□ -1.02
CLIP1-205ENST00000514271 C7orf43Q8WVR3 580 aa8.67□□□□□ -1.02
CLIP1-205ENST00000514271 ZNF622Q969S3 477 aaKnown RBP eCLIP8.67□□□□□ -1.022e-6■■■□□ 15.3
CLIP1-205ENST00000514271 ZSCAN21Q9Y5A6 473 aaPredicted RBP8.67□□□□□ -1.02
CLIP1-205ENST00000514271 XDHP47989 1333 aa8.67□□□□□ -1.02
CLIP1-205ENST00000514271 F6X3S4 739 aa8.67□□□□□ -1.02
CLIP1-205ENST00000514271 ATP8B1O43520 1251 aa8.67□□□□□ -1.02
CLIP1-205ENST00000514271 FAM89AQ96GI7 184 aa8.67□□□□□ -1.02
CLIP1-205ENST00000514271 COPRSQ9NQ92 184 aa8.67□□□□□ -1.02
CLIP1-205ENST00000514271 ZSCAN31Q96LW9 406 aaPredicted RBP8.66□□□□□ -1.02
CLIP1-205ENST00000514271 GPR108Q9NPR9 543 aa8.66□□□□□ -1.02
CLIP1-205ENST00000514271 NUTM1Q86Y26 1132 aa8.66□□□□□ -1.02
CLIP1-205ENST00000514271 KIFC2Q96AC6 838 aa8.66□□□□□ -1.02
CLIP1-205ENST00000514271 ERO1AQ96HE7 468 aa8.66□□□□□ -1.02
CLIP1-205ENST00000514271 SGSM3Q96HU1 749 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms