RNA–Protein interactions for RNA: ENST00000492996.6

HERC4-211, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best) BASIC

Gene HERC4, Length 3,385 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-211ENST00000492996 CCDC83Q8IWF9 413 aa8.35□□□□□ -1.07
HERC4-211ENST00000492996 SYTL4Q96C24 671 aaPredicted RBP8.35□□□□□ -1.07
HERC4-211ENST00000492996 CDC5LQ99459 802 aaKnown RBP8.35□□□□□ -1.07
HERC4-211ENST00000492996 COPRSQ9NQ92 184 aa8.35□□□□□ -1.07
HERC4-211ENST00000492996 ZNF112Q9UJU3 913 aa8.35□□□□□ -1.07
HERC4-211ENST00000492996 TAF6LQ9Y6J9 622 aa8.35□□□□□ -1.07
HERC4-211ENST00000492996 FPGT-TNNI3KV9GXZ4 949 aa8.35□□□□□ -1.07
HERC4-211ENST00000492996 BRD1O95696 1058 aa8.35□□□□□ -1.07
HERC4-211ENST00000492996 TIMM10P62072 90 aa8.35□□□□□ -1.07
HERC4-211ENST00000492996 SLFNL1Q499Z3 407 aa8.35□□□□□ -1.07
HERC4-211ENST00000492996 STRIP1Q5VSL9 837 aa8.35□□□□□ -1.07
HERC4-211ENST00000492996 ZNF589Q86UQ0 364 aaPredicted RBP8.35□□□□□ -1.07
HERC4-211ENST00000492996 NECAB1Q8N987 351 aa8.35□□□□□ -1.07
HERC4-211ENST00000492996 GPT2Q8TD30 523 aa8.35□□□□□ -1.07
HERC4-211ENST00000492996 TTC14Q96N46 770 aa8.35□□□□□ -1.07
HERC4-211ENST00000492996 PDRG1Q9NUG6 133 aa8.35□□□□□ -1.07
HERC4-211ENST00000492996 CWC25Q9NXE8 425 aaPredicted RBP8.35□□□□□ -1.07
HERC4-211ENST00000492996 LIMCH1Q9UPQ0 1083 aa8.35□□□□□ -1.07
HERC4-211ENST00000492996 VGLL3A8MV65 326 aa8.35□□□□□ -1.07
HERC4-211ENST00000492996 ZKSCAN1P17029 563 aaPredicted RBP8.35□□□□□ -1.07
HERC4-211ENST00000492996 ERFEQ4G0M1 354 aa8.35□□□□□ -1.07
HERC4-211ENST00000492996 CREB3L3Q68CJ9 461 aa8.35□□□□□ -1.07
HERC4-211ENST00000492996 CCDC129Q6ZRS4 1044 aa8.35□□□□□ -1.07
HERC4-211ENST00000492996 TRIM44Q96DX7 344 aaPredicted RBP8.35□□□□□ -1.07
HERC4-211ENST00000492996 INTS4Q96HW7 963 aaKnown RBP8.35□□□□□ -1.07
HERC4-211ENST00000492996 SEC62Q99442 399 aaKnown RBP8.35□□□□□ -1.07
HERC4-211ENST00000492996 TPM2P07951 284 aa8.34□□□□□ -1.07
HERC4-211ENST00000492996 ZBTB48P10074 688 aaPredicted RBP8.34□□□□□ -1.07
HERC4-211ENST00000492996 IPO4Q8TEX9 1081 aaKnown RBP8.34□□□□□ -1.07
HERC4-211ENST00000492996 CCDC102AQ96A19 550 aa8.34□□□□□ -1.07
HERC4-211ENST00000492996 CYP46A1Q9Y6A2 500 aa8.34□□□□□ -1.07
HERC4-211ENST00000492996 CDK11BP21127 795 aaKnown RBP8.34□□□□□ -1.07
HERC4-211ENST00000492996 LRRC24Q50LG9 513 aa8.34□□□□□ -1.07
HERC4-211ENST00000492996 VGLL2Q8N8G2 317 aa8.34□□□□□ -1.07
HERC4-211ENST00000492996 ANP32BQ92688 251 aaKnown RBP8.34□□□□□ -1.07
HERC4-211ENST00000492996 FAM163AQ96GL9 167 aaPredicted RBP8.34□□□□□ -1.07
HERC4-211ENST00000492996 SMC3Q9UQE7 1217 aa8.34□□□□□ -1.07
HERC4-211ENST00000492996 CHRNA5P30532 468 aa8.33□□□□□ -1.08
HERC4-211ENST00000492996 FOXO4P98177 505 aa8.33□□□□□ -1.08
HERC4-211ENST00000492996 RASSF7Q02833 373 aa8.33□□□□□ -1.08
HERC4-211ENST00000492996 NECTIN1Q15223 517 aa8.33□□□□□ -1.08
HERC4-211ENST00000492996 ZSCAN23Q3MJ62 389 aa8.33□□□□□ -1.08
HERC4-211ENST00000492996 NBPF5PQ86XG9 351 aaPredicted RBP8.33□□□□□ -1.08
HERC4-211ENST00000492996 ALPK3Q96L96 1907 aa8.33□□□□□ -1.08
HERC4-211ENST00000492996 FAM43BQ6ZT52 329 aaPredicted RBP8.33□□□□□ -1.08
HERC4-211ENST00000492996 PUS3Q9BZE2 481 aaKnown RBP8.33□□□□□ -1.08
HERC4-211ENST00000492996 SLC27A2O14975 620 aa8.33□□□□□ -1.08
HERC4-211ENST00000492996 EPB41L2O43491 1005 aaKnown RBP8.33□□□□□ -1.08
HERC4-211ENST00000492996 GPTP24298 496 aa8.33□□□□□ -1.08
HERC4-211ENST00000492996 NT5C2P49902 561 aa8.33□□□□□ -1.08
HERC4-211ENST00000492996 GPR153Q6NV75 609 aa8.33□□□□□ -1.08
HERC4-211ENST00000492996 MAP4K1Q92918 833 aa8.33□□□□□ -1.08
HERC4-211ENST00000492996 FAM89AQ96GI7 184 aa8.33□□□□□ -1.08
HERC4-211ENST00000492996 NLRP3Q96P20 1036 aa8.33□□□□□ -1.08
HERC4-211ENST00000492996 TMEM63CQ9P1W3 806 aa8.33□□□□□ -1.08
HERC4-211ENST00000492996 SYCE3A1L190 88 aa8.32□□□□□ -1.08
HERC4-211ENST00000492996 HIP1O00291 1037 aa8.32□□□□□ -1.08
HERC4-211ENST00000492996 GOLIM4O00461 696 aa8.32□□□□□ -1.08
HERC4-211ENST00000492996 STK3Q13188 491 aa8.32□□□□□ -1.08
HERC4-211ENST00000492996 IRF5Q13568 498 aa8.32□□□□□ -1.08
HERC4-211ENST00000492996 MSL1Q68DK7 614 aa8.32□□□□□ -1.08
HERC4-211ENST00000492996 NMRK2Q9NPI5 230 aa8.32□□□□□ -1.08
HERC4-211ENST00000492996 GPR108Q9NPR9 543 aa8.32□□□□□ -1.08
HERC4-211ENST00000492996 WDR33Q9C0J8 1336 aaKnown RBP8.32□□□□□ -1.08
HERC4-211ENST00000492996 YDJCA8MPS7 323 aa8.32□□□□□ -1.08
HERC4-211ENST00000492996 GADD45BO75293 160 aaPredicted RBP8.32□□□□□ -1.08
HERC4-211ENST00000492996 ATP5JP18859 108 aa8.32□□□□□ -1.08
HERC4-211ENST00000492996 SYT1P21579 422 aa8.32□□□□□ -1.08
HERC4-211ENST00000492996 FGFR2P21802 821 aa8.32□□□□□ -1.08
HERC4-211ENST00000492996 NASPP49321 788 aaPredicted RBP8.32□□□□□ -1.08
HERC4-211ENST00000492996 ARHGAP27Q6ZUM4 889 aa8.32□□□□□ -1.08
HERC4-211ENST00000492996 IL17RAQ96F46 866 aa8.32□□□□□ -1.08
HERC4-211ENST00000492996 A0A1W2PPC1 479 aa8.31□□□□□ -1.08
HERC4-211ENST00000492996 VPS37CA5D8V6 355 aaPredicted RBP8.31□□□□□ -1.08
HERC4-211ENST00000492996 GJB2P29033 226 aa8.31□□□□□ -1.08
HERC4-211ENST00000492996 ME3Q16798 604 aa8.31□□□□□ -1.08
HERC4-211ENST00000492996 RSBN1LQ6PCB5 846 aaPredicted RBP8.31□□□□□ -1.08
HERC4-211ENST00000492996 ATG9AQ7Z3C6 839 aa8.31□□□□□ -1.08
HERC4-211ENST00000492996 RRAGCQ9HB90 399 aa8.31□□□□□ -1.08
HERC4-211ENST00000492996 ZSWIM6Q9HCJ5 1215 aa8.31□□□□□ -1.08
HERC4-211ENST00000492996 SNRKQ9NRH2 765 aa8.31□□□□□ -1.08
HERC4-211ENST00000492996 NIP7Q9Y221 180 aaKnown RBP eCLIP8.31□□□□□ -1.08
HERC4-211ENST00000492996 EIF6P56537 245 aaKnown RBP8.31□□□□□ -1.08
HERC4-211ENST00000492996 DACT2Q5SW24 774 aa8.31□□□□□ -1.08
HERC4-211ENST00000492996 BLOC1S2Q6QNY1 142 aa8.31□□□□□ -1.08
HERC4-211ENST00000492996 APOBEC3FQ8IUX4 373 aaKnown RBP8.31□□□□□ -1.08
HERC4-211ENST00000492996 CNPY2Q9Y2B0 182 aa8.31□□□□□ -1.08
HERC4-211ENST00000492996 ZSCAN21Q9Y5A6 473 aaPredicted RBP8.31□□□□□ -1.08
HERC4-211ENST00000492996 FIBPO43427 364 aa8.31□□□□□ -1.08
HERC4-211ENST00000492996 STX6O43752 255 aa8.31□□□□□ -1.08
HERC4-211ENST00000492996 TAF5LO75529 589 aa8.31□□□□□ -1.08
HERC4-211ENST00000492996 MAPK8IP2Q13387 824 aaPredicted RBP8.31□□□□□ -1.08
HERC4-211ENST00000492996 VPS53Q5VIR6 699 aa8.31□□□□□ -1.08
HERC4-211ENST00000492996 RNF20Q5VTR2 975 aa8.31□□□□□ -1.08
HERC4-211ENST00000492996 USP48Q86UV5 1035 aa8.31□□□□□ -1.08
HERC4-211ENST00000492996 RNF214Q8ND24 703 aa8.31□□□□□ -1.08
HERC4-211ENST00000492996 TBC1D16Q8TBP0 767 aa8.31□□□□□ -1.08
HERC4-211ENST00000492996 LRRC2Q9BYS8 371 aa8.31□□□□□ -1.08
HERC4-211ENST00000492996 TPCN1Q9ULQ1 816 aa8.31□□□□□ -1.08
HERC4-211ENST00000492996 TCHHQ07283 1943 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 76.2 ms