RNA–Protein interactions for RNA: ENST00000496622.1

SSBP1-213, Transcript of single stranded DNA binding protein 1, humanhuman

TSL 1 (best)

Gene SSBP1, Length 2,620 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP1-213ENST00000496622 ABCC6O95255 1503 aa7.37□□□□□ -1.23
SSBP1-213ENST00000496622 HCLS1P14317 486 aaPredicted RBP7.36□□□□□ -1.23
SSBP1-213ENST00000496622 RSBN1LQ6PCB5 846 aaPredicted RBP7.36□□□□□ -1.23
SSBP1-213ENST00000496622 BICDL1Q6ZP65 573 aa7.36□□□□□ -1.23
SSBP1-213ENST00000496622 EMID1Q96A84 441 aaPredicted RBP7.36□□□□□ -1.23
SSBP1-213ENST00000496622 FAM227BQ96M60 508 aa7.36□□□□□ -1.23
SSBP1-213ENST00000496622 ESYT1Q9BSJ8 1104 aa7.36□□□□□ -1.23
SSBP1-213ENST00000496622 ECHDC1Q9NTX5 307 aa7.36□□□□□ -1.23
SSBP1-213ENST00000496622 UBN2Q6ZU65 1347 aa7.36□□□□□ -1.23
SSBP1-213ENST00000496622 TOGARAM1Q9Y4F4 1720 aa7.36□□□□□ -1.23
SSBP1-213ENST00000496622 ERC2O15083 957 aa7.36□□□□□ -1.23
SSBP1-213ENST00000496622 NFKBIBQ15653 356 aa7.36□□□□□ -1.23
SSBP1-213ENST00000496622 RABL6Q3YEC7 729 aaPredicted RBP7.36□□□□□ -1.23
SSBP1-213ENST00000496622 CASC1Q6TDU7 716 aa7.36□□□□□ -1.23
SSBP1-213ENST00000496622 KIF6Q6ZMV9 814 aa7.36□□□□□ -1.23
SSBP1-213ENST00000496622 TSHZ1Q6ZSZ6 1077 aa7.36□□□□□ -1.23
SSBP1-213ENST00000496622 CCDC191Q8NCU4 936 aa7.36□□□□□ -1.23
SSBP1-213ENST00000496622 TSC1Q92574 1164 aa7.36□□□□□ -1.23
SSBP1-213ENST00000496622 TRMT112Q9UI30 125 aaKnown RBP7.36□□□□□ -1.23
SSBP1-213ENST00000496622 TNS1Q9HBL0 1735 aaKnown RBP7.36□□□□□ -1.23
SSBP1-213ENST00000496622 CEP350Q5VT06 3117 aa7.35□□□□□ -1.23
SSBP1-213ENST00000496622 LETM1O95202 739 aaPredicted RBP7.35□□□□□ -1.23
SSBP1-213ENST00000496622 ADH1BP00325 375 aa7.35□□□□□ -1.23
SSBP1-213ENST00000496622 CPA1P15085 419 aa7.35□□□□□ -1.23
SSBP1-213ENST00000496622 BECN1Q14457 450 aa7.35□□□□□ -1.23
SSBP1-213ENST00000496622 ATG9AQ7Z3C6 839 aa7.35□□□□□ -1.23
SSBP1-213ENST00000496622 NLRP10Q86W26 655 aa7.35□□□□□ -1.23
SSBP1-213ENST00000496622 ISCA1Q9BUE6 129 aa7.35□□□□□ -1.23
SSBP1-213ENST00000496622 GREM2Q9H772 168 aa7.35□□□□□ -1.23
SSBP1-213ENST00000496622 MAP3K15Q6ZN16 1313 aa7.35□□□□□ -1.23
SSBP1-213ENST00000496622 TNNI3KQ59H18 835 aa7.35□□□□□ -1.23
SSBP1-213ENST00000496622 DDX46Q7L014 1031 aaKnown RBP7.35□□□□□ -1.23
SSBP1-213ENST00000496622 HELBQ8NG08 1087 aaPredicted RBP7.35□□□□□ -1.23
SSBP1-213ENST00000496622 GJD4Q96KN9 370 aaPredicted RBP7.35□□□□□ -1.23
SSBP1-213ENST00000496622 ANTXR1Q9H6X2 564 aa7.35□□□□□ -1.23
SSBP1-213ENST00000496622 COPRSQ9NQ92 184 aa7.35□□□□□ -1.23
SSBP1-213ENST00000496622 THRAP3Q9Y2W1 955 aaKnown RBP7.35□□□□□ -1.23
SSBP1-213ENST00000496622 FCF1Q9Y324 198 aaKnown RBP7.35□□□□□ -1.23
SSBP1-213ENST00000496622 FPGT-TNNI3KV9GXZ4 949 aa7.35□□□□□ -1.23
SSBP1-213ENST00000496622 THSD7AQ9UPZ6 1657 aa7.35□□□□□ -1.23
SSBP1-213ENST00000496622 PALLDQ8WX93 1383 aa7.35□□□□□ -1.23
SSBP1-213ENST00000496622 WTIPA6NIX2 430 aaPredicted RBP7.34□□□□□ -1.23
SSBP1-213ENST00000496622 SPTY2D1Q68D10 685 aaPredicted RBP7.34□□□□□ -1.23
SSBP1-213ENST00000496622 PI16Q6UXB8 463 aa7.34□□□□□ -1.23
SSBP1-213ENST00000496622 BORCS6Q96GS4 357 aa7.34□□□□□ -1.23
SSBP1-213ENST00000496622 SEC62Q99442 399 aaKnown RBP7.34□□□□□ -1.23
SSBP1-213ENST00000496622 SLC6A16Q9GZN6 736 aa7.34□□□□□ -1.23
SSBP1-213ENST00000496622 SNRKQ9NRH2 765 aa7.34□□□□□ -1.23
SSBP1-213ENST00000496622 CGNQ9P2M7 1197 aaKnown RBP7.34□□□□□ -1.23
SSBP1-213ENST00000496622 ERBB4Q15303 1308 aa7.34□□□□□ -1.23
SSBP1-213ENST00000496622 NUP188Q5SRE5 1749 aa7.34□□□□□ -1.23
SSBP1-213ENST00000496622 PARP4Q9UKK3 1724 aaKnown RBP7.34□□□□□ -1.23
SSBP1-213ENST00000496622 GLRX3O76003 335 aaKnown RBP7.34□□□□□ -1.23
SSBP1-213ENST00000496622 EIF5P55010 431 aaKnown RBP7.34□□□□□ -1.23
SSBP1-213ENST00000496622 PTH1RQ03431 593 aa7.34□□□□□ -1.23
SSBP1-213ENST00000496622 VPS72Q15906 364 aa7.34□□□□□ -1.23
SSBP1-213ENST00000496622 CCDC57Q2TAC2 916 aa7.34□□□□□ -1.23
SSBP1-213ENST00000496622 SUSD4Q5VX71 490 aa7.34□□□□□ -1.23
SSBP1-213ENST00000496622 HSCBQ8IWL3 235 aa7.34□□□□□ -1.23
SSBP1-213ENST00000496622 LINC00116Q8NCU8 138 aa7.34□□□□□ -1.23
SSBP1-213ENST00000496622 USB1Q9BQ65 265 aaKnown RBP7.34□□□□□ -1.23
SSBP1-213ENST00000496622 TEX13AQ9BXU3 409 aaPredicted RBP7.34□□□□□ -1.23
SSBP1-213ENST00000496622 TAF6LQ9Y6J9 622 aa7.34□□□□□ -1.23
SSBP1-213ENST00000496622 RGPD3A6NKT7 1758 aaPredicted RBP7.34□□□□□ -1.23
SSBP1-213ENST00000496622 RGPD4Q7Z3J3 1758 aa7.34□□□□□ -1.23
SSBP1-213ENST00000496622 CFAP99D6REC4 459 aa7.33□□□□□ -1.24
SSBP1-213ENST00000496622 IRS4O14654 1257 aaPredicted RBP7.33□□□□□ -1.24
SSBP1-213ENST00000496622 REC8O95072 547 aa7.33□□□□□ -1.24
SSBP1-213ENST00000496622 FMNL1O95466 1100 aaPredicted RBP7.33□□□□□ -1.24
SSBP1-213ENST00000496622 NEK4P51957 841 aa7.33□□□□□ -1.24
SSBP1-213ENST00000496622 SATB1Q01826 763 aa7.33□□□□□ -1.24
SSBP1-213ENST00000496622 SLC51AQ86UW1 340 aa7.33□□□□□ -1.24
SSBP1-213ENST00000496622 ZBTB38Q8NAP3 1195 aaPredicted RBP7.33□□□□□ -1.24
SSBP1-213ENST00000496622 CHAMP1Q96JM3 812 aa7.33□□□□□ -1.24
SSBP1-213ENST00000496622 SEC31BQ9NQW1 1179 aa7.33□□□□□ -1.24
SSBP1-213ENST00000496622 CCDC87Q9NVE4 849 aa7.33□□□□□ -1.24
SSBP1-213ENST00000496622 CASZ1Q86V15 1759 aa7.33□□□□□ -1.24
SSBP1-213ENST00000496622 CACNA1FO60840 1977 aa7.33□□□□□ -1.24
SSBP1-213ENST00000496622 A0A0D9SFI3 127 aa7.33□□□□□ -1.24
SSBP1-213ENST00000496622 ITGA6P23229 1130 aa7.33□□□□□ -1.24
SSBP1-213ENST00000496622 ADORA1P30542 326 aa7.33□□□□□ -1.24
SSBP1-213ENST00000496622 USP46P62068 366 aa7.33□□□□□ -1.24
SSBP1-213ENST00000496622 PKP1Q13835 747 aa7.33□□□□□ -1.24
SSBP1-213ENST00000496622 CCDC129Q6ZRS4 1044 aa7.33□□□□□ -1.24
SSBP1-213ENST00000496622 CNTROBQ8N137 903 aa7.33□□□□□ -1.24
SSBP1-213ENST00000496622 TTLL11Q8NHH1 800 aa7.33□□□□□ -1.24
SSBP1-213ENST00000496622 CDCA7Q9BWT1 371 aaPredicted RBP7.33□□□□□ -1.24
SSBP1-213ENST00000496622 GTPBP4Q9BZE4 634 aaKnown RBP7.33□□□□□ -1.24
SSBP1-213ENST00000496622 SRP68Q9UHB9 627 aaKnown RBP7.33□□□□□ -1.24
SSBP1-213ENST00000496622 A0A1B0GUL7 405 aa7.32□□□□□ -1.24
SSBP1-213ENST00000496622 IL6STP40189 918 aaPredicted RBP7.32□□□□□ -1.24
SSBP1-213ENST00000496622 ZNF589Q86UQ0 364 aaPredicted RBP7.32□□□□□ -1.24
SSBP1-213ENST00000496622 ERC1Q8IUD2 1116 aa7.32□□□□□ -1.24
SSBP1-213ENST00000496622 ZGPATQ8N5A5 531 aaKnown RBP7.32□□□□□ -1.24
SSBP1-213ENST00000496622 SYT17Q9BSW7 474 aa7.32□□□□□ -1.24
SSBP1-213ENST00000496622 FSD1Q9BTV5 496 aa7.32□□□□□ -1.24
SSBP1-213ENST00000496622 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.32□□□□□ -1.24
SSBP1-213ENST00000496622 DIAPH3Q9NSV4 1193 aa7.32□□□□□ -1.24
SSBP1-213ENST00000496622 NIP7Q9Y221 180 aaKnown RBP eCLIP7.32□□□□□ -1.24
SSBP1-213ENST00000496622 RIPOR2Q9Y4F9 1068 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms