RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 ZNF157P51786 506 aaPredicted RBP11.92□□□□□ -0.5
RNF4-221ENST00000513643 CACNB3P54284 484 aa11.92□□□□□ -0.5
RNF4-221ENST00000513643 RHBDL3P58872 404 aa11.92□□□□□ -0.5
RNF4-221ENST00000513643 NFIAQ12857 509 aa11.92□□□□□ -0.5
RNF4-221ENST00000513643 GORABQ5T7V8 394 aa11.92□□□□□ -0.5
RNF4-221ENST00000513643 RASAL3Q86YV0 1011 aa11.92□□□□□ -0.5
RNF4-221ENST00000513643 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.92□□□□□ -0.5
RNF4-221ENST00000513643 FAM151AQ8WW52 585 aa11.92□□□□□ -0.5
RNF4-221ENST00000513643 FAM198AQ9UFP1 575 aa11.92□□□□□ -0.5
RNF4-221ENST00000513643 ABCF2Q9UG63 623 aa11.92□□□□□ -0.5
RNF4-221ENST00000513643 FOXN1O15353 648 aa11.91□□□□□ -0.5
RNF4-221ENST00000513643 WDHD1O75717 1129 aaPredicted RBP11.91□□□□□ -0.5
RNF4-221ENST00000513643 MAP4K4O95819 1239 aaPredicted RBP11.91□□□□□ -0.5
RNF4-221ENST00000513643 ZAP70P43403 619 aa11.91□□□□□ -0.5
RNF4-221ENST00000513643 TNNI2P48788 182 aa11.91□□□□□ -0.5
RNF4-221ENST00000513643 MAP3K10Q02779 954 aa11.91□□□□□ -0.5
RNF4-221ENST00000513643 ERICH6Q7L0X2 663 aa11.91□□□□□ -0.5
RNF4-221ENST00000513643 ARMC9Q7Z3E5 817 aa11.91□□□□□ -0.5
RNF4-221ENST00000513643 AACSQ86V21 672 aa11.91□□□□□ -0.5
RNF4-221ENST00000513643 CSRNP1Q96S65 589 aa11.91□□□□□ -0.5
RNF4-221ENST00000513643 IL1RAPL2Q9NP60 686 aa11.91□□□□□ -0.5
RNF4-221ENST00000513643 FZD1Q9UP38 647 aa11.91□□□□□ -0.5
RNF4-221ENST00000513643 MROH7-TTC4A0A0A0MT08 1334 aa11.9□□□□□ -0.5
RNF4-221ENST00000513643 MYH13Q9UKX3 1938 aa11.9□□□□□ -0.5
RNF4-221ENST00000513643 PPP1R12BO60237 982 aaPredicted RBP11.9□□□□□ -0.5
RNF4-221ENST00000513643 ENTPD3O75355 529 aa11.9□□□□□ -0.5
RNF4-221ENST00000513643 PPP4CP60510 307 aa11.9□□□□□ -0.5
RNF4-221ENST00000513643 KIF23Q02241 960 aaPredicted RBP11.9□□□□□ -0.5
RNF4-221ENST00000513643 TTC39AQ5SRH9 613 aa11.9□□□□□ -0.5
RNF4-221ENST00000513643 ZFPM1Q8IX07 1006 aa11.9□□□□□ -0.5
RNF4-221ENST00000513643 SLF2Q8IX21 1173 aa11.9□□□□□ -0.5
RNF4-221ENST00000513643 REM2Q8IYK8 340 aaPredicted RBP11.9□□□□□ -0.5
RNF4-221ENST00000513643 CLASRPQ8N2M8 674 aaKnown RBP11.9□□□□□ -0.5
RNF4-221ENST00000513643 PIH1D3Q9NQM4 214 aaKnown RBP11.9□□□□□ -0.5
RNF4-221ENST00000513643 SNRKQ9NRH2 765 aa11.9□□□□□ -0.5
RNF4-221ENST00000513643 USP40Q9NVE5 1235 aa11.9□□□□□ -0.5
RNF4-221ENST00000513643 ANGEL1Q9UNK9 670 aaKnown RBP11.9□□□□□ -0.5
RNF4-221ENST00000513643 ATRNL1Q5VV63 1379 aa11.9□□□□□ -0.5
RNF4-221ENST00000513643 LDHCP07864 332 aa11.89□□□□□ -0.51
RNF4-221ENST00000513643 BTDP43251 543 aa11.89□□□□□ -0.51
RNF4-221ENST00000513643 TM4SF4P48230 202 aa11.89□□□□□ -0.51
RNF4-221ENST00000513643 SPRYD7Q5W111 196 aa11.89□□□□□ -0.51
RNF4-221ENST00000513643 TMED8Q6PL24 325 aaPredicted RBP11.89□□□□□ -0.51
RNF4-221ENST00000513643 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.89□□□□□ -0.51
RNF4-221ENST00000513643 PAXIP1Q6ZW49 1069 aaPredicted RBP11.89□□□□□ -0.51
RNF4-221ENST00000513643 SH3BP5LQ7L8J4 393 aa11.89□□□□□ -0.51
RNF4-221ENST00000513643 DZIP1Q86YF9 867 aaKnown RBP11.89□□□□□ -0.51
RNF4-221ENST00000513643 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.89□□□□□ -0.51
RNF4-221ENST00000513643 CRBNQ96SW2 442 aa11.89□□□□□ -0.51
RNF4-221ENST00000513643 PRDM10Q9NQV6 1147 aa11.89□□□□□ -0.51
RNF4-221ENST00000513643 ZNF112Q9UJU3 913 aa11.89□□□□□ -0.51
RNF4-221ENST00000513643 CA12O43570 354 aa11.88□□□□□ -0.51
RNF4-221ENST00000513643 HSPA8P11142 646 aaKnown RBP11.88□□□□□ -0.51
RNF4-221ENST00000513643 GSTO1P78417 241 aa11.88□□□□□ -0.51
RNF4-221ENST00000513643 AAMPQ13685 434 aa11.88□□□□□ -0.51
RNF4-221ENST00000513643 ADGRA1Q86SQ6 560 aa11.88□□□□□ -0.51
RNF4-221ENST00000513643 ANKRD13AQ8IZ07 590 aa11.88□□□□□ -0.51
RNF4-221ENST00000513643 CLMNQ96JQ2 1002 aa11.88□□□□□ -0.51
RNF4-221ENST00000513643 ANTXR1Q9H6X2 564 aa11.88□□□□□ -0.51
RNF4-221ENST00000513643 DDX4Q9NQI0 724 aaKnown RBP11.88□□□□□ -0.51
RNF4-221ENST00000513643 TMOD2Q9NZR1 351 aa11.88□□□□□ -0.51
RNF4-221ENST00000513643 TESPA1A2RU30 521 aaPredicted RBP11.87□□□□□ -0.51
RNF4-221ENST00000513643 ZBTB48P10074 688 aaPredicted RBP11.87□□□□□ -0.51
RNF4-221ENST00000513643 ATP5JP18859 108 aa11.87□□□□□ -0.51
RNF4-221ENST00000513643 GJA5P36382 358 aa11.87□□□□□ -0.51
RNF4-221ENST00000513643 IREB2P48200 963 aaKnown RBP11.87□□□□□ -0.51
RNF4-221ENST00000513643 CTCFP49711 727 aaPredicted RBP11.87□□□□□ -0.51
RNF4-221ENST00000513643 RGS3P49796 1198 aa11.87□□□□□ -0.51
RNF4-221ENST00000513643 MAP3K9P80192 1104 aa11.87□□□□□ -0.51
RNF4-221ENST00000513643 GRM1Q13255 1194 aa11.87□□□□□ -0.51
RNF4-221ENST00000513643 HDAC1Q13547 482 aaPredicted RBP11.87□□□□□ -0.51
RNF4-221ENST00000513643 PRKG1Q13976 671 aa11.87□□□□□ -0.51
RNF4-221ENST00000513643 TTLL12Q14166 644 aaPredicted RBP11.87□□□□□ -0.51
RNF4-221ENST00000513643 COL13A1Q5TAT6 717 aaPredicted RBP11.87□□□□□ -0.51
RNF4-221ENST00000513643 LRRCC1Q9C099 1032 aa11.87□□□□□ -0.51
RNF4-221ENST00000513643 SAGE1Q9NXZ1 904 aa11.87□□□□□ -0.51
RNF4-221ENST00000513643 RAI14Q9P0K7 980 aa11.87□□□□□ -0.51
RNF4-221ENST00000513643 LRP2BPQ9P2M1 347 aa11.87□□□□□ -0.51
RNF4-221ENST00000513643 MYH2Q9UKX2 1941 aa11.86□□□□□ -0.51
RNF4-221ENST00000513643 PHF20L1A8MW92 1017 aa11.86□□□□□ -0.51
RNF4-221ENST00000513643 HOOK2Q96ED9 719 aa11.86□□□□□ -0.51
RNF4-221ENST00000513643 SLC10A4Q96EP9 437 aa11.86□□□□□ -0.51
RNF4-221ENST00000513643 CFHR5Q9BXR6 569 aa11.86□□□□□ -0.51
RNF4-221ENST00000513643 RNF186Q9NXI6 227 aa11.86□□□□□ -0.51
RNF4-221ENST00000513643 NDUFB9Q9Y6M9 179 aa11.86□□□□□ -0.51
RNF4-221ENST00000513643 COL2A1P02458 1487 aaPredicted RBP11.85□□□□□ -0.51
RNF4-221ENST00000513643 DDTLA6NHG4 134 aaPredicted RBP11.85□□□□□ -0.51
RNF4-221ENST00000513643 APBB1O00213 710 aa11.85□□□□□ -0.51
RNF4-221ENST00000513643 SMARCA5O60264 1052 aaPredicted RBP11.85□□□□□ -0.51
RNF4-221ENST00000513643 TBC1D12O60347 775 aa11.85□□□□□ -0.51
RNF4-221ENST00000513643 IFIT2P09913 472 aaKnown RBP11.85□□□□□ -0.51
RNF4-221ENST00000513643 TCP10Q12799 353 aa11.85□□□□□ -0.51
RNF4-221ENST00000513643 VGLL4Q14135 290 aa11.85□□□□□ -0.51
RNF4-221ENST00000513643 NAA16Q6N069 864 aaPredicted RBP11.85□□□□□ -0.51
RNF4-221ENST00000513643 METTL16Q86W50 562 aaKnown RBP11.85□□□□□ -0.51
RNF4-221ENST00000513643 WNK4Q96J92 1243 aa11.85□□□□□ -0.51
RNF4-221ENST00000513643 MS4A4AQ96JQ5 239 aa11.85□□□□□ -0.51
RNF4-221ENST00000513643 HAUS7Q99871 368 aa11.85□□□□□ -0.51
RNF4-221ENST00000513643 SNCAIPQ9Y6H5 919 aa11.85□□□□□ -0.51
RNF4-221ENST00000513643 TCRBV5S4A2TA0A5A2 114 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms