RNA–Protein interactions for RNA: ENST00000491128.5

SMPD4-219, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 2,570 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-219ENST00000491128 TMC4Q7Z404 712 aa16.49■□□□□ 0.23
SMPD4-219ENST00000491128 CERS5Q8N5B7 392 aa16.49■□□□□ 0.23
SMPD4-219ENST00000491128 CNKSR1Q969H4 720 aa16.49■□□□□ 0.23
SMPD4-219ENST00000491128 ZKSCAN3Q9BRR0 538 aa16.49■□□□□ 0.23
SMPD4-219ENST00000491128 SENP2Q9HC62 589 aa16.49■□□□□ 0.23
SMPD4-219ENST00000491128 SLX4Q8IY92 1834 aa16.49■□□□□ 0.23
SMPD4-219ENST00000491128 PRC1O43663 620 aa16.49■□□□□ 0.23
SMPD4-219ENST00000491128 CYP2D6P10635 497 aa16.49■□□□□ 0.23
SMPD4-219ENST00000491128 SCNN1DP51172 638 aa16.49■□□□□ 0.23
SMPD4-219ENST00000491128 RALYLQ86SE5 291 aaKnown RBP16.49■□□□□ 0.23
SMPD4-219ENST00000491128 SH3RF3Q8TEJ3 882 aaPredicted RBP16.49■□□□□ 0.23
SMPD4-219ENST00000491128 C7orf43Q8WVR3 580 aa16.49■□□□□ 0.23
SMPD4-219ENST00000491128 NCOA5Q9HCD5 579 aaKnown RBP16.49■□□□□ 0.23
SMPD4-219ENST00000491128 ZDHHC9Q9Y397 364 aa16.49■□□□□ 0.23
SMPD4-219ENST00000491128 CACNA1SQ13698 1873 aa16.49■□□□□ 0.23
SMPD4-219ENST00000491128 DUOX1Q9NRD9 1551 aa16.49■□□□□ 0.23
SMPD4-219ENST00000491128 CCDC125Q86Z20 511 aa16.48■□□□□ 0.23
SMPD4-219ENST00000491128 TAOK2Q9UL54 1235 aa16.48■□□□□ 0.23
SMPD4-219ENST00000491128 NCOA7Q8NI08 942 aa16.48■□□□□ 0.23
SMPD4-219ENST00000491128 NACAP1Q9BZK3 213 aa16.48■□□□□ 0.23
SMPD4-219ENST00000491128 DOCK2Q92608 1830 aa16.48■□□□□ 0.23
SMPD4-219ENST00000491128 USP17L12C9JPN9 530 aa16.47■□□□□ 0.23
SMPD4-219ENST00000491128 USP17L21D6R901 530 aa16.47■□□□□ 0.23
SMPD4-219ENST00000491128 KDM4AO75164 1064 aa16.47■□□□□ 0.23
SMPD4-219ENST00000491128 RXRAP19793 462 aa16.47■□□□□ 0.23
SMPD4-219ENST00000491128 SPTY2D1Q68D10 685 aaPredicted RBP16.47■□□□□ 0.23
SMPD4-219ENST00000491128 MB21D2Q8IYB1 491 aaPredicted RBP16.47■□□□□ 0.23
SMPD4-219ENST00000491128 RAB3GAP1Q15042 981 aa16.47■□□□□ 0.23
SMPD4-219ENST00000491128 TTLL6Q8N841 843 aa16.47■□□□□ 0.23
SMPD4-219ENST00000491128 COA1Q9GZY4 146 aa16.47■□□□□ 0.23
SMPD4-219ENST00000491128 PCDHAC2Q9Y5I4 1007 aa16.47■□□□□ 0.23
SMPD4-219ENST00000491128 MYH13Q9UKX3 1938 aa16.47■□□□□ 0.23
SMPD4-219ENST00000491128 PDS5AQ29RF7 1337 aaKnown RBP16.47■□□□□ 0.23
SMPD4-219ENST00000491128 JAK2O60674 1132 aa16.46■□□□□ 0.23
SMPD4-219ENST00000491128 PPARAQ07869 468 aa16.46■□□□□ 0.23
SMPD4-219ENST00000491128 SLC16A10Q8TF71 515 aa16.46■□□□□ 0.23
SMPD4-219ENST00000491128 USP17L8P0C7I0 530 aa16.46■□□□□ 0.23
SMPD4-219ENST00000491128 GNAT2P19087 354 aa16.46■□□□□ 0.23
SMPD4-219ENST00000491128 GJB2P29033 226 aa16.46■□□□□ 0.23
SMPD4-219ENST00000491128 FOSBP53539 338 aa16.46■□□□□ 0.23
SMPD4-219ENST00000491128 TRDNQ13061 729 aa16.46■□□□□ 0.23
SMPD4-219ENST00000491128 CTR9Q6PD62 1173 aa16.46■□□□□ 0.23
SMPD4-219ENST00000491128 TGFBRAP1Q8WUH2 860 aa16.46■□□□□ 0.23
SMPD4-219ENST00000491128 SMC3Q9UQE7 1217 aa16.46■□□□□ 0.23
SMPD4-219ENST00000491128 HMGB1P09429 215 aaKnown RBP16.45■□□□□ 0.22
SMPD4-219ENST00000491128 BTDP43251 543 aa16.45■□□□□ 0.22
SMPD4-219ENST00000491128 SCRN1Q12765 414 aa16.45■□□□□ 0.22
SMPD4-219ENST00000491128 MAPKAPK5Q8IW41 473 aa16.45■□□□□ 0.22
SMPD4-219ENST00000491128 DDX11Q96FC9 970 aa16.45■□□□□ 0.22
SMPD4-219ENST00000491128 DCP1AQ9NPI6 582 aaPredicted RBP16.45■□□□□ 0.22
SMPD4-219ENST00000491128 ZNF277Q9NRM2 450 aaPredicted RBP16.45■□□□□ 0.22
SMPD4-219ENST00000491128 ZSWIM5Q9P217 1185 aa16.45■□□□□ 0.22
SMPD4-219ENST00000491128 SAP30BPQ9UHR5 308 aaKnown RBP16.45■□□□□ 0.22
SMPD4-219ENST00000491128 BRPF3Q9ULD4 1205 aa16.45■□□□□ 0.22
SMPD4-219ENST00000491128 SALL1Q9NSC2 1324 aa16.45■□□□□ 0.22
SMPD4-219ENST00000491128 MCM5P33992 734 aa16.45■□□□□ 0.22
SMPD4-219ENST00000491128 ANKRD1Q15327 319 aa16.45■□□□□ 0.22
SMPD4-219ENST00000491128 ALX1Q15699 326 aa16.45■□□□□ 0.22
SMPD4-219ENST00000491128 KIAA0825Q8IV33 1275 aa16.45■□□□□ 0.22
SMPD4-219ENST00000491128 CCDC144CPQ8IYA2 1237 aa16.45■□□□□ 0.22
SMPD4-219ENST00000491128 MCM9Q9NXL9 1143 aa16.45■□□□□ 0.22
SMPD4-219ENST00000491128 C10orf71Q711Q0 1435 aa16.45■□□□□ 0.22
SMPD4-219ENST00000491128 ECE2O60344 883 aa16.44■□□□□ 0.22
SMPD4-219ENST00000491128 AKNAD1Q5T1N1 836 aa16.44■□□□□ 0.22
SMPD4-219ENST00000491128 MFSD6Q6ZSS7 791 aa16.44■□□□□ 0.22
SMPD4-219ENST00000491128 INTS4Q96HW7 963 aaKnown RBP16.44■□□□□ 0.22
SMPD4-219ENST00000491128 MYL10Q9BUA6 226 aa16.44■□□□□ 0.22
SMPD4-219ENST00000491128 RTFDC1Q9BY42 306 aaPredicted RBP16.44■□□□□ 0.22
SMPD4-219ENST00000491128 CWC22Q9HCG8 908 aaKnown RBP16.44■□□□□ 0.22
SMPD4-219ENST00000491128 USP5P45974 858 aa16.44■□□□□ 0.22
SMPD4-219ENST00000491128 ZSCAN31Q96LW9 406 aaPredicted RBP16.44■□□□□ 0.22
SMPD4-219ENST00000491128 CRNKL1Q9BZJ0 848 aaKnown RBP16.44■□□□□ 0.22
SMPD4-219ENST00000491128 MTFR1LQ9H019 292 aa16.44■□□□□ 0.22
SMPD4-219ENST00000491128 CIZ1Q9ULV3 898 aaPredicted RBP16.44■□□□□ 0.22
SMPD4-219ENST00000491128 TTF2Q9UNY4 1162 aaKnown RBP16.44■□□□□ 0.22
SMPD4-219ENST00000491128 CHD4Q14839 1912 aa16.44■□□□□ 0.22
SMPD4-219ENST00000491128 PPIP5K2O43314 1243 aa16.43■□□□□ 0.22
SMPD4-219ENST00000491128 CHMP4CQ96CF2 233 aa16.43■□□□□ 0.22
SMPD4-219ENST00000491128 EYA3Q99504 573 aa16.43■□□□□ 0.22
SMPD4-219ENST00000491128 SH2B1Q9NRF2 756 aaPredicted RBP16.43■□□□□ 0.22
SMPD4-219ENST00000491128 LTBP1Q14766 1721 aa16.43■□□□□ 0.22
SMPD4-219ENST00000491128 POLD1P28340 1107 aa16.43■□□□□ 0.22
SMPD4-219ENST00000491128 DYNLL2Q96FJ2 89 aa16.43■□□□□ 0.22
SMPD4-219ENST00000491128 MROH7-TTC4A0A0A0MT08 1334 aa16.43■□□□□ 0.22
SMPD4-219ENST00000491128 LRRC37AA6NMS7 1700 aa16.43■□□□□ 0.22
SMPD4-219ENST00000491128 KLF18A0A0U1RQI7 1052 aa16.42■□□□□ 0.22
SMPD4-219ENST00000491128 PDIA3P30101 505 aaKnown RBP16.42■□□□□ 0.22
SMPD4-219ENST00000491128 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.42■□□□□ 0.22
SMPD4-219ENST00000491128 PICALMQ13492 652 aa16.42■□□□□ 0.22
SMPD4-219ENST00000491128 TPRNQ4KMQ1 711 aa16.42■□□□□ 0.22
SMPD4-219ENST00000491128 GTF3C6Q969F1 213 aa16.42■□□□□ 0.22
SMPD4-219ENST00000491128 ALDH8A1Q9H2A2 487 aaPredicted RBP16.42■□□□□ 0.22
SMPD4-219ENST00000491128 SYT1P21579 422 aa16.41■□□□□ 0.22
SMPD4-219ENST00000491128 FAM47AQ5JRC9 791 aa16.41■□□□□ 0.22
SMPD4-219ENST00000491128 FAM205AQ6ZU69 1335 aa16.41■□□□□ 0.22
SMPD4-219ENST00000491128 DAGLAQ9Y4D2 1042 aa16.41■□□□□ 0.22
SMPD4-219ENST00000491128 YDJCA8MPS7 323 aa16.41■□□□□ 0.22
SMPD4-219ENST00000491128 RANBP6O60518 1105 aaKnown RBP16.41■□□□□ 0.22
SMPD4-219ENST00000491128 SLURP2P0DP57 97 aa16.41■□□□□ 0.22
SMPD4-219ENST00000491128 MCM4P33991 863 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 105.8 ms