RNA–Protein interactions for RNA: ENST00000493919.5

BRCA1-222, Transcript of BRCA1, DNA repair associated, human

TSL 2

Gene BRCA1, Length 1,948 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRCA1-222	ENST00000493919	ATP8B2	P98198	1209 aa		13.64	□□□□□ -0.23
BRCA1-222	ENST00000493919	ATG9A	Q7Z3C6	839 aa		13.64	□□□□□ -0.23
BRCA1-222	ENST00000493919	VPS33B	Q9H267	617 aa		13.64	□□□□□ -0.23
BRCA1-222	ENST00000493919	TESPA1	A2RU30	521 aa	Predicted RBP	13.64	□□□□□ -0.23
BRCA1-222	ENST00000493919	ECE2	O60344	883 aa		13.64	□□□□□ -0.23
BRCA1-222	ENST00000493919	CIAO1	O76071	339 aa		13.64	□□□□□ -0.23
BRCA1-222	ENST00000493919	SSH3	Q8TE77	659 aa		13.64	□□□□□ -0.23
BRCA1-222	ENST00000493919	GJA3	Q9Y6H8	435 aa		13.64	□□□□□ -0.23
BRCA1-222	ENST00000493919	IL15	P40933	162 aa	Predicted RBP	13.63	□□□□□ -0.23
BRCA1-222	ENST00000493919	POLA2	Q14181	598 aa		13.63	□□□□□ -0.23
BRCA1-222	ENST00000493919	DPY19L2	Q6NUT2	758 aa		13.63	□□□□□ -0.23
BRCA1-222	ENST00000493919	TXNRD3	Q86VQ6	643 aa		13.63	□□□□□ -0.23
BRCA1-222	ENST00000493919	VGLL2	Q8N8G2	317 aa		13.63	□□□□□ -0.23
BRCA1-222	ENST00000493919	ATL2	Q8NHH9	583 aa		13.63	□□□□□ -0.23
BRCA1-222	ENST00000493919	ZNRF3	Q9ULT6	936 aa		13.63	□□□□□ -0.23
BRCA1-222	ENST00000493919	KDM2B	Q8NHM5	1336 aa		13.63	□□□□□ -0.23
BRCA1-222	ENST00000493919	ANKRD33B	A6NCL7	494 aa		13.62	□□□□□ -0.23
BRCA1-222	ENST00000493919	HMMR	O75330	724 aa		13.62	□□□□□ -0.23
BRCA1-222	ENST00000493919	SURF6	O75683	361 aa	Known RBP	13.62	□□□□□ -0.23
BRCA1-222	ENST00000493919	RAD17	O75943	681 aa		13.62	□□□□□ -0.23
BRCA1-222	ENST00000493919	DDN	O94850	711 aa	Predicted RBP	13.62	□□□□□ -0.23
BRCA1-222	ENST00000493919	PDE8B	O95263	885 aa		13.62	□□□□□ -0.23
BRCA1-222	ENST00000493919	FOXD4	Q12950	439 aa	Predicted RBP	13.62	□□□□□ -0.23
BRCA1-222	ENST00000493919	G3BP1	Q13283	466 aa	Known RBP eCLIP	13.62	□□□□□ -0.23
BRCA1-222	ENST00000493919	CCDC91	Q7Z6B0	441 aa		13.62	□□□□□ -0.23
BRCA1-222	ENST00000493919	ZNF784	Q8NCA9	323 aa	Predicted RBP	13.62	□□□□□ -0.23
BRCA1-222	ENST00000493919	RANBP17	Q9H2T7	1088 aa	Known RBP	13.62	□□□□□ -0.23
BRCA1-222	ENST00000493919	GPBP1L1	Q9HC44	474 aa	Predicted RBP	13.62	□□□□□ -0.23
BRCA1-222	ENST00000493919	SYNPO2	Q9UMS6	1093 aa		13.62	□□□□□ -0.23
BRCA1-222	ENST00000493919	YDJC	A8MPS7	323 aa		13.62	□□□□□ -0.23
BRCA1-222	ENST00000493919	FZD9	O00144	591 aa		13.62	□□□□□ -0.23
BRCA1-222	ENST00000493919	UBE4A	Q14139	1066 aa		13.62	□□□□□ -0.23
BRCA1-222	ENST00000493919	PUM3	Q15397	648 aa	Known RBP	13.62	□□□□□ -0.23
BRCA1-222	ENST00000493919	CCDC181	Q5TID7	509 aa		13.62	□□□□□ -0.23
BRCA1-222	ENST00000493919	GET4	Q7L5D6	327 aa	Predicted RBP	13.62	□□□□□ -0.23
BRCA1-222	ENST00000493919	RPAP2	Q8IXW5	612 aa	Predicted RBP	13.62	□□□□□ -0.23
BRCA1-222	ENST00000493919	TBC1D22A	Q8WUA7	517 aa		13.62	□□□□□ -0.23
BRCA1-222	ENST00000493919	FBXW7	Q969H0	707 aa		13.62	□□□□□ -0.23
BRCA1-222	ENST00000493919	GLTPD2	A6NH11	291 aa		13.61	□□□□□ -0.23
BRCA1-222	ENST00000493919	TMCO4	Q5TGY1	634 aa		13.61	□□□□□ -0.23
BRCA1-222	ENST00000493919	ZNF804A	Q7Z570	1209 aa		13.61	□□□□□ -0.23
BRCA1-222	ENST00000493919	CXorf56	Q9H5V9	222 aa		13.61	□□□□□ -0.23
BRCA1-222	ENST00000493919	EXOC6B	Q9Y2D4	811 aa		13.61	□□□□□ -0.23
BRCA1-222	ENST00000493919	DDX49	Q9Y6V7	483 aa	Known RBP	13.61	□□□□□ -0.23
BRCA1-222	ENST00000493919	SCN9A	Q15858	1988 aa		13.61	□□□□□ -0.23
BRCA1-222	ENST00000493919		H0YHG0	523 aa		13.6	□□□□□ -0.23
BRCA1-222	ENST00000493919	GYG1	P46976	350 aa		13.6	□□□□□ -0.23
BRCA1-222	ENST00000493919	CCT2	P78371	535 aa	Known RBP	13.6	□□□□□ -0.23
BRCA1-222	ENST00000493919	SARNP	P82979	210 aa	Known RBP	13.6	□□□□□ -0.23
BRCA1-222	ENST00000493919	TFCP2	Q12800	502 aa		13.6	□□□□□ -0.23
BRCA1-222	ENST00000493919	BECN1	Q14457	450 aa		13.6	□□□□□ -0.23
BRCA1-222	ENST00000493919	ATP2B3	Q16720	1220 aa		13.6	□□□□□ -0.23
BRCA1-222	ENST00000493919	CIAPIN1	Q6FI81	312 aa		13.6	□□□□□ -0.23
BRCA1-222	ENST00000493919	LARP6	Q9BRS8	491 aa	Known RBP	13.6	□□□□□ -0.23
BRCA1-222	ENST00000493919	NOL10	Q9BSC4	688 aa	Known RBP	13.6	□□□□□ -0.23
BRCA1-222	ENST00000493919	HMGB1P1	B2RPK0	211 aa	Predicted RBP	13.6	□□□□□ -0.23
BRCA1-222	ENST00000493919	APBB1	O00213	710 aa		13.6	□□□□□ -0.23
BRCA1-222	ENST00000493919	IFIT1	P09914	478 aa	Known RBP	13.6	□□□□□ -0.23
BRCA1-222	ENST00000493919	SLC5A1	P13866	664 aa		13.6	□□□□□ -0.23
BRCA1-222	ENST00000493919	CXCL9	Q07325	125 aa		13.6	□□□□□ -0.23
BRCA1-222	ENST00000493919	VPS37D	Q86XT2	251 aa		13.6	□□□□□ -0.23
BRCA1-222	ENST00000493919	SIRT2	Q8IXJ6	389 aa		13.6	□□□□□ -0.23
BRCA1-222	ENST00000493919	CACTIN-AS1	Q8N1I8	211 aa		13.6	□□□□□ -0.23
BRCA1-222	ENST00000493919	EXOC6	Q8TAG9	804 aa		13.6	□□□□□ -0.23
BRCA1-222	ENST00000493919	PIK3R5	Q8WYR1	880 aa		13.6	□□□□□ -0.23
BRCA1-222	ENST00000493919	NMRK2	Q9NPI5	230 aa		13.6	□□□□□ -0.23
BRCA1-222	ENST00000493919	KCNQ5	Q9NR82	932 aa		13.6	□□□□□ -0.23
BRCA1-222	ENST00000493919	RSPH14	Q9UHP6	348 aa		13.6	□□□□□ -0.23
BRCA1-222	ENST00000493919	CCDC173	Q0VFZ6	552 aa		13.59	□□□□□ -0.23
BRCA1-222	ENST00000493919	WDR78	Q5VTH9	848 aa		13.59	□□□□□ -0.23
BRCA1-222	ENST00000493919	GPC2	Q8N158	579 aa		13.59	□□□□□ -0.23
BRCA1-222	ENST00000493919	LPIN2	Q92539	896 aa		13.59	□□□□□ -0.23
BRCA1-222	ENST00000493919	PANK2	Q9BZ23	570 aa		13.59	□□□□□ -0.23
BRCA1-222	ENST00000493919	COA1	Q9GZY4	146 aa		13.59	□□□□□ -0.23
BRCA1-222	ENST00000493919	RASSF4	Q9H2L5	321 aa		13.59	□□□□□ -0.23
BRCA1-222	ENST00000493919	ZNF609	O15014	1411 aa		13.59	□□□□□ -0.23
BRCA1-222	ENST00000493919	IRS2	Q9Y4H2	1338 aa		13.59	□□□□□ -0.23
BRCA1-222	ENST00000493919	ARAP2	Q8WZ64	1704 aa		13.59	□□□□□ -0.23
BRCA1-222	ENST00000493919	PSMD14	O00487	310 aa		13.58	□□□□□ -0.23
BRCA1-222	ENST00000493919	ABCD1	P33897	745 aa		13.58	□□□□□ -0.23
BRCA1-222	ENST00000493919	GSC	P56915	257 aa	Predicted RBP	13.58	□□□□□ -0.23
BRCA1-222	ENST00000493919	CAVIN4	Q5BKX8	364 aa		13.58	□□□□□ -0.23
BRCA1-222	ENST00000493919	ANKRD13A	Q8IZ07	590 aa		13.58	□□□□□ -0.23
BRCA1-222	ENST00000493919	UPF2	Q9HAU5	1272 aa	Known RBP	13.58	□□□□□ -0.23
BRCA1-222	ENST00000493919	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	13.58	□□□□□ -0.23
BRCA1-222	ENST00000493919	WDR90	Q96KV7	1748 aa		13.58	□□□□□ -0.24
BRCA1-222	ENST00000493919	SASH1	O94885	1247 aa		13.58	□□□□□ -0.24
BRCA1-222	ENST00000493919	SETSIP	P0DME0	302 aa		13.58	□□□□□ -0.24
BRCA1-222	ENST00000493919	FGFR2	P21802	821 aa		13.58	□□□□□ -0.24
BRCA1-222	ENST00000493919	HIBADH	P31937	336 aa	Known RBP	13.58	□□□□□ -0.24
BRCA1-222	ENST00000493919	MCM5	P33992	734 aa		13.58	□□□□□ -0.24
BRCA1-222	ENST00000493919	TNIP1	Q15025	636 aa		13.58	□□□□□ -0.24
BRCA1-222	ENST00000493919	PODN	Q7Z5L7	613 aa		13.58	□□□□□ -0.24
BRCA1-222	ENST00000493919	GRPEL1	Q9HAV7	217 aa		13.58	□□□□□ -0.24
BRCA1-222	ENST00000493919	RRAGC	Q9HB90	399 aa		13.58	□□□□□ -0.24
BRCA1-222	ENST00000493919	CD209	Q9NNX6	404 aa		13.58	□□□□□ -0.24
BRCA1-222	ENST00000493919	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	13.58	□□□□□ -0.24
BRCA1-222	ENST00000493919	JAG2	Q9Y219	1238 aa		13.58	□□□□□ -0.24
BRCA1-222	ENST00000493919	PSME4	Q14997	1843 aa		13.58	□□□□□ -0.24
BRCA1-222	ENST00000493919		A0A1B0GUL7	405 aa		13.57	□□□□□ -0.24

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