RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 MBD4O95243 580 aa16.67■□□□□ 0.26
C9orf3-221ENST00000489562 CHGBP05060 677 aa16.67■□□□□ 0.26
C9orf3-221ENST00000489562 SLFNL1Q499Z3 407 aa16.67■□□□□ 0.26
C9orf3-221ENST00000489562 MIGA1Q8NAN2 632 aa16.67■□□□□ 0.26
C9orf3-221ENST00000489562 RIOK1Q9BRS2 568 aaKnown RBP16.67■□□□□ 0.26
C9orf3-221ENST00000489562 AATFQ9NY61 560 aaKnown RBP eCLIP16.67■□□□□ 0.26
C9orf3-221ENST00000489562 NAV1Q8NEY1 1877 aa16.67■□□□□ 0.26
C9orf3-221ENST00000489562 RPAP1Q9BWH6 1393 aaPredicted RBP16.66■□□□□ 0.26
C9orf3-221ENST00000489562 SPDYE2BA6NHP3 402 aa16.66■□□□□ 0.26
C9orf3-221ENST00000489562 M0R2C6 588 aa16.66■□□□□ 0.26
C9orf3-221ENST00000489562 MYO1BO43795 1136 aa16.66■□□□□ 0.26
C9orf3-221ENST00000489562 SPDYE6P0CI01 402 aa16.66■□□□□ 0.26
C9orf3-221ENST00000489562 C8orf34Q49A92 452 aa16.66■□□□□ 0.26
C9orf3-221ENST00000489562 APOBEC3HQ6NTF7 200 aaKnown RBP16.66■□□□□ 0.26
C9orf3-221ENST00000489562 ZBED3Q96IU2 234 aaPredicted RBP16.66■□□□□ 0.26
C9orf3-221ENST00000489562 STRBPQ96SI9 672 aaKnown RBP16.66■□□□□ 0.26
C9orf3-221ENST00000489562 SEC62Q99442 399 aaKnown RBP16.66■□□□□ 0.26
C9orf3-221ENST00000489562 CRNKL1Q9BZJ0 848 aaKnown RBP16.66■□□□□ 0.26
C9orf3-221ENST00000489562 ADARB2Q9NS39 739 aaKnown RBP16.66■□□□□ 0.26
C9orf3-221ENST00000489562 HACL1Q9UJ83 578 aa16.66■□□□□ 0.26
C9orf3-221ENST00000489562 MYH1P12882 1939 aa16.66■□□□□ 0.26
C9orf3-221ENST00000489562 BAZ2AQ9UIF9 1905 aaKnown RBP16.65■□□□□ 0.26
C9orf3-221ENST00000489562 REC8O95072 547 aa16.65■□□□□ 0.26
C9orf3-221ENST00000489562 KIF4BQ2VIQ3 1234 aa16.65■□□□□ 0.26
C9orf3-221ENST00000489562 KIAA1211Q6ZU35 1233 aa16.65■□□□□ 0.26
C9orf3-221ENST00000489562 TMOD2Q9NZR1 351 aa16.65■□□□□ 0.26
C9orf3-221ENST00000489562 EPB41L2O43491 1005 aaKnown RBP16.64■□□□□ 0.25
C9orf3-221ENST00000489562 EPS15P42566 896 aa16.64■□□□□ 0.25
C9orf3-221ENST00000489562 ZNF589Q86UQ0 364 aaPredicted RBP16.64■□□□□ 0.25
C9orf3-221ENST00000489562 LCORLQ8N3X6 602 aa16.64■□□□□ 0.25
C9orf3-221ENST00000489562 ARMT1Q9H993 441 aa16.64■□□□□ 0.25
C9orf3-221ENST00000489562 SHTN1A0MZ66 631 aa16.63■□□□□ 0.25
C9orf3-221ENST00000489562 WNT10BO00744 389 aa16.63■□□□□ 0.25
C9orf3-221ENST00000489562 NPM3O75607 178 aaKnown RBP16.63■□□□□ 0.25
C9orf3-221ENST00000489562 RHBDL3P58872 404 aa16.63■□□□□ 0.25
C9orf3-221ENST00000489562 DYNLL1P63167 89 aaKnown RBP16.63■□□□□ 0.25
C9orf3-221ENST00000489562 CDC42EP5Q6NZY7 148 aa16.63■□□□□ 0.25
C9orf3-221ENST00000489562 GIMAP6Q6P9H5 292 aa16.63■□□□□ 0.25
C9orf3-221ENST00000489562 CCDC129Q6ZRS4 1044 aa16.63■□□□□ 0.25
C9orf3-221ENST00000489562 SAMD7Q7Z3H4 446 aa16.63■□□□□ 0.25
C9orf3-221ENST00000489562 TEX11Q8IYF3 940 aa16.63■□□□□ 0.25
C9orf3-221ENST00000489562 SH3RF3Q8TEJ3 882 aaPredicted RBP16.63■□□□□ 0.25
C9orf3-221ENST00000489562 DDRGK1Q96HY6 314 aa16.63■□□□□ 0.25
C9orf3-221ENST00000489562 PRMT6Q96LA8 375 aaPredicted RBP16.63■□□□□ 0.25
C9orf3-221ENST00000489562 DSCC1Q9BVC3 393 aa16.63■□□□□ 0.25
C9orf3-221ENST00000489562 ATP8A2Q9NTI2 1148 aa16.63■□□□□ 0.25
C9orf3-221ENST00000489562 USP40Q9NVE5 1235 aa16.63■□□□□ 0.25
C9orf3-221ENST00000489562 SLC4A4Q9Y6R1 1079 aa16.63■□□□□ 0.25
C9orf3-221ENST00000489562 POLR2AP24928 1970 aaKnown RBP16.63■□□□□ 0.25
C9orf3-221ENST00000489562 LAMB1P07942 1786 aa16.63■□□□□ 0.25
C9orf3-221ENST00000489562 LAMA4Q16363 1823 aa16.63■□□□□ 0.25
C9orf3-221ENST00000489562 DDX60LQ5H9U9 1706 aaKnown RBP16.62■□□□□ 0.25
C9orf3-221ENST00000489562 UTRNP46939 3433 aa16.62■□□□□ 0.25
C9orf3-221ENST00000489562 SPDYE2Q495Y8 402 aa16.62■□□□□ 0.25
C9orf3-221ENST00000489562 TBC1D10BQ4KMP7 808 aaPredicted RBP16.62■□□□□ 0.25
C9orf3-221ENST00000489562 RBM26Q5T8P6 1007 aaKnown RBP16.62■□□□□ 0.25
C9orf3-221ENST00000489562 FKBP1CQ5VVH2 108 aa16.62■□□□□ 0.25
C9orf3-221ENST00000489562 USP50Q70EL3 339 aaPredicted RBP16.62■□□□□ 0.25
C9orf3-221ENST00000489562 IDI2Q9BXS1 227 aa16.62■□□□□ 0.25
C9orf3-221ENST00000489562 NACAP1Q9BZK3 213 aa16.62■□□□□ 0.25
C9orf3-221ENST00000489562 IL25Q9H293 177 aa16.62■□□□□ 0.25
C9orf3-221ENST00000489562 PATL2C9JE40 543 aaKnown RBP16.61■□□□□ 0.25
C9orf3-221ENST00000489562 HSPD1P10809 573 aaKnown RBP16.61■□□□□ 0.25
C9orf3-221ENST00000489562 EPHX2P34913 555 aa16.61■□□□□ 0.25
C9orf3-221ENST00000489562 USP5P45974 858 aa16.61■□□□□ 0.25
C9orf3-221ENST00000489562 TNFAIP1Q13829 316 aa16.61■□□□□ 0.25
C9orf3-221ENST00000489562 PNMA8AQ86V59 439 aaPredicted RBP16.61■□□□□ 0.25
C9orf3-221ENST00000489562 TDRD3Q9H7E2 651 aaKnown RBP16.61■□□□□ 0.25
C9orf3-221ENST00000489562 ANO2Q9NQ90 1003 aa16.61■□□□□ 0.25
C9orf3-221ENST00000489562 ZNF70Q9UC06 446 aaPredicted RBP16.61■□□□□ 0.25
C9orf3-221ENST00000489562 PCDHAC2Q9Y5I4 1007 aa16.61■□□□□ 0.25
C9orf3-221ENST00000489562 ZMYM6O95789 1325 aa16.61■□□□□ 0.25
C9orf3-221ENST00000489562 EGFRP00533 1210 aa16.6■□□□□ 0.25
C9orf3-221ENST00000489562 VEGFAP15692 232 aaPredicted RBP16.6■□□□□ 0.25
C9orf3-221ENST00000489562 ALX1Q15699 326 aa16.6■□□□□ 0.25
C9orf3-221ENST00000489562 NBPF9Q3BBW0 867 aa16.6■□□□□ 0.25
C9orf3-221ENST00000489562 TRPM4Q8TD43 1214 aa16.6■□□□□ 0.25
C9orf3-221ENST00000489562 BACH2Q9BYV9 841 aa16.6■□□□□ 0.25
C9orf3-221ENST00000489562 TAF1DQ9H5J8 278 aaPredicted RBP16.6■□□□□ 0.25
C9orf3-221ENST00000489562 COL2A1P02458 1487 aaPredicted RBP16.6■□□□□ 0.25
C9orf3-221ENST00000489562 GSG1L2A8MUP6 293 aa16.59■□□□□ 0.25
C9orf3-221ENST00000489562 ENTPD3O75355 529 aa16.59■□□□□ 0.25
C9orf3-221ENST00000489562 WDHD1O75717 1129 aaPredicted RBP16.59■□□□□ 0.25
C9orf3-221ENST00000489562 APPP05067 770 aa16.59■□□□□ 0.25
C9orf3-221ENST00000489562 TNNI2P48788 182 aa16.59■□□□□ 0.25
C9orf3-221ENST00000489562 APOBEC3FQ8IUX4 373 aaKnown RBP16.59■□□□□ 0.25
C9orf3-221ENST00000489562 ZC3H15Q8WU90 426 aaKnown RBP16.59■□□□□ 0.25
C9orf3-221ENST00000489562 TGFBRAP1Q8WUH2 860 aa16.59■□□□□ 0.25
C9orf3-221ENST00000489562 LSG1Q9H089 658 aaKnown RBP16.59■□□□□ 0.25
C9orf3-221ENST00000489562 CTNNA3Q9UI47 895 aa16.59■□□□□ 0.25
C9orf3-221ENST00000489562 PITPNM2Q9BZ72 1349 aa16.59■□□□□ 0.25
C9orf3-221ENST00000489562 POTECB2RU33 542 aa16.58■□□□□ 0.24
C9orf3-221ENST00000489562 PRKAB2O43741 272 aa16.58■□□□□ 0.24
C9orf3-221ENST00000489562 VPS53Q5VIR6 699 aa16.58■□□□□ 0.24
C9orf3-221ENST00000489562 FAM83AQ86UY5 434 aa16.58■□□□□ 0.24
C9orf3-221ENST00000489562 AMOTL1Q8IY63 956 aa16.58■□□□□ 0.24
C9orf3-221ENST00000489562 IFNL3Q8IZI9 196 aa16.58■□□□□ 0.24
C9orf3-221ENST00000489562 SDR42E1Q8WUS8 393 aa16.58■□□□□ 0.24
C9orf3-221ENST00000489562 MAP4K1Q92918 833 aa16.58■□□□□ 0.24
C9orf3-221ENST00000489562 NAPBQ9H115 298 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms