RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 ZNF500O60304 480 aaPredicted RBP12.27□□□□□ -0.44
LIMCH1-205ENST00000503057 PLCG2P16885 1265 aa12.27□□□□□ -0.44
LIMCH1-205ENST00000503057 CCDC102AQ96A19 550 aa12.27□□□□□ -0.44
LIMCH1-205ENST00000503057 ZKSCAN3Q9BRR0 538 aa12.27□□□□□ -0.44
LIMCH1-205ENST00000503057 VAT1LQ9HCJ6 419 aa12.27□□□□□ -0.44
LIMCH1-205ENST00000503057 COL3A1P02461 1466 aaPredicted RBP12.27□□□□□ -0.45
LIMCH1-205ENST00000503057 MCM9Q9NXL9 1143 aa12.27□□□□□ -0.45
LIMCH1-205ENST00000503057 RTCBQ9Y3I0 505 aaKnown RBP12.27□□□□□ -0.45
LIMCH1-205ENST00000503057 SLU7O95391 586 aaKnown RBP12.27□□□□□ -0.45
LIMCH1-205ENST00000503057 NLRP12P59046 1061 aa12.27□□□□□ -0.45
LIMCH1-205ENST00000503057 ZMYM1Q5SVZ6 1142 aa12.27□□□□□ -0.45
LIMCH1-205ENST00000503057 IMPACTQ9P2X3 320 aa12.27□□□□□ -0.45
LIMCH1-205ENST00000503057 PATL2C9JE40 543 aaKnown RBP12.27□□□□□ -0.45
LIMCH1-205ENST00000503057 BMS1Q14692 1282 aaKnown RBP12.27□□□□□ -0.45
LIMCH1-205ENST00000503057 LRRC24Q50LG9 513 aa12.27□□□□□ -0.45
LIMCH1-205ENST00000503057 KCNH3Q9ULD8 1083 aa12.27□□□□□ -0.45
LIMCH1-205ENST00000503057 CABP5Q9NP86 173 aa12.26□□□□□ -0.45
LIMCH1-205ENST00000503057 SPATA31D1Q6ZQQ2 1576 aa12.26□□□□□ -0.45
LIMCH1-205ENST00000503057 ADALQ6DHV7 355 aa12.26□□□□□ -0.45
LIMCH1-205ENST00000503057 TICAM2Q86XR7 235 aa12.26□□□□□ -0.45
LIMCH1-205ENST00000503057 CARD10Q9BWT7 1032 aa12.26□□□□□ -0.45
LIMCH1-205ENST00000503057 TMX1Q9H3N1 280 aa12.26□□□□□ -0.45
LIMCH1-205ENST00000503057 EHMT1Q9H9B1 1298 aa12.26□□□□□ -0.45
LIMCH1-205ENST00000503057 C6orf50Q9HD87 102 aa12.26□□□□□ -0.45
LIMCH1-205ENST00000503057 DNAI1Q9UI46 699 aa12.26□□□□□ -0.45
LIMCH1-205ENST00000503057 MAP3K15Q6ZN16 1313 aa12.26□□□□□ -0.45
LIMCH1-205ENST00000503057 PSMA7O14818 248 aa12.26□□□□□ -0.45
LIMCH1-205ENST00000503057 TOM1O60784 492 aa12.26□□□□□ -0.45
LIMCH1-205ENST00000503057 ZNF202O95125 648 aa12.26□□□□□ -0.45
LIMCH1-205ENST00000503057 LDHBP07195 334 aaKnown RBP12.26□□□□□ -0.45
LIMCH1-205ENST00000503057 TNIP1Q15025 636 aa12.26□□□□□ -0.45
LIMCH1-205ENST00000503057 KRT40Q6A162 431 aa12.26□□□□□ -0.45
LIMCH1-205ENST00000503057 TECPR2O15040 1411 aa12.26□□□□□ -0.45
LIMCH1-205ENST00000503057 NAPAP54920 295 aa12.26□□□□□ -0.45
LIMCH1-205ENST00000503057 IQUBQ8NA54 791 aa12.26□□□□□ -0.45
LIMCH1-205ENST00000503057 WDR17Q8IZU2 1322 aa12.26□□□□□ -0.45
LIMCH1-205ENST00000503057 HEG1Q9ULI3 1381 aa12.25□□□□□ -0.45
LIMCH1-205ENST00000503057 CCDC175P0C221 793 aa12.25□□□□□ -0.45
LIMCH1-205ENST00000503057 ALS2CR12Q96Q35 445 aa12.25□□□□□ -0.45
LIMCH1-205ENST00000503057 ADGRB2O60241 1585 aa12.25□□□□□ -0.45
LIMCH1-205ENST00000503057 SASH1O94885 1247 aa12.25□□□□□ -0.45
LIMCH1-205ENST00000503057 OTUD7BQ6GQQ9 843 aa12.25□□□□□ -0.45
LIMCH1-205ENST00000503057 CLEC17AQ6ZS10 378 aa12.25□□□□□ -0.45
LIMCH1-205ENST00000503057 ZNF589Q86UQ0 364 aaPredicted RBP12.25□□□□□ -0.45
LIMCH1-205ENST00000503057 LIG1P18858 919 aa12.25□□□□□ -0.45
LIMCH1-205ENST00000503057 NECTIN1Q15223 517 aa12.25□□□□□ -0.45
LIMCH1-205ENST00000503057 HSP90AA4PQ58FG1 418 aa12.25□□□□□ -0.45
LIMCH1-205ENST00000503057 VPS36Q86VN1 386 aa12.25□□□□□ -0.45
LIMCH1-205ENST00000503057 ZMYM6O95789 1325 aa12.25□□□□□ -0.45
LIMCH1-205ENST00000503057 MYO1BO43795 1136 aa12.25□□□□□ -0.45
LIMCH1-205ENST00000503057 PTPN12Q05209 780 aaKnown RBP12.25□□□□□ -0.45
LIMCH1-205ENST00000503057 CTDSPL2Q05D32 466 aa12.25□□□□□ -0.45
LIMCH1-205ENST00000503057 SCRN1Q12765 414 aa12.25□□□□□ -0.45
LIMCH1-205ENST00000503057 TAF3Q5VWG9 929 aa12.25□□□□□ -0.45
LIMCH1-205ENST00000503057 RRP36Q96EU6 259 aaKnown RBP12.25□□□□□ -0.45
LIMCH1-205ENST00000503057 CRACR2AQ9BSW2 395 aa12.25□□□□□ -0.45
LIMCH1-205ENST00000503057 TTC6Q86TZ1 520 aa12.24□□□□□ -0.45
LIMCH1-205ENST00000503057 DIS3L2Q8IYB7 885 aaKnown RBP12.24□□□□□ -0.45
LIMCH1-205ENST00000503057 DIP2AQ14689 1571 aa12.24□□□□□ -0.45
LIMCH1-205ENST00000503057 IDEP14735 1019 aa12.24□□□□□ -0.45
LIMCH1-205ENST00000503057 MYSM1Q5VVJ2 828 aa12.24□□□□□ -0.45
LIMCH1-205ENST00000503057 DTNBO60941 627 aa12.24□□□□□ -0.45
LIMCH1-205ENST00000503057 NR1I2O75469 434 aa12.24□□□□□ -0.45
LIMCH1-205ENST00000503057 HIBADHP31937 336 aaKnown RBP12.24□□□□□ -0.45
LIMCH1-205ENST00000503057 MCM7P33993 719 aa12.24□□□□□ -0.45
LIMCH1-205ENST00000503057 RDXP35241 583 aaKnown RBP12.24□□□□□ -0.45
LIMCH1-205ENST00000503057 AKNAD1Q5T1N1 836 aa12.24□□□□□ -0.45
LIMCH1-205ENST00000503057 CCDC40Q4G0X9 1142 aa12.24□□□□□ -0.45
LIMCH1-205ENST00000503057 TMEM87AQ8NBN3 555 aa12.24□□□□□ -0.45
LIMCH1-205ENST00000503057 KIF2CQ99661 725 aa12.24□□□□□ -0.45
LIMCH1-205ENST00000503057 TRIM21P19474 475 aaKnown RBP12.24□□□□□ -0.45
LIMCH1-205ENST00000503057 PDIA3P30101 505 aaKnown RBP12.24□□□□□ -0.45
LIMCH1-205ENST00000503057 CHAMP1Q96JM3 812 aa12.24□□□□□ -0.45
LIMCH1-205ENST00000503057 MED23Q9ULK4 1368 aa12.24□□□□□ -0.45
LIMCH1-205ENST00000503057 ATP10DQ9P241 1426 aa12.24□□□□□ -0.45
LIMCH1-205ENST00000503057 CYP21A2P08686 494 aa12.23□□□□□ -0.45
LIMCH1-205ENST00000503057 GNA11P29992 359 aa12.23□□□□□ -0.45
LIMCH1-205ENST00000503057 ADAMTS13Q76LX8 1427 aa12.23□□□□□ -0.45
LIMCH1-205ENST00000503057 MYRIPQ8NFW9 859 aa12.23□□□□□ -0.45
LIMCH1-205ENST00000503057 CYLC1P35663 651 aaPredicted RBP12.23□□□□□ -0.45
LIMCH1-205ENST00000503057 TDRD12Q587J7 1177 aaKnown RBP12.23□□□□□ -0.45
LIMCH1-205ENST00000503057 DTHD1Q6ZMT9 781 aa12.23□□□□□ -0.45
LIMCH1-205ENST00000503057 PHKBQ93100 1093 aa12.23□□□□□ -0.45
LIMCH1-205ENST00000503057 SEPT11Q9NVA2 429 aaKnown RBP12.23□□□□□ -0.45
LIMCH1-205ENST00000503057 BICDL2A1A5D9 508 aa12.23□□□□□ -0.45
LIMCH1-205ENST00000503057 FGAP02671 866 aa12.23□□□□□ -0.45
LIMCH1-205ENST00000503057 PAFAH1B1P43034 410 aa12.23□□□□□ -0.45
LIMCH1-205ENST00000503057 UBE3CQ15386 1083 aa12.23□□□□□ -0.45
LIMCH1-205ENST00000503057 ZFYVE27Q5T4F4 411 aa12.23□□□□□ -0.45
LIMCH1-205ENST00000503057 MLKLQ8NB16 471 aa12.23□□□□□ -0.45
LIMCH1-205ENST00000503057 FAM193AP78312 1265 aa12.23□□□□□ -0.45
LIMCH1-205ENST00000503057 CERS3Q8IU89 383 aa12.23□□□□□ -0.45
LIMCH1-205ENST00000503057 KRT222Q8N1A0 295 aa12.23□□□□□ -0.45
LIMCH1-205ENST00000503057 USP28Q96RU2 1077 aa12.23□□□□□ -0.45
LIMCH1-205ENST00000503057 CCDC94Q9BW85 323 aaPredicted RBP12.23□□□□□ -0.45
LIMCH1-205ENST00000503057 RFX7Q2KHR2 1363 aa12.22□□□□□ -0.45
LIMCH1-205ENST00000503057 FANCCQ00597 558 aa12.22□□□□□ -0.45
LIMCH1-205ENST00000503057 PRDM10Q9NQV6 1147 aa12.22□□□□□ -0.45
LIMCH1-205ENST00000503057 PDE6AP16499 860 aa12.22□□□□□ -0.45
LIMCH1-205ENST00000503057 RIMBP3CA6NJZ7 1639 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms