RNA–Protein interactions for RNA: ENST00000497026.5

CSMD3-208, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 1,406 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-208ENST00000497026 IQSEC2Q5JU85 1478 aa7.19□□□□□ -1.26
CSMD3-208ENST00000497026 HYAL2Q12891 473 aa7.18□□□□□ -1.26
CSMD3-208ENST00000497026 C8orf34Q49A92 452 aa7.18□□□□□ -1.26
CSMD3-208ENST00000497026 NOM1Q5C9Z4 860 aaKnown RBP7.18□□□□□ -1.26
CSMD3-208ENST00000497026 PHLDB3Q6NSJ2 640 aa7.18□□□□□ -1.26
CSMD3-208ENST00000497026 ZNF438Q7Z4V0 828 aa7.18□□□□□ -1.26
CSMD3-208ENST00000497026 GGNBP2Q9H3C7 697 aa7.18□□□□□ -1.26
CSMD3-208ENST00000497026 ABI2Q9NYB9 513 aaPredicted RBP7.18□□□□□ -1.26
CSMD3-208ENST00000497026 CNTN3Q9P232 1028 aa7.18□□□□□ -1.26
CSMD3-208ENST00000497026 KIF1BO60333 1816 aa7.18□□□□□ -1.26
CSMD3-208ENST00000497026 XIRP1Q702N8 1843 aaKnown RBP7.18□□□□□ -1.26
CSMD3-208ENST00000497026 HOXD8P13378 290 aaPredicted RBP7.18□□□□□ -1.26
CSMD3-208ENST00000497026 EIF1AXP47813 144 aaKnown RBP7.18□□□□□ -1.26
CSMD3-208ENST00000497026 IREB2P48200 963 aaKnown RBP7.18□□□□□ -1.26
CSMD3-208ENST00000497026 AAMPQ13685 434 aa7.18□□□□□ -1.26
CSMD3-208ENST00000497026 NKAPLQ5M9Q1 402 aa7.18□□□□□ -1.26
CSMD3-208ENST00000497026 CEP135Q66GS9 1140 aa7.18□□□□□ -1.26
CSMD3-208ENST00000497026 ADAMTSL4Q6UY14 1074 aa7.18□□□□□ -1.26
CSMD3-208ENST00000497026 TXNRD3Q86VQ6 643 aa7.18□□□□□ -1.26
CSMD3-208ENST00000497026 FBXO41Q8TF61 875 aa7.18□□□□□ -1.26
CSMD3-208ENST00000497026 RASSF4Q9H2L5 321 aa7.18□□□□□ -1.26
CSMD3-208ENST00000497026 CPS1P31327 1500 aa7.17□□□□□ -1.26
CSMD3-208ENST00000497026 NRXN3Q9Y4C0 1643 aa7.17□□□□□ -1.26
CSMD3-208ENST00000497026 ABL1P00519 1130 aa7.17□□□□□ -1.26
CSMD3-208ENST00000497026 PDGFAP04085 211 aa7.17□□□□□ -1.26
CSMD3-208ENST00000497026 TXNDC11Q6PKC3 985 aa7.17□□□□□ -1.26
CSMD3-208ENST00000497026 TXNDC2Q86VQ3 553 aa7.17□□□□□ -1.26
CSMD3-208ENST00000497026 KRTAP19-1Q8IUB9 90 aa7.17□□□□□ -1.26
CSMD3-208ENST00000497026 DTWD1Q8N5C7 304 aa7.17□□□□□ -1.26
CSMD3-208ENST00000497026 SPACA7Q96KW9 195 aa7.17□□□□□ -1.26
CSMD3-208ENST00000497026 NEXMIFQ5QGS0 1516 aa7.17□□□□□ -1.26
CSMD3-208ENST00000497026 SETD5Q9C0A6 1442 aa7.16□□□□□ -1.26
CSMD3-208ENST00000497026 RIMS2Q9UQ26 1411 aa7.16□□□□□ -1.26
CSMD3-208ENST00000497026 NWD1Q149M9 1564 aa7.16□□□□□ -1.26
CSMD3-208ENST00000497026 ALKQ9UM73 1620 aa7.16□□□□□ -1.26
CSMD3-208ENST00000497026 RAB3GAP2Q9H2M9 1393 aa7.16□□□□□ -1.26
CSMD3-208ENST00000497026 ACPPP15309 386 aa7.16□□□□□ -1.26
CSMD3-208ENST00000497026 NRG1Q02297 640 aaPredicted RBP7.16□□□□□ -1.26
CSMD3-208ENST00000497026 ZNF211Q13398 564 aaPredicted RBP7.16□□□□□ -1.26
CSMD3-208ENST00000497026 NCAPG2Q86XI2 1143 aa7.16□□□□□ -1.26
CSMD3-208ENST00000497026 C1orf127Q8N9H9 656 aa7.16□□□□□ -1.26
CSMD3-208ENST00000497026 WFDC12Q8WWY7 111 aa7.16□□□□□ -1.26
CSMD3-208ENST00000497026 POLIQ9UNA4 740 aa7.16□□□□□ -1.26
CSMD3-208ENST00000497026 PLEKHG1Q9ULL1 1385 aa7.15□□□□□ -1.26
CSMD3-208ENST00000497026 LRRC7Q96NW7 1537 aa7.15□□□□□ -1.26
CSMD3-208ENST00000497026 LINC01387J3KSC0 135 aa7.15□□□□□ -1.27
CSMD3-208ENST00000497026 DYRK3O43781 588 aa7.15□□□□□ -1.27
CSMD3-208ENST00000497026 TRPA1O75762 1119 aa7.15□□□□□ -1.27
CSMD3-208ENST00000497026 ALX3O95076 343 aa7.15□□□□□ -1.27
CSMD3-208ENST00000497026 NOS3P29474 1203 aa7.15□□□□□ -1.27
CSMD3-208ENST00000497026 SETDB1Q15047 1291 aa7.15□□□□□ -1.27
CSMD3-208ENST00000497026 ADAMTS13Q76LX8 1427 aa7.15□□□□□ -1.27
CSMD3-208ENST00000497026 TP53INP1Q96A56 240 aa7.15□□□□□ -1.27
CSMD3-208ENST00000497026 CHD2O14647 1828 aaKnown RBP7.14□□□□□ -1.27
CSMD3-208ENST00000497026 IFT172Q9UG01 1749 aa7.14□□□□□ -1.27
CSMD3-208ENST00000497026 PPLO60437 1756 aa7.14□□□□□ -1.27
CSMD3-208ENST00000497026 DLL1O00548 723 aa7.14□□□□□ -1.27
CSMD3-208ENST00000497026 PCSK2P16519 638 aa7.14□□□□□ -1.27
CSMD3-208ENST00000497026 MZF1P28698 734 aaPredicted RBP7.14□□□□□ -1.27
CSMD3-208ENST00000497026 PDE12Q6L8Q7 609 aaKnown RBP7.14□□□□□ -1.27
CSMD3-208ENST00000497026 IGF2-ASQ6U949 168 aa7.14□□□□□ -1.27
CSMD3-208ENST00000497026 TTC16Q8NEE8 873 aa7.14□□□□□ -1.27
CSMD3-208ENST00000497026 SH2B1Q9NRF2 756 aaPredicted RBP7.14□□□□□ -1.27
CSMD3-208ENST00000497026 EID1Q9Y6B2 187 aa7.14□□□□□ -1.27
CSMD3-208ENST00000497026 SETD1AO15047 1707 aaKnown RBP7.14□□□□□ -1.27
CSMD3-208ENST00000497026 DIP2AQ14689 1571 aa7.13□□□□□ -1.27
CSMD3-208ENST00000497026 SETBP1Q9Y6X0 1596 aa7.13□□□□□ -1.27
CSMD3-208ENST00000497026 SMNDC1O75940 238 aaKnown RBP eCLIP7.13□□□□□ -1.27
CSMD3-208ENST00000497026 KIF4AO95239 1232 aa7.13□□□□□ -1.27
CSMD3-208ENST00000497026 CEP120Q8N960 986 aa7.13□□□□□ -1.27
CSMD3-208ENST00000497026 SLC26A8Q96RN1 970 aa7.13□□□□□ -1.27
CSMD3-208ENST00000497026 MPHOSPH9Q99550 1183 aa7.13□□□□□ -1.27
CSMD3-208ENST00000497026 CARD10Q9BWT7 1032 aa7.13□□□□□ -1.27
CSMD3-208ENST00000497026 PPME1Q9Y570 386 aa7.13□□□□□ -1.27
CSMD3-208ENST00000497026 CENPBP07199 599 aaPredicted RBP7.12□□□□□ -1.27
CSMD3-208ENST00000497026 CES1P23141 567 aa7.12□□□□□ -1.27
CSMD3-208ENST00000497026 CDC27P30260 824 aa7.12□□□□□ -1.27
CSMD3-208ENST00000497026 GALNT11Q8NCW6 608 aa7.12□□□□□ -1.27
CSMD3-208ENST00000497026 MEGF10Q96KG7 1140 aa7.12□□□□□ -1.27
CSMD3-208ENST00000497026 PBX4Q9BYU1 374 aa7.12□□□□□ -1.27
CSMD3-208ENST00000497026 CCDC87Q9NVE4 849 aa7.12□□□□□ -1.27
CSMD3-208ENST00000497026 XRN1Q8IZH2 1706 aaKnown RBP7.12□□□□□ -1.27
CSMD3-208ENST00000497026 NKTRP30414 1462 aaKnown RBP7.12□□□□□ -1.27
CSMD3-208ENST00000497026 PRSS36Q5K4E3 855 aa7.11□□□□□ -1.27
CSMD3-208ENST00000497026 AGGF1Q8N302 714 aaeCLIP7.11□□□□□ -1.27
CSMD3-208ENST00000497026 HHIPQ96QV1 700 aa7.11□□□□□ -1.27
CSMD3-208ENST00000497026 POP1Q99575 1024 aaKnown RBP7.11□□□□□ -1.27
CSMD3-208ENST00000497026 SSBP4Q9BWG4 385 aaPredicted RBP7.11□□□□□ -1.27
CSMD3-208ENST00000497026 CCDC144AA2RUR9 1427 aa7.11□□□□□ -1.27
CSMD3-208ENST00000497026 SPATA31E1Q6ZUB1 1445 aa7.11□□□□□ -1.27
CSMD3-208ENST00000497026 RPLP1P05386 114 aaKnown RBP7.1□□□□□ -1.27
CSMD3-208ENST00000497026 EPHA1P21709 976 aa7.1□□□□□ -1.27
CSMD3-208ENST00000497026 FKBP4Q02790 459 aaKnown RBP eCLIP7.1□□□□□ -1.27
CSMD3-208ENST00000497026 FOXD4L6Q3SYB3 417 aaPredicted RBP7.1□□□□□ -1.27
CSMD3-208ENST00000497026 ALKBH2Q6NS38 261 aa7.1□□□□□ -1.27
CSMD3-208ENST00000497026 FOXD4L3Q6VB84 417 aaPredicted RBP7.1□□□□□ -1.27
CSMD3-208ENST00000497026 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.1□□□□□ -1.27
CSMD3-208ENST00000497026 CHRDQ9H2X0 955 aa7.1□□□□□ -1.27
CSMD3-208ENST00000497026 AKTIPQ9H8T0 292 aa7.1□□□□□ -1.27
CSMD3-208ENST00000497026 KCNK4Q9NYG8 393 aa7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms