RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 TSHZ3Q63HK5 1081 aa12.51□□□□□ -0.41
SKA1-204ENST00000488454 ERICH6Q7L0X2 663 aa12.51□□□□□ -0.41
SKA1-204ENST00000488454 PLEKHM2Q8IWE5 1019 aa12.51□□□□□ -0.41
SKA1-204ENST00000488454 DPF2Q92785 391 aa12.51□□□□□ -0.41
SKA1-204ENST00000488454 HAUS7Q99871 368 aa12.51□□□□□ -0.41
SKA1-204ENST00000488454 MXD3Q9BW11 206 aa12.51□□□□□ -0.41
SKA1-204ENST00000488454 F8W031 263 aaPredicted RBP12.5□□□□□ -0.41
SKA1-204ENST00000488454 GOLIM4O00461 696 aa12.5□□□□□ -0.41
SKA1-204ENST00000488454 USP17L8P0C7I0 530 aa12.5□□□□□ -0.41
SKA1-204ENST00000488454 MMP14P50281 582 aa12.5□□□□□ -0.41
SKA1-204ENST00000488454 PI16Q6UXB8 463 aa12.5□□□□□ -0.41
SKA1-204ENST00000488454 KIAA0825Q8IV33 1275 aa12.5□□□□□ -0.41
SKA1-204ENST00000488454 PAG1Q9NWQ8 432 aa12.5□□□□□ -0.41
SKA1-204ENST00000488454 RAI14Q9P0K7 980 aa12.5□□□□□ -0.41
SKA1-204ENST00000488454 CNOT7Q9UIV1 285 aaKnown RBP12.5□□□□□ -0.41
SKA1-204ENST00000488454 SALL1Q9NSC2 1324 aa12.5□□□□□ -0.41
SKA1-204ENST00000488454 COL4A5P29400 1685 aa12.5□□□□□ -0.41
SKA1-204ENST00000488454 A0A1B0GUL6 1792 aa12.49□□□□□ -0.41
SKA1-204ENST00000488454 MAST3O60307 1309 aa12.49□□□□□ -0.41
SKA1-204ENST00000488454 AOX1Q06278 1338 aa12.49□□□□□ -0.41
SKA1-204ENST00000488454 IQCA1LA6NCM1 817 aa12.49□□□□□ -0.41
SKA1-204ENST00000488454 IGSF3O75054 1194 aa12.49□□□□□ -0.41
SKA1-204ENST00000488454 CYP2E1P05181 493 aaPredicted RBP12.49□□□□□ -0.41
SKA1-204ENST00000488454 YY1P25490 414 aa12.49□□□□□ -0.41
SKA1-204ENST00000488454 MAP3K12Q12852 859 aa12.49□□□□□ -0.41
SKA1-204ENST00000488454 TBC1D9Q6ZT07 1266 aa12.49□□□□□ -0.41
SKA1-204ENST00000488454 DZIP1Q86YF9 867 aaKnown RBP12.49□□□□□ -0.41
SKA1-204ENST00000488454 SLF2Q8IX21 1173 aa12.49□□□□□ -0.41
SKA1-204ENST00000488454 ZNF526Q8TF50 670 aaPredicted RBP12.49□□□□□ -0.41
SKA1-204ENST00000488454 KHSRPQ92945 711 aaKnown RBP eCLIP12.49□□□□□ -0.417e-7■■■□□ 16.7
SKA1-204ENST00000488454 OSBPL3Q9H4L5 887 aa12.49□□□□□ -0.41
SKA1-204ENST00000488454 TTF2Q9UNY4 1162 aaKnown RBP12.49□□□□□ -0.41
SKA1-204ENST00000488454 PCDHGA4Q9Y5G9 962 aa12.49□□□□□ -0.41
SKA1-204ENST00000488454 SBF1O95248 1867 aa12.48□□□□□ -0.41
SKA1-204ENST00000488454 SALL3Q9BXA9 1300 aa12.48□□□□□ -0.41
SKA1-204ENST00000488454 TRIM6-TRIM34B2RNG4 842 aa12.48□□□□□ -0.41
SKA1-204ENST00000488454 IDH1O75874 414 aaKnown RBP12.48□□□□□ -0.41
SKA1-204ENST00000488454 RBM5P52756 815 aaKnown RBP eCLIP12.48□□□□□ -0.41
SKA1-204ENST00000488454 GSTO1P78417 241 aa12.48□□□□□ -0.41
SKA1-204ENST00000488454 LRRFIP1Q32MZ4 808 aaKnown RBP12.48□□□□□ -0.41
SKA1-204ENST00000488454 CERS5Q8N5B7 392 aa12.48□□□□□ -0.41
SKA1-204ENST00000488454 PI4K2BQ8TCG2 481 aa12.48□□□□□ -0.41
SKA1-204ENST00000488454 PTCD2Q8WV60 388 aaKnown RBP12.48□□□□□ -0.41
SKA1-204ENST00000488454 GMLQ99445 158 aa12.48□□□□□ -0.41
SKA1-204ENST00000488454 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.48□□□□□ -0.41
SKA1-204ENST00000488454 GPRC5DQ9NZD1 345 aa12.48□□□□□ -0.41
SKA1-204ENST00000488454 HACL1Q9UJ83 578 aa12.48□□□□□ -0.41
SKA1-204ENST00000488454 NDUFB9Q9Y6M9 179 aa12.48□□□□□ -0.41
SKA1-204ENST00000488454 MAP4K4O95819 1239 aaPredicted RBP12.47□□□□□ -0.41
SKA1-204ENST00000488454 LDHCP07864 332 aa12.47□□□□□ -0.41
SKA1-204ENST00000488454 VEGFAP15692 232 aaPredicted RBP12.47□□□□□ -0.41
SKA1-204ENST00000488454 PRDX5P30044 214 aa12.47□□□□□ -0.41
SKA1-204ENST00000488454 RGS3P49796 1198 aa12.47□□□□□ -0.41
SKA1-204ENST00000488454 SCNN1DP51172 638 aa12.47□□□□□ -0.41
SKA1-204ENST00000488454 PLCB2Q00722 1185 aa12.47□□□□□ -0.41
SKA1-204ENST00000488454 RBM26Q5T8P6 1007 aaKnown RBP12.47□□□□□ -0.41
SKA1-204ENST00000488454 ZSCAN25Q6NSZ9 544 aa12.47□□□□□ -0.41
SKA1-204ENST00000488454 RILPL2Q969X0 211 aa12.47□□□□□ -0.41
SKA1-204ENST00000488454 MRIQ9BWK5 157 aa12.47□□□□□ -0.41
SKA1-204ENST00000488454 RRAGCQ9HB90 399 aa12.47□□□□□ -0.41
SKA1-204ENST00000488454 PIH1D3Q9NQM4 214 aaKnown RBP12.47□□□□□ -0.41
SKA1-204ENST00000488454 CCDC88AQ3V6T2 1871 aa12.46□□□□□ -0.41
SKA1-204ENST00000488454 HDLBPQ00341 1268 aaKnown RBP12.46□□□□□ -0.41
SKA1-204ENST00000488454 DLGAP5Q15398 846 aa12.46□□□□□ -0.41
SKA1-204ENST00000488454 NAA16Q6N069 864 aaPredicted RBP12.46□□□□□ -0.41
SKA1-204ENST00000488454 CNTROBQ8N137 903 aa12.46□□□□□ -0.41
SKA1-204ENST00000488454 TEKT1Q969V4 418 aa12.46□□□□□ -0.41
SKA1-204ENST00000488454 EVI5LQ96CN4 794 aa12.46□□□□□ -0.41
SKA1-204ENST00000488454 EDC3Q96F86 508 aaKnown RBP12.46□□□□□ -0.41
SKA1-204ENST00000488454 ANTXR1Q9H6X2 564 aa12.46□□□□□ -0.41
SKA1-204ENST00000488454 GPBP1L1Q9HC44 474 aaPredicted RBP12.46□□□□□ -0.41
SKA1-204ENST00000488454 TSHZ2Q9NRE2 1034 aa12.46□□□□□ -0.41
SKA1-204ENST00000488454 ADARB2Q9NS39 739 aaKnown RBP12.46□□□□□ -0.41
SKA1-204ENST00000488454 SERPINA10Q9UK55 444 aa12.46□□□□□ -0.41
SKA1-204ENST00000488454 CHD4Q14839 1912 aa12.46□□□□□ -0.42
SKA1-204ENST00000488454 ARAP2Q8WZ64 1704 aa12.45□□□□□ -0.42
SKA1-204ENST00000488454 DICER1Q9UPY3 1922 aaKnown RBP12.45□□□□□ -0.42
SKA1-204ENST00000488454 EPHX2P34913 555 aa12.45□□□□□ -0.42
SKA1-204ENST00000488454 EPS15P42566 896 aa12.45□□□□□ -0.42
SKA1-204ENST00000488454 CRKP46108 304 aa12.45□□□□□ -0.42
SKA1-204ENST00000488454 ZNF280AP59817 542 aaPredicted RBP12.45□□□□□ -0.42
SKA1-204ENST00000488454 MECOMQ03112 1051 aa12.45□□□□□ -0.42
SKA1-204ENST00000488454 GRIK5Q16478 980 aa12.45□□□□□ -0.42
SKA1-204ENST00000488454 SLC9C2Q5TAH2 1124 aa12.45□□□□□ -0.42
SKA1-204ENST00000488454 TMED8Q6PL24 325 aaPredicted RBP12.45□□□□□ -0.42
SKA1-204ENST00000488454 PNMA8AQ86V59 439 aaPredicted RBP12.45□□□□□ -0.42
SKA1-204ENST00000488454 KBTBD3Q8NAB2 608 aa12.45□□□□□ -0.42
SKA1-204ENST00000488454 NOL10Q9BSC4 688 aaKnown RBP12.45□□□□□ -0.42
SKA1-204ENST00000488454 FSD1Q9BTV5 496 aa12.45□□□□□ -0.42
SKA1-204ENST00000488454 MYOZ2Q9NPC6 264 aa12.45□□□□□ -0.42
SKA1-204ENST00000488454 COL1A1P02452 1464 aaPredicted RBP12.45□□□□□ -0.42
SKA1-204ENST00000488454 FAM205CA6NFA0 338 aa12.44□□□□□ -0.42
SKA1-204ENST00000488454 MYO1BO43795 1136 aa12.44□□□□□ -0.42
SKA1-204ENST00000488454 CYP7A1P22680 504 aa12.44□□□□□ -0.42
SKA1-204ENST00000488454 KIF4BQ2VIQ3 1234 aa12.44□□□□□ -0.42
SKA1-204ENST00000488454 CFAP100Q494V2 611 aa12.44□□□□□ -0.42
SKA1-204ENST00000488454 TBC1D10BQ4KMP7 808 aaPredicted RBP12.44□□□□□ -0.42
SKA1-204ENST00000488454 TTC22Q5TAA0 569 aa12.44□□□□□ -0.42
SKA1-204ENST00000488454 HHIPL2Q6UWX4 724 aa12.44□□□□□ -0.42
SKA1-204ENST00000488454 USP50Q70EL3 339 aaPredicted RBP12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms