RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 TTC39AQ5SRH9 613 aa22.29■■□□□ 1.16
COL9A3-214ENST00000490398 GAKO14976 1311 aa22.29■■□□□ 1.16
COL9A3-214ENST00000490398 UQCRFS1P1P0C7P4 283 aa22.28■■□□□ 1.16
COL9A3-214ENST00000490398 RRP1P56182 461 aaKnown RBP22.28■■□□□ 1.16
COL9A3-214ENST00000490398 DZIP1Q86YF9 867 aaKnown RBP22.28■■□□□ 1.16
COL9A3-214ENST00000490398 ZFPM1Q8IX07 1006 aa22.28■■□□□ 1.16
COL9A3-214ENST00000490398 ZGPATQ8N5A5 531 aaKnown RBP22.28■■□□□ 1.16
COL9A3-214ENST00000490398 RHPN1Q8TCX5 695 aa22.28■■□□□ 1.16
COL9A3-214ENST00000490398 USP40Q9NVE5 1235 aa22.28■■□□□ 1.16
COL9A3-214ENST00000490398 TNNI2P48788 182 aa22.27■■□□□ 1.16
COL9A3-214ENST00000490398 ERICH6Q7L0X2 663 aa22.27■■□□□ 1.16
COL9A3-214ENST00000490398 NSUN4Q96CB9 384 aaKnown RBP22.27■■□□□ 1.16
COL9A3-214ENST00000490398 FAM198AQ9UFP1 575 aa22.27■■□□□ 1.16
COL9A3-214ENST00000490398 NDUFB9Q9Y6M9 179 aa22.27■■□□□ 1.16
COL9A3-214ENST00000490398 PPP1R12BO60237 982 aaPredicted RBP22.26■■□□□ 1.15
COL9A3-214ENST00000490398 CYP2E1P05181 493 aaPredicted RBP22.26■■□□□ 1.15
COL9A3-214ENST00000490398 ZAP70P43403 619 aa22.26■■□□□ 1.15
COL9A3-214ENST00000490398 TCP10Q12799 353 aa22.26■■□□□ 1.15
COL9A3-214ENST00000490398 CCDC158Q5M9N0 1113 aa22.26■■□□□ 1.15
COL9A3-214ENST00000490398 FKBP1CQ5VVH2 108 aa22.26■■□□□ 1.15
COL9A3-214ENST00000490398 FAM83AQ86UY5 434 aa22.26■■□□□ 1.15
COL9A3-214ENST00000490398 AACSQ86V21 672 aa22.26■■□□□ 1.15
COL9A3-214ENST00000490398 TMOD2Q9NZR1 351 aa22.26■■□□□ 1.15
COL9A3-214ENST00000490398 SPTY2D1Q68D10 685 aaPredicted RBP22.25■■□□□ 1.15
COL9A3-214ENST00000490398 ERC1Q8IUD2 1116 aa22.25■■□□□ 1.15
COL9A3-214ENST00000490398 FAM163AQ96GL9 167 aaPredicted RBP22.25■■□□□ 1.15
COL9A3-214ENST00000490398 BCL11AQ9H165 835 aa22.25■■□□□ 1.15
COL9A3-214ENST00000490398 PIH1D3Q9NQM4 214 aaKnown RBP22.25■■□□□ 1.15
COL9A3-214ENST00000490398 RAI14Q9P0K7 980 aa22.25■■□□□ 1.15
COL9A3-214ENST00000490398 MROH7-TTC4A0A0A0MT08 1334 aa22.25■■□□□ 1.15
COL9A3-214ENST00000490398 HMMRO75330 724 aa22.24■■□□□ 1.15
COL9A3-214ENST00000490398 GJA5P36382 358 aa22.24■■□□□ 1.15
COL9A3-214ENST00000490398 BTDP43251 543 aa22.24■■□□□ 1.15
COL9A3-214ENST00000490398 SPRYD7Q5W111 196 aa22.24■■□□□ 1.15
COL9A3-214ENST00000490398 FAM151AQ8WW52 585 aa22.24■■□□□ 1.15
COL9A3-214ENST00000490398 ZNF512BQ96KM6 892 aaPredicted RBP22.24■■□□□ 1.15
COL9A3-214ENST00000490398 BEGAINQ9BUH8 593 aa22.24■■□□□ 1.15
COL9A3-214ENST00000490398 PPP1R3FQ6ZSY5 799 aaPredicted RBP22.23■■□□□ 1.15
COL9A3-214ENST00000490398 CHMP4BQ9H444 224 aaKnown RBP22.23■■□□□ 1.15
COL9A3-214ENST00000490398 PRDM10Q9NQV6 1147 aa22.23■■□□□ 1.15
COL9A3-214ENST00000490398 RNF186Q9NXI6 227 aa22.23■■□□□ 1.15
COL9A3-214ENST00000490398 AKAP11Q9UKA4 1901 aa22.23■■□□□ 1.15
COL9A3-214ENST00000490398 RFX7Q2KHR2 1363 aa22.23■■□□□ 1.15
COL9A3-214ENST00000490398 GPR75-ASB3A0A0A6YYF3 556 aa22.22■■□□□ 1.15
COL9A3-214ENST00000490398 WDHD1O75717 1129 aaPredicted RBP22.22■■□□□ 1.15
COL9A3-214ENST00000490398 SLURP2P0DP57 97 aa22.22■■□□□ 1.15
COL9A3-214ENST00000490398 RGS3P49796 1198 aa22.22■■□□□ 1.15
COL9A3-214ENST00000490398 RHBDL3P58872 404 aa22.22■■□□□ 1.15
COL9A3-214ENST00000490398 HSP90AB4PQ58FF6 505 aa22.22■■□□□ 1.15
COL9A3-214ENST00000490398 SH3BP5LQ7L8J4 393 aa22.22■■□□□ 1.15
COL9A3-214ENST00000490398 CNKSR2Q8WXI2 1034 aa22.22■■□□□ 1.15
COL9A3-214ENST00000490398 SLC10A4Q96EP9 437 aa22.22■■□□□ 1.15
COL9A3-214ENST00000490398 DDX4Q9NQI0 724 aaKnown RBP22.22■■□□□ 1.15
COL9A3-214ENST00000490398 MYH2Q9UKX2 1941 aa22.21■■□□□ 1.15
COL9A3-214ENST00000490398 TRPA1O75762 1119 aa22.21■■□□□ 1.15
COL9A3-214ENST00000490398 IREB2P48200 963 aaKnown RBP22.21■■□□□ 1.15
COL9A3-214ENST00000490398 MIGA2Q7L4E1 593 aa22.21■■□□□ 1.15
COL9A3-214ENST00000490398 ADGRA1Q86SQ6 560 aa22.21■■□□□ 1.15
COL9A3-214ENST00000490398 DDX55Q8NHQ9 600 aaKnown RBP eCLIP22.21■■□□□ 1.15
COL9A3-214ENST00000490398 KIF1BPQ96EK5 621 aa22.21■■□□□ 1.15
COL9A3-214ENST00000490398 WNK4Q96J92 1243 aa22.21■■□□□ 1.15
COL9A3-214ENST00000490398 ANTXR1Q9H6X2 564 aa22.21■■□□□ 1.15
COL9A3-214ENST00000490398 ELP3Q9H9T3 547 aa22.21■■□□□ 1.15
COL9A3-214ENST00000490398 LRP2BPQ9P2M1 347 aa22.21■■□□□ 1.15
COL9A3-214ENST00000490398 PCDHB15Q9Y5E8 787 aa22.21■■□□□ 1.15
COL9A3-214ENST00000490398 SMARCA5O60264 1052 aaPredicted RBP22.2■■□□□ 1.14
COL9A3-214ENST00000490398 ANKRD13AQ8IZ07 590 aa22.2■■□□□ 1.14
COL9A3-214ENST00000490398 CRBNQ96SW2 442 aa22.2■■□□□ 1.14
COL9A3-214ENST00000490398 IDI2Q9BXS1 227 aa22.2■■□□□ 1.14
COL9A3-214ENST00000490398 RPAP1Q9BWH6 1393 aaPredicted RBP22.2■■□□□ 1.14
COL9A3-214ENST00000490398 OTOFQ9HC10 1997 aa22.19■■□□□ 1.14
COL9A3-214ENST00000490398 RAB11FIP3O75154 756 aa22.19■■□□□ 1.14
COL9A3-214ENST00000490398 MAP3K9P80192 1104 aa22.19■■□□□ 1.14
COL9A3-214ENST00000490398 VGLL4Q14135 290 aa22.19■■□□□ 1.14
COL9A3-214ENST00000490398 CA12O43570 354 aa22.18■■□□□ 1.14
COL9A3-214ENST00000490398 PICALMQ13492 652 aa22.18■■□□□ 1.14
COL9A3-214ENST00000490398 SLF2Q8IX21 1173 aa22.18■■□□□ 1.14
COL9A3-214ENST00000490398 TNS4Q8IZW8 715 aa22.18■■□□□ 1.14
COL9A3-214ENST00000490398 CLASRPQ8N2M8 674 aaKnown RBP22.18■■□□□ 1.14
COL9A3-214ENST00000490398 ZKSCAN4Q969J2 545 aaPredicted RBP22.18■■□□□ 1.14
COL9A3-214ENST00000490398 ATRNL1Q5VV63 1379 aa22.17■■□□□ 1.14
COL9A3-214ENST00000490398 DDTLA6NHG4 134 aaPredicted RBP22.17■■□□□ 1.14
COL9A3-214ENST00000490398 TM4SF4P48230 202 aa22.17■■□□□ 1.14
COL9A3-214ENST00000490398 GSTO1P78417 241 aa22.17■■□□□ 1.14
COL9A3-214ENST00000490398 NAA16Q6N069 864 aaPredicted RBP22.17■■□□□ 1.14
COL9A3-214ENST00000490398 SNCAIPQ9Y6H5 919 aa22.17■■□□□ 1.14
COL9A3-214ENST00000490398 UNCXA6NJT0 531 aa22.16■■□□□ 1.14
COL9A3-214ENST00000490398 ENTPD3O75355 529 aa22.16■■□□□ 1.14
COL9A3-214ENST00000490398 LDHCP07864 332 aa22.16■■□□□ 1.14
COL9A3-214ENST00000490398 SH3RF3Q8TEJ3 882 aaPredicted RBP22.16■■□□□ 1.14
COL9A3-214ENST00000490398 OPTNQ96CV9 577 aa22.16■■□□□ 1.14
COL9A3-214ENST00000490398 WRNIP1Q96S55 665 aa22.16■■□□□ 1.14
COL9A3-214ENST00000490398 MYO5AQ9Y4I1 1855 aaKnown RBP22.15■■□□□ 1.14
COL9A3-214ENST00000490398 IFIT2P09913 472 aaKnown RBP22.15■■□□□ 1.14
COL9A3-214ENST00000490398 INPP5BP32019 993 aa22.15■■□□□ 1.14
COL9A3-214ENST00000490398 EDC3Q96F86 508 aaKnown RBP22.15■■□□□ 1.14
COL9A3-214ENST00000490398 R3HDMLQ9H3Y0 253 aa22.15■■□□□ 1.14
COL9A3-214ENST00000490398 SAGE1Q9NXZ1 904 aa22.15■■□□□ 1.14
COL9A3-214ENST00000490398 AATFQ9NY61 560 aaKnown RBP eCLIP22.15■■□□□ 1.14
COL9A3-214ENST00000490398 TBC1D8O95759 1140 aa22.14■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 79.7 ms