RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 SLC15A2Q16348 729 aa13.97□□□□□ -0.17
NUP54-202ENST00000502850 FBXO18Q8NFZ0 1043 aa13.97□□□□□ -0.17
NUP54-202ENST00000502850 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.97□□□□□ -0.17
NUP54-202ENST00000502850 WWC3Q9ULE0 1092 aa13.97□□□□□ -0.17
NUP54-202ENST00000502850 HPS5Q9UPZ3 1129 aa13.97□□□□□ -0.17
NUP54-202ENST00000502850 NID2Q14112 1375 aa13.96□□□□□ -0.17
NUP54-202ENST00000502850 NR1I2O75469 434 aa13.96□□□□□ -0.17
NUP54-202ENST00000502850 FDPSP14324 419 aaKnown RBP13.96□□□□□ -0.17
NUP54-202ENST00000502850 LIFRP42702 1097 aa13.96□□□□□ -0.17
NUP54-202ENST00000502850 FAM160A1Q05DH4 1040 aa13.96□□□□□ -0.17
NUP54-202ENST00000502850 ITPK1Q13572 414 aa13.96□□□□□ -0.17
NUP54-202ENST00000502850 RASGRF1Q13972 1273 aa13.96□□□□□ -0.17
NUP54-202ENST00000502850 SART3Q15020 963 aaKnown RBP13.96□□□□□ -0.17
NUP54-202ENST00000502850 CAMK4Q16566 473 aa13.96□□□□□ -0.17
NUP54-202ENST00000502850 SGMS1Q86VZ5 419 aa13.96□□□□□ -0.17
NUP54-202ENST00000502850 CCAR1Q8IX12 1150 aaKnown RBP13.96□□□□□ -0.17
NUP54-202ENST00000502850 USP28Q96RU2 1077 aa13.96□□□□□ -0.17
NUP54-202ENST00000502850 RNF41Q9H4P4 317 aaPredicted RBP13.96□□□□□ -0.17
NUP54-202ENST00000502850 POLR3EQ9NVU0 708 aa13.96□□□□□ -0.17
NUP54-202ENST00000502850 ECM29Q5VYK3 1845 aa13.96□□□□□ -0.18
NUP54-202ENST00000502850 COL24A1Q17RW2 1714 aa13.95□□□□□ -0.18
NUP54-202ENST00000502850 CNTNAP4Q9C0A0 1308 aa13.95□□□□□ -0.18
NUP54-202ENST00000502850 STK36Q9NRP7 1315 aa13.95□□□□□ -0.18
NUP54-202ENST00000502850 ME1P48163 572 aa13.95□□□□□ -0.18
NUP54-202ENST00000502850 STX1AQ16623 288 aa13.95□□□□□ -0.18
NUP54-202ENST00000502850 ANO6Q4KMQ2 910 aa13.95□□□□□ -0.18
NUP54-202ENST00000502850 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.95□□□□□ -0.18
NUP54-202ENST00000502850 TBC1D10CQ8IV04 446 aa13.95□□□□□ -0.18
NUP54-202ENST00000502850 MAGEB6Q8N7X4 407 aa13.95□□□□□ -0.18
NUP54-202ENST00000502850 TDRD7Q8NHU6 1098 aaKnown RBP13.95□□□□□ -0.18
NUP54-202ENST00000502850 MRPS27Q92552 414 aaKnown RBP13.95□□□□□ -0.18
NUP54-202ENST00000502850 WASF1Q92558 559 aa13.95□□□□□ -0.18
NUP54-202ENST00000502850 PDGFDQ9GZP0 370 aaPredicted RBP13.95□□□□□ -0.18
NUP54-202ENST00000502850 PPP1R1BQ9UD71 204 aaPredicted RBP13.95□□□□□ -0.18
NUP54-202ENST00000502850 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.95□□□□□ -0.189e-6■□□□□ 11.3
NUP54-202ENST00000502850 ZBTB43O43298 467 aa13.94□□□□□ -0.18
NUP54-202ENST00000502850 MBD4O95243 580 aa13.94□□□□□ -0.18
NUP54-202ENST00000502850 RCAN1P53805 252 aa13.94□□□□□ -0.18
NUP54-202ENST00000502850 STK38Q15208 465 aa13.94□□□□□ -0.18
NUP54-202ENST00000502850 SF3A1Q15459 793 aaKnown RBP13.94□□□□□ -0.18
NUP54-202ENST00000502850 ADALQ6DHV7 355 aa13.94□□□□□ -0.18
NUP54-202ENST00000502850 TMED8Q6PL24 325 aaPredicted RBP13.94□□□□□ -0.18
NUP54-202ENST00000502850 SYNE3Q6ZMZ3 975 aa13.94□□□□□ -0.18
NUP54-202ENST00000502850 CKAP2LQ8IYA6 745 aa13.94□□□□□ -0.18
NUP54-202ENST00000502850 IFNL3Q8IZI9 196 aa13.94□□□□□ -0.18
NUP54-202ENST00000502850 NBPF3Q9H094 633 aa13.94□□□□□ -0.18
NUP54-202ENST00000502850 FOSBP53539 338 aa13.93□□□□□ -0.18
NUP54-202ENST00000502850 TRIM29Q14134 588 aa13.93□□□□□ -0.18
NUP54-202ENST00000502850 UBE4AQ14139 1066 aa13.93□□□□□ -0.18
NUP54-202ENST00000502850 SF3B3Q15393 1217 aaKnown RBP13.93□□□□□ -0.18
NUP54-202ENST00000502850 APOA5Q6Q788 366 aa13.93□□□□□ -0.18
NUP54-202ENST00000502850 NFXL1Q6ZNB6 911 aa13.93□□□□□ -0.18
NUP54-202ENST00000502850 ANKRD18AQ8IVF6 992 aa13.93□□□□□ -0.18
NUP54-202ENST00000502850 TMTC2Q8N394 836 aa13.93□□□□□ -0.18
NUP54-202ENST00000502850 HELBQ8NG08 1087 aaPredicted RBP13.93□□□□□ -0.18
NUP54-202ENST00000502850 NYXQ9GZU5 481 aa13.93□□□□□ -0.18
NUP54-202ENST00000502850 MYH13Q9UKX3 1938 aa13.93□□□□□ -0.18
NUP54-202ENST00000502850 MAST2Q6P0Q8 1798 aa13.93□□□□□ -0.18
NUP54-202ENST00000502850 ZNF804BA4D1E1 1349 aa13.93□□□□□ -0.18
NUP54-202ENST00000502850 TDO2P48775 406 aa13.93□□□□□ -0.18
NUP54-202ENST00000502850 ZNF165P49910 485 aa13.93□□□□□ -0.18
NUP54-202ENST00000502850 PLCB2Q00722 1185 aa13.93□□□□□ -0.18
NUP54-202ENST00000502850 CEBPZQ03701 1054 aaKnown RBP13.93□□□□□ -0.18
NUP54-202ENST00000502850 CHRNDQ07001 517 aa13.93□□□□□ -0.18
NUP54-202ENST00000502850 TMEM67Q5HYA8 995 aa13.93□□□□□ -0.18
NUP54-202ENST00000502850 AKNAD1Q5T1N1 836 aa13.93□□□□□ -0.18
NUP54-202ENST00000502850 MYSM1Q5VVJ2 828 aa13.93□□□□□ -0.18
NUP54-202ENST00000502850 MFSD6Q6ZSS7 791 aa13.93□□□□□ -0.18
NUP54-202ENST00000502850 JMYQ8N9B5 988 aa13.93□□□□□ -0.18
NUP54-202ENST00000502850 FSIP1Q8NA03 581 aa13.93□□□□□ -0.18
NUP54-202ENST00000502850 STAG1Q8WVM7 1258 aa13.93□□□□□ -0.18
NUP54-202ENST00000502850 PIBF1Q8WXW3 757 aa13.93□□□□□ -0.18
NUP54-202ENST00000502850 NAT10Q9H0A0 1025 aaKnown RBP13.93□□□□□ -0.18
NUP54-202ENST00000502850 CBX8Q9HC52 389 aa13.93□□□□□ -0.18
NUP54-202ENST00000502850 SEC31BQ9NQW1 1179 aa13.93□□□□□ -0.18
NUP54-202ENST00000502850 LRRC4BQ9NT99 713 aa13.93□□□□□ -0.18
NUP54-202ENST00000502850 ANO10Q9NW15 660 aa13.93□□□□□ -0.18
NUP54-202ENST00000502850 ERICH2A1L162 156 aa13.92□□□□□ -0.18
NUP54-202ENST00000502850 CCDC69A6NI79 296 aa13.92□□□□□ -0.18
NUP54-202ENST00000502850 FAM177BA6PVY3 158 aa13.92□□□□□ -0.18
NUP54-202ENST00000502850 GOLGA8AA7E2F4 631 aa13.92□□□□□ -0.18
NUP54-202ENST00000502850 B4E1Z4 1266 aa13.92□□□□□ -0.18
NUP54-202ENST00000502850 GOLGA6L19H0YKK7 550 aa13.92□□□□□ -0.18
NUP54-202ENST00000502850 SEMA3EO15041 775 aa13.92□□□□□ -0.18
NUP54-202ENST00000502850 ZBTB7AO95365 584 aa13.92□□□□□ -0.18
NUP54-202ENST00000502850 GUCY1B3Q02153 619 aa13.92□□□□□ -0.18
NUP54-202ENST00000502850 SLC27A3Q5K4L6 730 aa13.92□□□□□ -0.18
NUP54-202ENST00000502850 LINC00301Q8NCQ3 95 aa13.92□□□□□ -0.18
NUP54-202ENST00000502850 GPHNQ9NQX3 736 aaPredicted RBP13.92□□□□□ -0.18
NUP54-202ENST00000502850 LRP2BPQ9P2M1 347 aa13.92□□□□□ -0.18
NUP54-202ENST00000502850 SLC12A7Q9Y666 1083 aa13.92□□□□□ -0.18
NUP54-202ENST00000502850 NEDD4P46934 1319 aa13.91□□□□□ -0.18
NUP54-202ENST00000502850 PDS5AQ29RF7 1337 aaKnown RBP13.91□□□□□ -0.18
NUP54-202ENST00000502850 CCDC196A0A1B0GTZ2 297 aa13.91□□□□□ -0.18
NUP54-202ENST00000502850 SPTLC2O15270 562 aa13.91□□□□□ -0.18
NUP54-202ENST00000502850 IGSF3O75054 1194 aa13.91□□□□□ -0.18
NUP54-202ENST00000502850 PCP11498 1178 aaKnown RBP13.91□□□□□ -0.18
NUP54-202ENST00000502850 IARSP41252 1262 aaKnown RBP13.91□□□□□ -0.18
NUP54-202ENST00000502850 KIF23Q02241 960 aaPredicted RBP13.91□□□□□ -0.18
NUP54-202ENST00000502850 GNL2Q13823 731 aaKnown RBP13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms