RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 WDR19Q8NEZ3 1342 aa18.72■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 KIF28PB7ZC32 967 aa18.72■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 YEATS4O95619 227 aa18.72■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 MYSM1Q5VVJ2 828 aa18.72■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 KIF6Q6ZMV9 814 aa18.72■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 C16orf45Q96MC5 204 aaPredicted RBP18.72■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 DENND2AQ9ULE3 1009 aa18.72■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 BECN2A8MW95 431 aa18.71■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 ZNF213O14771 459 aa18.71■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 DHX16O60231 1041 aaKnown RBP18.71■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 GTF2E1P29083 439 aaPredicted RBP18.71■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 CDHR2Q9BYE9 1310 aa18.71■□□□□ 0.59
MSH5-SAPCD1-208ENST00000498473 ADD2P35612 726 aa18.7■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 STK38Q15208 465 aa18.7■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 HLFQ16534 295 aa18.7■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 TXNRD1Q16881 649 aa18.7■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 AOPEPQ8N6M6 819 aa18.7■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 TTLL11Q8NHH1 800 aa18.7■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 ANKRD7Q92527 254 aa18.7■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 MAP3K15Q6ZN16 1313 aa18.7■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 METTL24Q5JXM2 366 aa18.7■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 GIGYF2Q6Y7W6 1299 aaKnown RBP18.7■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 BRAPQ7Z569 592 aa18.7■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 CEP57L1Q8IYX8 460 aa18.7■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 KCNG4Q8TDN1 519 aa18.7■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 GREM2Q9H772 168 aa18.7■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 MYH3P11055 1940 aa18.69■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 SPTLC2O15270 562 aa18.69■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 TNNT1P13805 278 aa18.69■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 KIF23Q02241 960 aaPredicted RBP18.69■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 RALYLQ86SE5 291 aaKnown RBP18.69■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 VGLL2Q8N8G2 317 aa18.69■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 SMARCC1Q92922 1105 aaPredicted RBP18.69■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 ZNF512BQ96KM6 892 aaPredicted RBP18.69■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 TEX13AQ9BXU3 409 aaPredicted RBP18.69■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 LY75O60449 1722 aa18.69■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 ITGA6P23229 1130 aa18.69■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 INTS5Q6P9B9 1019 aaKnown RBP18.69■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 LDHAL6AQ6ZMR3 332 aa18.69■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 NLRP10Q86W26 655 aa18.69■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 SDF4Q9BRK5 362 aa18.69■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 KIAA1468Q9P260 1216 aa18.69■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 TBC1D2BQ9UPU7 963 aa18.69■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 SMTNL1A8MU46 457 aa18.68■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 SF3A1Q15459 793 aaKnown RBP18.68■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 AXDND1Q5T1B0 1012 aaPredicted RBP18.68■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 CYB5R4Q7L1T6 521 aa18.68■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 TBC1D10CQ8IV04 446 aa18.68■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 PIH1D3Q9NQM4 214 aaKnown RBP18.68■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 TAF1LQ8IZX4 1826 aa18.68■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 CPLX1O14810 134 aa18.68■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 NEMFO60524 1076 aa18.68■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 GPTP24298 496 aa18.68■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 CCZ1BP86790 482 aa18.68■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 CCZ1P86791 482 aaPredicted RBP18.68■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 FBXW7Q969H0 707 aa18.68■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.68■□□□□ 0.581e-10■■■□□ 19
MSH5-SAPCD1-208ENST00000498473 ANKRD36CQ5JPF3 1778 aa18.68■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 USP27XA6NNY8 438 aa18.67■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 GNPATO15228 680 aa18.67■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 STARD3NLO95772 234 aa18.67■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 TPD52L1Q16890 204 aaPredicted RBP18.67■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 DPCR1Q3MIW9 517 aa18.67■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 SLC9C2Q5TAH2 1124 aa18.67■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 ANO1Q5XXA6 986 aa18.67■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 NBPF11Q86T75 865 aa18.67■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 NAT10Q9H0A0 1025 aaKnown RBP18.67■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 ECM29Q5VYK3 1845 aa18.67■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 CTSWP56202 376 aa18.66■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 DMTNQ08495 405 aa18.66■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 RGS22Q8NE09 1264 aa18.66■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 IPO4Q8TEX9 1081 aaKnown RBP18.66■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 AIFM3Q96NN9 605 aa18.66■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 BPIFA3Q9BQP9 254 aa18.66■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 ZMYM6O95789 1325 aa18.66■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 CCDC69A6NI79 296 aa18.66■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 SH2B2O14492 632 aaPredicted RBP18.66■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 ANGEL1Q9UNK9 670 aaKnown RBP18.66■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 WDHD1O75717 1129 aaPredicted RBP18.65■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 ZNF202O95125 648 aa18.65■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 SKILP12757 684 aa18.65■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 UBE3CQ15386 1083 aa18.65■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 FILIP1Q7Z7B0 1213 aa18.65■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 SENP2Q9HC62 589 aa18.65■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 COL5A3P25940 1745 aaPredicted RBP18.65■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 ANKRD18BA2A2Z9 1011 aa18.65■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 CMA1P23946 247 aa18.65■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 ZNF827Q17R98 1081 aa18.65■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 SYNE3Q6ZMZ3 975 aa18.65■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 PAXBP1Q9Y5B6 917 aa18.65■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 NUP98P52948 1817 aa18.64■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 MROH7-TTC4A0A0A0MT08 1334 aa18.64■□□□□ 0.58
MSH5-SAPCD1-208ENST00000498473 TCRBV5S4A2TA0A5A2 114 aa18.64■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 PFKFB1P16118 471 aa18.64■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 SLC39A14Q15043 492 aa18.64■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 TTF1Q15361 905 aaPredicted RBP18.64■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 PPP4R3BQ5MIZ7 849 aa18.64■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 NYAP1Q6ZVC0 841 aa18.64■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 CNNM1Q9NRU3 951 aa18.64■□□□□ 0.57
MSH5-SAPCD1-208ENST00000498473 CCDC87Q9NVE4 849 aa18.64■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 93 ms