RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 NEXMIFQ5QGS0 1516 aa9.57□□□□□ -0.88
LIMCH1-216ENST00000512820 SHTN1A0MZ66 631 aa9.57□□□□□ -0.88
LIMCH1-216ENST00000512820 FGAP02671 866 aa9.57□□□□□ -0.88
LIMCH1-216ENST00000512820 ITGA6P23229 1130 aa9.57□□□□□ -0.88
LIMCH1-216ENST00000512820 ADD1P35611 737 aaKnown RBP9.57□□□□□ -0.88
LIMCH1-216ENST00000512820 DNA2P51530 1060 aa9.57□□□□□ -0.88
LIMCH1-216ENST00000512820 IKQ13123 557 aaPredicted RBP9.57□□□□□ -0.88
LIMCH1-216ENST00000512820 DPCR1Q3MIW9 517 aa9.57□□□□□ -0.88
LIMCH1-216ENST00000512820 LRRC24Q50LG9 513 aa9.57□□□□□ -0.88
LIMCH1-216ENST00000512820 ZMYM1Q5SVZ6 1142 aa9.57□□□□□ -0.88
LIMCH1-216ENST00000512820 DZIP1Q86YF9 867 aaKnown RBP9.57□□□□□ -0.88
LIMCH1-216ENST00000512820 CNGA4Q8IV77 575 aa9.57□□□□□ -0.88
LIMCH1-216ENST00000512820 C19orf44Q9H6X5 657 aa9.57□□□□□ -0.88
LIMCH1-216ENST00000512820 VPS18Q9P253 973 aa9.57□□□□□ -0.88
LIMCH1-216ENST00000512820 PHKG2P15735 406 aa9.56□□□□□ -0.88
LIMCH1-216ENST00000512820 CAPN2P17655 700 aa9.56□□□□□ -0.88
LIMCH1-216ENST00000512820 UTP14CQ5TAP6 766 aaKnown RBP9.56□□□□□ -0.88
LIMCH1-216ENST00000512820 CDC5LQ99459 802 aaKnown RBP9.56□□□□□ -0.88
LIMCH1-216ENST00000512820 SEC63Q9UGP8 760 aaKnown RBP9.56□□□□□ -0.88
LIMCH1-216ENST00000512820 MYO6Q9UM54 1294 aa9.56□□□□□ -0.88
LIMCH1-216ENST00000512820 GUCA1BQ9UMX6 200 aa9.56□□□□□ -0.88
LIMCH1-216ENST00000512820 ABCA9Q8IUA7 1624 aa9.56□□□□□ -0.88
LIMCH1-216ENST00000512820 RDXP35241 583 aaKnown RBP9.56□□□□□ -0.88
LIMCH1-216ENST00000512820 POSTNQ15063 836 aa9.56□□□□□ -0.88
LIMCH1-216ENST00000512820 ZNF444Q8N0Y2 327 aaPredicted RBP9.56□□□□□ -0.88
LIMCH1-216ENST00000512820 KAT14Q9H8E8 782 aa9.56□□□□□ -0.88
LIMCH1-216ENST00000512820 DEXIO95424 95 aa9.56□□□□□ -0.88
LIMCH1-216ENST00000512820 CYLC1P35663 651 aaPredicted RBP9.56□□□□□ -0.88
LIMCH1-216ENST00000512820 TUBB4BP68371 445 aa9.56□□□□□ -0.88
LIMCH1-216ENST00000512820 PDE4BQ07343 736 aa9.56□□□□□ -0.88
LIMCH1-216ENST00000512820 ARID5BQ14865 1188 aa9.56□□□□□ -0.88
LIMCH1-216ENST00000512820 CCDC152Q4G0S7 254 aa9.56□□□□□ -0.88
LIMCH1-216ENST00000512820 TRMT44Q8IYL2 757 aaKnown RBP9.56□□□□□ -0.88
LIMCH1-216ENST00000512820 COL3A1P02461 1466 aaPredicted RBP9.56□□□□□ -0.88
LIMCH1-216ENST00000512820 PSDA5PKW4 1024 aaPredicted RBP9.56□□□□□ -0.88
LIMCH1-216ENST00000512820 PATL2C9JE40 543 aaKnown RBP9.56□□□□□ -0.88
LIMCH1-216ENST00000512820 IL2RBP14784 551 aa9.56□□□□□ -0.88
LIMCH1-216ENST00000512820 CCT6AP40227 531 aaKnown RBP9.56□□□□□ -0.88
LIMCH1-216ENST00000512820 MATR3P43243 847 aaKnown RBP eCLIP9.56□□□□□ -0.88
LIMCH1-216ENST00000512820 PTPN12Q05209 780 aaKnown RBP9.56□□□□□ -0.88
LIMCH1-216ENST00000512820 SYCP1Q15431 976 aa9.56□□□□□ -0.88
LIMCH1-216ENST00000512820 TDRD12Q587J7 1177 aaKnown RBP9.56□□□□□ -0.88
LIMCH1-216ENST00000512820 FAM114A1Q8IWE2 563 aa9.56□□□□□ -0.88
LIMCH1-216ENST00000512820 PPP1R13BQ96KQ4 1090 aa9.56□□□□□ -0.88
LIMCH1-216ENST00000512820 PHACTR2O75167 634 aa9.55□□□□□ -0.88
LIMCH1-216ENST00000512820 FGFR1OPO95684 399 aaKnown RBP9.55□□□□□ -0.88
LIMCH1-216ENST00000512820 UBXN1Q04323 297 aa9.55□□□□□ -0.88
LIMCH1-216ENST00000512820 CKAP4Q07065 602 aaKnown RBP9.55□□□□□ -0.88
LIMCH1-216ENST00000512820 SLC4A8Q2Y0W8 1093 aa9.55□□□□□ -0.88
LIMCH1-216ENST00000512820 ODF2Q5BJF6 829 aa9.55□□□□□ -0.88
LIMCH1-216ENST00000512820 TTLL7Q6ZT98 887 aa9.55□□□□□ -0.88
LIMCH1-216ENST00000512820 IQUBQ8NA54 791 aa9.55□□□□□ -0.88
LIMCH1-216ENST00000512820 ARMT1Q9H993 441 aa9.55□□□□□ -0.88
LIMCH1-216ENST00000512820 KCNJ14Q9UNX9 436 aa9.55□□□□□ -0.88
LIMCH1-216ENST00000512820 CARMIL3Q8ND23 1372 aa9.55□□□□□ -0.88
LIMCH1-216ENST00000512820 MYO3AQ8NEV4 1616 aa9.55□□□□□ -0.88
LIMCH1-216ENST00000512820 ADKP55263 362 aaKnown RBP9.55□□□□□ -0.88
LIMCH1-216ENST00000512820 CHMP4BP1P59074 171 aa9.55□□□□□ -0.88
LIMCH1-216ENST00000512820 ZNF174Q15697 407 aa9.55□□□□□ -0.88
LIMCH1-216ENST00000512820 SPECC1LQ69YQ0 1117 aa9.55□□□□□ -0.88
LIMCH1-216ENST00000512820 SAMD1Q6SPF0 538 aaPredicted RBP9.55□□□□□ -0.88
LIMCH1-216ENST00000512820 ALS2CR12Q96Q35 445 aa9.55□□□□□ -0.88
LIMCH1-216ENST00000512820 TSG101Q99816 390 aa9.55□□□□□ -0.88
LIMCH1-216ENST00000512820 RTL9Q8NET4 1388 aa9.55□□□□□ -0.88
LIMCH1-216ENST00000512820 VWA3AA6NCI4 1184 aa9.55□□□□□ -0.88
LIMCH1-216ENST00000512820 PSMA7O14818 248 aa9.55□□□□□ -0.88
LIMCH1-216ENST00000512820 MYO1BO43795 1136 aa9.55□□□□□ -0.88
LIMCH1-216ENST00000512820 IVLP07476 585 aa9.55□□□□□ -0.88
LIMCH1-216ENST00000512820 AMPD3Q01432 767 aa9.55□□□□□ -0.88
LIMCH1-216ENST00000512820 ENOX2Q16206 610 aaKnown RBP9.55□□□□□ -0.88
LIMCH1-216ENST00000512820 HDXQ7Z353 690 aa9.55□□□□□ -0.88
LIMCH1-216ENST00000512820 LINC00301Q8NCQ3 95 aa9.55□□□□□ -0.88
LIMCH1-216ENST00000512820 ZNF287Q9HBT7 754 aa9.55□□□□□ -0.88
LIMCH1-216ENST00000512820 FANCLQ9NW38 375 aa9.55□□□□□ -0.88
LIMCH1-216ENST00000512820 PCDH11XQ9BZA7 1347 aa9.55□□□□□ -0.88
LIMCH1-216ENST00000512820 PCDH11YQ9BZA8 1340 aa9.55□□□□□ -0.88
LIMCH1-216ENST00000512820 MAGEB6P1A0A0J9YX57 407 aa9.55□□□□□ -0.88
LIMCH1-216ENST00000512820 EXOC5O00471 708 aa9.55□□□□□ -0.88
LIMCH1-216ENST00000512820 IDEP14735 1019 aa9.55□□□□□ -0.88
LIMCH1-216ENST00000512820 CTDSPL2Q05D32 466 aa9.55□□□□□ -0.88
LIMCH1-216ENST00000512820 NCBP1Q09161 790 aaKnown RBP9.55□□□□□ -0.88
LIMCH1-216ENST00000512820 MAST3O60307 1309 aa9.54□□□□□ -0.88
LIMCH1-216ENST00000512820 ZNF532Q9HCE3 1301 aa9.54□□□□□ -0.88
LIMCH1-216ENST00000512820 ERLIN2O94905 339 aa9.54□□□□□ -0.88
LIMCH1-216ENST00000512820 MCM7P33993 719 aa9.54□□□□□ -0.88
LIMCH1-216ENST00000512820 ARHGEF25Q86VW2 580 aa9.54□□□□□ -0.88
LIMCH1-216ENST00000512820 PLA2G4DQ86XP0 818 aa9.54□□□□□ -0.88
LIMCH1-216ENST00000512820 CLIC6Q96NY7 704 aa9.54□□□□□ -0.88
LIMCH1-216ENST00000512820 RSPH14Q9UHP6 348 aa9.54□□□□□ -0.88
LIMCH1-216ENST00000512820 SERTAD1Q9UHV2 236 aa9.54□□□□□ -0.88
LIMCH1-216ENST00000512820 AKR1B10O60218 316 aa9.54□□□□□ -0.88
LIMCH1-216ENST00000512820 CT47A1Q5JQC4 288 aaPredicted RBP9.54□□□□□ -0.88
LIMCH1-216ENST00000512820 CALML4Q96GE6 196 aa9.54□□□□□ -0.88
LIMCH1-216ENST00000512820 CCDC43Q96MW1 224 aaKnown RBP9.54□□□□□ -0.88
LIMCH1-216ENST00000512820 KCNF1Q9H3M0 494 aa9.54□□□□□ -0.88
LIMCH1-216ENST00000512820 EXOC1Q9NV70 894 aa9.54□□□□□ -0.88
LIMCH1-216ENST00000512820 POLR3EQ9NVU0 708 aa9.54□□□□□ -0.88
LIMCH1-216ENST00000512820 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.54□□□□□ -0.88
LIMCH1-216ENST00000512820 TCEAL9Q9UHQ7 104 aa9.54□□□□□ -0.88
LIMCH1-216ENST00000512820 WDHD1O75717 1129 aaPredicted RBP9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms