RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 AACSQ86V21 672 aa17.09■□□□□ 0.33
SYNE1-226ENST00000488376 DZIP1Q86YF9 867 aaKnown RBP17.09■□□□□ 0.33
SYNE1-226ENST00000488376 ZFPM1Q8IX07 1006 aa17.09■□□□□ 0.33
SYNE1-226ENST00000488376 AIDAQ96BJ3 306 aa17.09■□□□□ 0.33
SYNE1-226ENST00000488376 GAKO14976 1311 aa17.09■□□□□ 0.33
SYNE1-226ENST00000488376 CYP2E1P05181 493 aaPredicted RBP17.08■□□□□ 0.32
SYNE1-226ENST00000488376 ZAP70P43403 619 aa17.08■□□□□ 0.32
SYNE1-226ENST00000488376 LBX1P52954 281 aa17.08■□□□□ 0.32
SYNE1-226ENST00000488376 TCP10Q12799 353 aa17.08■□□□□ 0.32
SYNE1-226ENST00000488376 MAP3K11Q16584 847 aa17.08■□□□□ 0.32
SYNE1-226ENST00000488376 SUPT20HL1Q3ZLR7 823 aa17.08■□□□□ 0.32
SYNE1-226ENST00000488376 ZGPATQ8N5A5 531 aaKnown RBP17.08■□□□□ 0.32
SYNE1-226ENST00000488376 PIH1D3Q9NQM4 214 aaKnown RBP17.08■□□□□ 0.32
SYNE1-226ENST00000488376 USP40Q9NVE5 1235 aa17.08■□□□□ 0.32
SYNE1-226ENST00000488376 FAM198AQ9UFP1 575 aa17.08■□□□□ 0.32
SYNE1-226ENST00000488376 MROH7-TTC4A0A0A0MT08 1334 aa17.07■□□□□ 0.32
SYNE1-226ENST00000488376 HMMRO75330 724 aa17.07■□□□□ 0.32
SYNE1-226ENST00000488376 CTCFP49711 727 aaPredicted RBP17.07■□□□□ 0.32
SYNE1-226ENST00000488376 CCDC158Q5M9N0 1113 aa17.07■□□□□ 0.32
SYNE1-226ENST00000488376 ERICH6Q7L0X2 663 aa17.07■□□□□ 0.32
SYNE1-226ENST00000488376 ERC1Q8IUD2 1116 aa17.07■□□□□ 0.32
SYNE1-226ENST00000488376 NSUN4Q96CB9 384 aaKnown RBP17.07■□□□□ 0.32
SYNE1-226ENST00000488376 CSRNP1Q96S65 589 aa17.07■□□□□ 0.32
SYNE1-226ENST00000488376 TMOD2Q9NZR1 351 aa17.07■□□□□ 0.32
SYNE1-226ENST00000488376 RFX7Q2KHR2 1363 aa17.06■□□□□ 0.32
SYNE1-226ENST00000488376 BTDP43251 543 aa17.06■□□□□ 0.32
SYNE1-226ENST00000488376 TNNI2P48788 182 aa17.06■□□□□ 0.32
SYNE1-226ENST00000488376 FKBP1CQ5VVH2 108 aa17.06■□□□□ 0.32
SYNE1-226ENST00000488376 SPTY2D1Q68D10 685 aaPredicted RBP17.06■□□□□ 0.32
SYNE1-226ENST00000488376 FAM83AQ86UY5 434 aa17.06■□□□□ 0.32
SYNE1-226ENST00000488376 RAI14Q9P0K7 980 aa17.06■□□□□ 0.32
SYNE1-226ENST00000488376 PPP1R12BO60237 982 aaPredicted RBP17.05■□□□□ 0.32
SYNE1-226ENST00000488376 SLURP2P0DP57 97 aa17.05■□□□□ 0.32
SYNE1-226ENST00000488376 GJA5P36382 358 aa17.05■□□□□ 0.32
SYNE1-226ENST00000488376 HSP90AB4PQ58FF6 505 aa17.05■□□□□ 0.32
SYNE1-226ENST00000488376 ADGRA1Q86SQ6 560 aa17.05■□□□□ 0.32
SYNE1-226ENST00000488376 KIF1BPQ96EK5 621 aa17.05■□□□□ 0.32
SYNE1-226ENST00000488376 FAM163AQ96GL9 167 aaPredicted RBP17.05■□□□□ 0.32
SYNE1-226ENST00000488376 ZNF512BQ96KM6 892 aaPredicted RBP17.05■□□□□ 0.32
SYNE1-226ENST00000488376 CRBNQ96SW2 442 aa17.05■□□□□ 0.32
SYNE1-226ENST00000488376 CHMP4BQ9H444 224 aaKnown RBP17.05■□□□□ 0.32
SYNE1-226ENST00000488376 ANTXR1Q9H6X2 564 aa17.05■□□□□ 0.32
SYNE1-226ENST00000488376 DDX4Q9NQI0 724 aaKnown RBP17.05■□□□□ 0.32
SYNE1-226ENST00000488376 PCDHB15Q9Y5E8 787 aa17.05■□□□□ 0.32
SYNE1-226ENST00000488376 OTOFQ9HC10 1997 aa17.04■□□□□ 0.32
SYNE1-226ENST00000488376 AKAP11Q9UKA4 1901 aa17.04■□□□□ 0.32
SYNE1-226ENST00000488376 SMARCA5O60264 1052 aaPredicted RBP17.04■□□□□ 0.32
SYNE1-226ENST00000488376 WDHD1O75717 1129 aaPredicted RBP17.04■□□□□ 0.32
SYNE1-226ENST00000488376 RGS3P49796 1198 aa17.04■□□□□ 0.32
SYNE1-226ENST00000488376 RHBDL3P58872 404 aa17.04■□□□□ 0.32
SYNE1-226ENST00000488376 SPRYD7Q5W111 196 aa17.04■□□□□ 0.32
SYNE1-226ENST00000488376 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.04■□□□□ 0.32
SYNE1-226ENST00000488376 MIGA2Q7L4E1 593 aa17.04■□□□□ 0.32
SYNE1-226ENST00000488376 CNKSR2Q8WXI2 1034 aa17.04■□□□□ 0.32
SYNE1-226ENST00000488376 LRP2BPQ9P2M1 347 aa17.04■□□□□ 0.32
SYNE1-226ENST00000488376 RPAP1Q9BWH6 1393 aaPredicted RBP17.03■□□□□ 0.32
SYNE1-226ENST00000488376 GPR75-ASB3A0A0A6YYF3 556 aa17.03■□□□□ 0.32
SYNE1-226ENST00000488376 IREB2P48200 963 aaKnown RBP17.03■□□□□ 0.32
SYNE1-226ENST00000488376 SH3BP5LQ7L8J4 393 aa17.03■□□□□ 0.32
SYNE1-226ENST00000488376 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.03■□□□□ 0.32
SYNE1-226ENST00000488376 FAM151AQ8WW52 585 aa17.03■□□□□ 0.32
SYNE1-226ENST00000488376 SLC10A4Q96EP9 437 aa17.03■□□□□ 0.32
SYNE1-226ENST00000488376 WNK4Q96J92 1243 aa17.03■□□□□ 0.32
SYNE1-226ENST00000488376 BEGAINQ9BUH8 593 aa17.03■□□□□ 0.32
SYNE1-226ENST00000488376 ELP3Q9H9T3 547 aa17.03■□□□□ 0.32
SYNE1-226ENST00000488376 RNF186Q9NXI6 227 aa17.03■□□□□ 0.32
SYNE1-226ENST00000488376 MYH2Q9UKX2 1941 aa17.03■□□□□ 0.32
SYNE1-226ENST00000488376 RAB11FIP3O75154 756 aa17.02■□□□□ 0.32
SYNE1-226ENST00000488376 TRPA1O75762 1119 aa17.02■□□□□ 0.32
SYNE1-226ENST00000488376 PICALMQ13492 652 aa17.02■□□□□ 0.32
SYNE1-226ENST00000488376 VGLL4Q14135 290 aa17.02■□□□□ 0.32
SYNE1-226ENST00000488376 CLASRPQ8N2M8 674 aaKnown RBP17.02■□□□□ 0.32
SYNE1-226ENST00000488376 IDI2Q9BXS1 227 aa17.02■□□□□ 0.32
SYNE1-226ENST00000488376 ANKRD13AQ8IZ07 590 aa17.01■□□□□ 0.31
SYNE1-226ENST00000488376 ZKSCAN4Q969J2 545 aaPredicted RBP17.01■□□□□ 0.31
SYNE1-226ENST00000488376 PRDM10Q9NQV6 1147 aa17.01■□□□□ 0.31
SYNE1-226ENST00000488376 ATRNL1Q5VV63 1379 aa17.01■□□□□ 0.31
SYNE1-226ENST00000488376 DDTLA6NHG4 134 aaPredicted RBP17■□□□□ 0.31
SYNE1-226ENST00000488376 IFIT2P09913 472 aaKnown RBP17■□□□□ 0.31
SYNE1-226ENST00000488376 GSTO1P78417 241 aa17■□□□□ 0.31
SYNE1-226ENST00000488376 NAA16Q6N069 864 aaPredicted RBP17■□□□□ 0.31
SYNE1-226ENST00000488376 SLF2Q8IX21 1173 aa17■□□□□ 0.31
SYNE1-226ENST00000488376 SH3RF3Q8TEJ3 882 aaPredicted RBP17■□□□□ 0.31
SYNE1-226ENST00000488376 EDC3Q96F86 508 aaKnown RBP17■□□□□ 0.31
SYNE1-226ENST00000488376 WRNIP1Q96S55 665 aa17■□□□□ 0.31
SYNE1-226ENST00000488376 SNCAIPQ9Y6H5 919 aa17■□□□□ 0.31
SYNE1-226ENST00000488376 MAST2Q6P0Q8 1798 aa17■□□□□ 0.31
SYNE1-226ENST00000488376 IDH1O75874 414 aaKnown RBP16.99■□□□□ 0.31
SYNE1-226ENST00000488376 INPP5BP32019 993 aa16.99■□□□□ 0.31
SYNE1-226ENST00000488376 MAP3K9P80192 1104 aa16.99■□□□□ 0.31
SYNE1-226ENST00000488376 OPTNQ96CV9 577 aa16.99■□□□□ 0.31
SYNE1-226ENST00000488376 LRRCC1Q9C099 1032 aa16.99■□□□□ 0.31
SYNE1-226ENST00000488376 DCTPP1Q9H773 170 aa16.99■□□□□ 0.31
SYNE1-226ENST00000488376 AATFQ9NY61 560 aaKnown RBP eCLIP16.99■□□□□ 0.31
SYNE1-226ENST00000488376 MYO5AQ9Y4I1 1855 aaKnown RBP16.99■□□□□ 0.31
SYNE1-226ENST00000488376 CA12O43570 354 aa16.98■□□□□ 0.31
SYNE1-226ENST00000488376 ENTPD3O75355 529 aa16.98■□□□□ 0.31
SYNE1-226ENST00000488376 LDHCP07864 332 aa16.98■□□□□ 0.31
SYNE1-226ENST00000488376 TM4SF4P48230 202 aa16.98■□□□□ 0.31
SYNE1-226ENST00000488376 DYNLL1P63167 89 aaKnown RBP16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms