RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 SEMA3EO15041 775 aa14.35□□□□□ -0.11
HMGCS1-204ENST00000507293 LDHBP07195 334 aaKnown RBP14.35□□□□□ -0.11
HMGCS1-204ENST00000507293 ADORA1P30542 326 aa14.35□□□□□ -0.11
HMGCS1-204ENST00000507293 CAP1Q01518 475 aa14.35□□□□□ -0.11
HMGCS1-204ENST00000507293 SP3Q02447 781 aa14.35□□□□□ -0.11
HMGCS1-204ENST00000507293 DCAF15Q66K64 600 aa14.35□□□□□ -0.11
HMGCS1-204ENST00000507293 INTS3Q68E01 1043 aaKnown RBP14.35□□□□□ -0.11
HMGCS1-204ENST00000507293 CDC42EP5Q6NZY7 148 aa14.35□□□□□ -0.11
HMGCS1-204ENST00000507293 MIGA2Q7L4E1 593 aa14.35□□□□□ -0.11
HMGCS1-204ENST00000507293 ERO1BQ86YB8 467 aa14.35□□□□□ -0.11
HMGCS1-204ENST00000507293 FAM43AQ8N2R8 423 aa14.35□□□□□ -0.11
HMGCS1-204ENST00000507293 FAM151AQ8WW52 585 aa14.35□□□□□ -0.11
HMGCS1-204ENST00000507293 ZNF341Q9BYN7 854 aa14.35□□□□□ -0.11
HMGCS1-204ENST00000507293 COPRSQ9NQ92 184 aa14.35□□□□□ -0.11
HMGCS1-204ENST00000507293 DENND2AQ9ULE3 1009 aa14.35□□□□□ -0.11
HMGCS1-204ENST00000507293 TNRC18O15417 2968 aaPredicted RBP14.35□□□□□ -0.11
HMGCS1-204ENST00000507293 SALL1Q9NSC2 1324 aa14.35□□□□□ -0.11
HMGCS1-204ENST00000507293 TCP10Q12799 353 aa14.34□□□□□ -0.11
HMGCS1-204ENST00000507293 NFIAQ12857 509 aa14.34□□□□□ -0.11
HMGCS1-204ENST00000507293 CCDC102BQ68D86 513 aa14.34□□□□□ -0.11
HMGCS1-204ENST00000507293 ARHGAP45Q92619 1136 aa14.34□□□□□ -0.11
HMGCS1-204ENST00000507293 EFCC1Q9HA90 598 aa14.34□□□□□ -0.11
HMGCS1-204ENST00000507293 ZFYVE28Q9HCC9 887 aa14.34□□□□□ -0.11
HMGCS1-204ENST00000507293 PTPN22Q9Y2R2 807 aa14.34□□□□□ -0.11
HMGCS1-204ENST00000507293 SLC34A2O95436 690 aa14.33□□□□□ -0.12
HMGCS1-204ENST00000507293 GNAI3P08754 354 aa14.33□□□□□ -0.12
HMGCS1-204ENST00000507293 CETPP11597 493 aa14.33□□□□□ -0.12
HMGCS1-204ENST00000507293 INPP5BP32019 993 aa14.33□□□□□ -0.12
HMGCS1-204ENST00000507293 PPIL2Q13356 520 aa14.33□□□□□ -0.12
HMGCS1-204ENST00000507293 USP40Q9NVE5 1235 aa14.33□□□□□ -0.12
HMGCS1-204ENST00000507293 DOCK1Q14185 1865 aa14.32□□□□□ -0.12
HMGCS1-204ENST00000507293 IRF6O14896 467 aa14.32□□□□□ -0.12
HMGCS1-204ENST00000507293 SRGAP3O43295 1099 aa14.32□□□□□ -0.12
HMGCS1-204ENST00000507293 TIMM10P62072 90 aa14.32□□□□□ -0.12
HMGCS1-204ENST00000507293 SNAPC2Q13487 334 aa14.32□□□□□ -0.12
HMGCS1-204ENST00000507293 FAM198AQ9UFP1 575 aa14.32□□□□□ -0.12
HMGCS1-204ENST00000507293 TNNQ9UQP3 1299 aa14.32□□□□□ -0.12
HMGCS1-204ENST00000507293 A0A1B0GUL7 405 aa14.31□□□□□ -0.12
HMGCS1-204ENST00000507293 BTBD19C9JJ37 291 aa14.31□□□□□ -0.12
HMGCS1-204ENST00000507293 ZBTB22O15209 634 aa14.31□□□□□ -0.12
HMGCS1-204ENST00000507293 TFCP2Q12800 502 aa14.31□□□□□ -0.12
HMGCS1-204ENST00000507293 MTX1Q13505 466 aa14.31□□□□□ -0.12
HMGCS1-204ENST00000507293 RASGRF1Q13972 1273 aa14.31□□□□□ -0.12
HMGCS1-204ENST00000507293 DZIP1Q86YF9 867 aaKnown RBP14.31□□□□□ -0.12
HMGCS1-204ENST00000507293 ZGPATQ8N5A5 531 aaKnown RBP14.31□□□□□ -0.12
HMGCS1-204ENST00000507293 ZCCHC17Q9NP64 241 aaKnown RBP14.31□□□□□ -0.12
HMGCS1-204ENST00000507293 GAKO14976 1311 aa14.31□□□□□ -0.12
HMGCS1-204ENST00000507293 RFX7Q2KHR2 1363 aa14.31□□□□□ -0.12
HMGCS1-204ENST00000507293 PTPRFP10586 1907 aa14.31□□□□□ -0.12
HMGCS1-204ENST00000507293 POTEFA5A3E0 1075 aa14.3□□□□□ -0.12
HMGCS1-204ENST00000507293 WDHD1O75717 1129 aaPredicted RBP14.3□□□□□ -0.12
HMGCS1-204ENST00000507293 TRIM27P14373 513 aa14.3□□□□□ -0.12
HMGCS1-204ENST00000507293 PPATQ06203 517 aa14.3□□□□□ -0.12
HMGCS1-204ENST00000507293 PRPF38BQ5VTL8 546 aaKnown RBP14.3□□□□□ -0.12
HMGCS1-204ENST00000507293 ZFPM1Q8IX07 1006 aa14.3□□□□□ -0.12
HMGCS1-204ENST00000507293 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.3□□□□□ -0.12
HMGCS1-204ENST00000507293 FRAT1Q92837 279 aaPredicted RBP14.3□□□□□ -0.12
HMGCS1-204ENST00000507293 ARMC5Q96C12 935 aa14.3□□□□□ -0.12
HMGCS1-204ENST00000507293 XAGE2Q96GT9 111 aa14.3□□□□□ -0.12
HMGCS1-204ENST00000507293 ABCF2Q9UG63 623 aa14.3□□□□□ -0.12
HMGCS1-204ENST00000507293 ZNF112Q9UJU3 913 aa14.3□□□□□ -0.12
HMGCS1-204ENST00000507293 AKAP2Q9Y2D5 859 aa14.3□□□□□ -0.12
HMGCS1-204ENST00000507293 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.3□□□□□ -0.12
HMGCS1-204ENST00000507293 PDS5AQ29RF7 1337 aaKnown RBP14.3□□□□□ -0.12
HMGCS1-204ENST00000507293 MAST2Q6P0Q8 1798 aa14.29□□□□□ -0.12
HMGCS1-204ENST00000507293 PHIPQ8WWQ0 1821 aa14.29□□□□□ -0.12
HMGCS1-204ENST00000507293 IPO8O15397 1037 aaKnown RBP14.29□□□□□ -0.12
HMGCS1-204ENST00000507293 TLR2O60603 784 aa14.29□□□□□ -0.12
HMGCS1-204ENST00000507293 BCAR3O75815 825 aa14.29□□□□□ -0.12
HMGCS1-204ENST00000507293 RGS3P49796 1198 aa14.29□□□□□ -0.12
HMGCS1-204ENST00000507293 MVPQ14764 893 aaKnown RBP14.29□□□□□ -0.12
HMGCS1-204ENST00000507293 ARHGEF6Q15052 776 aa14.29□□□□□ -0.12
HMGCS1-204ENST00000507293 NOL9Q5SY16 702 aaKnown RBP14.29□□□□□ -0.12
HMGCS1-204ENST00000507293 ATF7IPQ6VMQ6 1270 aa14.29□□□□□ -0.12
HMGCS1-204ENST00000507293 CLUAP1Q96AJ1 413 aa14.29□□□□□ -0.12
HMGCS1-204ENST00000507293 PTCH2Q9Y6C5 1203 aa14.29□□□□□ -0.12
HMGCS1-204ENST00000507293 ATRNL1Q5VV63 1379 aa14.29□□□□□ -0.12
HMGCS1-204ENST00000507293 MGAMO43451 1857 aa14.29□□□□□ -0.12
HMGCS1-204ENST00000507293 ENTPD3O75355 529 aa14.28□□□□□ -0.12
HMGCS1-204ENST00000507293 GNAI2P04899 355 aa14.28□□□□□ -0.12
HMGCS1-204ENST00000507293 ATAD5Q96QE3 1844 aa14.28□□□□□ -0.12
HMGCS1-204ENST00000507293 IDI2Q9BXS1 227 aa14.28□□□□□ -0.12
HMGCS1-204ENST00000507293 ARHGAP39Q9C0H5 1083 aa14.28□□□□□ -0.12
HMGCS1-204ENST00000507293 KCNH4Q9UQ05 1017 aa14.28□□□□□ -0.12
HMGCS1-204ENST00000507293 MROH7-TTC4A0A0A0MT08 1334 aa14.27□□□□□ -0.12
HMGCS1-204ENST00000507293 PNMA6EA0A0J9YXQ4 647 aa14.27□□□□□ -0.13
HMGCS1-204ENST00000507293 BTDP43251 543 aa14.27□□□□□ -0.13
HMGCS1-204ENST00000507293 LACTBP83111 547 aaPredicted RBP14.27□□□□□ -0.13
HMGCS1-204ENST00000507293 KIF22Q14807 665 aa14.27□□□□□ -0.13
HMGCS1-204ENST00000507293 SPTY2D1Q68D10 685 aaPredicted RBP14.27□□□□□ -0.13
HMGCS1-204ENST00000507293 SH3BP5LQ7L8J4 393 aa14.27□□□□□ -0.13
HMGCS1-204ENST00000507293 ANKRD23Q86SG2 305 aa14.27□□□□□ -0.13
HMGCS1-204ENST00000507293 ZSCAN29Q8IWY8 852 aaPredicted RBP14.27□□□□□ -0.13
HMGCS1-204ENST00000507293 SLF2Q8IX21 1173 aa14.27□□□□□ -0.13
HMGCS1-204ENST00000507293 NEUROD6Q96NK8 337 aa14.27□□□□□ -0.13
HMGCS1-204ENST00000507293 KIAA0100Q14667 2235 aaKnown RBP14.26□□□□□ -0.13
HMGCS1-204ENST00000507293 PDHXO00330 501 aa14.26□□□□□ -0.13
HMGCS1-204ENST00000507293 ECM2O94769 699 aaPredicted RBP14.26□□□□□ -0.13
HMGCS1-204ENST00000507293 SLC9C1Q4G0N8 1177 aa14.26□□□□□ -0.13
HMGCS1-204ENST00000507293 ERICH6Q7L0X2 663 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms