RNA–Protein interactions for RNA: ENST00000488321.1

TRIM54-204, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 560 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-204ENST00000488321 KIF1BPQ96EK5 621 aa18.36■□□□□ 0.53
TRIM54-204ENST00000488321 PAPPA2Q9BXP8 1791 aa18.36■□□□□ 0.53
TRIM54-204ENST00000488321 USP40Q9NVE5 1235 aa18.36■□□□□ 0.53
TRIM54-204ENST00000488321 LRP2BPQ9P2M1 347 aa18.36■□□□□ 0.53
TRIM54-204ENST00000488321 SSC5DA1L4H1 1573 aa18.35■□□□□ 0.53
TRIM54-204ENST00000488321 CTCFP49711 727 aaPredicted RBP18.35■□□□□ 0.53
TRIM54-204ENST00000488321 MECOMQ03112 1051 aa18.35■□□□□ 0.53
TRIM54-204ENST00000488321 CLASRPQ8N2M8 674 aaKnown RBP18.35■□□□□ 0.53
TRIM54-204ENST00000488321 TEPSINQ96N21 525 aa18.35■□□□□ 0.53
TRIM54-204ENST00000488321 RAB11FIP3O75154 756 aa18.34■□□□□ 0.53
TRIM54-204ENST00000488321 IREB2P48200 963 aaKnown RBP18.34■□□□□ 0.53
TRIM54-204ENST00000488321 TCP10Q12799 353 aa18.34■□□□□ 0.53
TRIM54-204ENST00000488321 MKRN3Q13064 507 aaKnown RBP18.34■□□□□ 0.53
TRIM54-204ENST00000488321 LDLRAD1Q5T700 205 aa18.34■□□□□ 0.53
TRIM54-204ENST00000488321 FKBP1CQ5VVH2 108 aa18.34■□□□□ 0.53
TRIM54-204ENST00000488321 FAM83AQ86UY5 434 aa18.34■□□□□ 0.53
TRIM54-204ENST00000488321 MROH7-TTC4A0A0A0MT08 1334 aa18.33■□□□□ 0.53
TRIM54-204ENST00000488321 GAKO14976 1311 aa18.33■□□□□ 0.53
TRIM54-204ENST00000488321 USP2O75604 605 aaPredicted RBP18.33■□□□□ 0.52
TRIM54-204ENST00000488321 BTDP43251 543 aa18.33■□□□□ 0.52
TRIM54-204ENST00000488321 ZAP70P43403 619 aa18.33■□□□□ 0.52
TRIM54-204ENST00000488321 GSTO1P78417 241 aa18.33■□□□□ 0.52
TRIM54-204ENST00000488321 SLC10A4Q96EP9 437 aa18.33■□□□□ 0.52
TRIM54-204ENST00000488321 ZNF512BQ96KM6 892 aaPredicted RBP18.33■□□□□ 0.52
TRIM54-204ENST00000488321 POLR2AP24928 1970 aaKnown RBP18.33■□□□□ 0.52
TRIM54-204ENST00000488321 LDHCP07864 332 aa18.32■□□□□ 0.52
TRIM54-204ENST00000488321 IFIT2P09913 472 aaKnown RBP18.32■□□□□ 0.52
TRIM54-204ENST00000488321 LBX1P52954 281 aa18.32■□□□□ 0.52
TRIM54-204ENST00000488321 NFIAQ12857 509 aa18.32■□□□□ 0.52
TRIM54-204ENST00000488321 MAP3K11Q16584 847 aa18.32■□□□□ 0.52
TRIM54-204ENST00000488321 NSUN4Q96CB9 384 aaKnown RBP18.32■□□□□ 0.52
TRIM54-204ENST00000488321 CLMNQ96JQ2 1002 aa18.32■□□□□ 0.52
TRIM54-204ENST00000488321 TSKSQ9UJT2 592 aa18.32■□□□□ 0.52
TRIM54-204ENST00000488321 THSD7BQ9C0I4 1608 aa18.31■□□□□ 0.52
TRIM54-204ENST00000488321 CYP2E1P05181 493 aaPredicted RBP18.31■□□□□ 0.52
TRIM54-204ENST00000488321 HSPA8P11142 646 aaKnown RBP18.31■□□□□ 0.52
TRIM54-204ENST00000488321 COL13A1Q5TAT6 717 aaPredicted RBP18.31■□□□□ 0.52
TRIM54-204ENST00000488321 ANKRD13AQ8IZ07 590 aa18.31■□□□□ 0.52
TRIM54-204ENST00000488321 FAM151AQ8WW52 585 aa18.31■□□□□ 0.52
TRIM54-204ENST00000488321 HOOK2Q96ED9 719 aa18.31■□□□□ 0.52
TRIM54-204ENST00000488321 FAM163AQ96GL9 167 aaPredicted RBP18.31■□□□□ 0.52
TRIM54-204ENST00000488321 CA12O43570 354 aa18.3■□□□□ 0.52
TRIM54-204ENST00000488321 NAA16Q6N069 864 aaPredicted RBP18.3■□□□□ 0.52
TRIM54-204ENST00000488321 ZNF384Q8TF68 577 aa18.3■□□□□ 0.52
TRIM54-204ENST00000488321 CSRNP1Q96S65 589 aa18.3■□□□□ 0.52
TRIM54-204ENST00000488321 CRBNQ96SW2 442 aa18.3■□□□□ 0.52
TRIM54-204ENST00000488321 FAM198AQ9UFP1 575 aa18.3■□□□□ 0.52
TRIM54-204ENST00000488321 GPR75-ASB3A0A0A6YYF3 556 aa18.29■□□□□ 0.52
TRIM54-204ENST00000488321 RGS3P49796 1198 aa18.29■□□□□ 0.52
TRIM54-204ENST00000488321 PICALMQ13492 652 aa18.29■□□□□ 0.52
TRIM54-204ENST00000488321 NOL10Q9BSC4 688 aaKnown RBP18.29■□□□□ 0.52
TRIM54-204ENST00000488321 LRRCC1Q9C099 1032 aa18.29■□□□□ 0.52
TRIM54-204ENST00000488321 PIH1D3Q9NQM4 214 aaKnown RBP18.29■□□□□ 0.52
TRIM54-204ENST00000488321 NDUFB9Q9Y6M9 179 aa18.29■□□□□ 0.52
TRIM54-204ENST00000488321 UNCXA6NJT0 531 aa18.28■□□□□ 0.52
TRIM54-204ENST00000488321 IDH1O75874 414 aaKnown RBP18.28■□□□□ 0.52
TRIM54-204ENST00000488321 SPRYD7Q5W111 196 aa18.28■□□□□ 0.52
TRIM54-204ENST00000488321 DCAF15Q66K64 600 aa18.28■□□□□ 0.52
TRIM54-204ENST00000488321 MIGA2Q7L4E1 593 aa18.28■□□□□ 0.52
TRIM54-204ENST00000488321 ZSCAN29Q8IWY8 852 aaPredicted RBP18.28■□□□□ 0.52
TRIM54-204ENST00000488321 REM2Q8IYK8 340 aaPredicted RBP18.28■□□□□ 0.52
TRIM54-204ENST00000488321 ELP3Q9H9T3 547 aa18.28■□□□□ 0.52
TRIM54-204ENST00000488321 RPAP1Q9BWH6 1393 aaPredicted RBP18.28■□□□□ 0.52
TRIM54-204ENST00000488321 ENTPD3O75355 529 aa18.27■□□□□ 0.52
TRIM54-204ENST00000488321 MAP3K9P80192 1104 aa18.27■□□□□ 0.52
TRIM54-204ENST00000488321 ZFPM1Q8IX07 1006 aa18.27■□□□□ 0.52
TRIM54-204ENST00000488321 WNK4Q96J92 1243 aa18.27■□□□□ 0.52
TRIM54-204ENST00000488321 WRNIP1Q96S55 665 aa18.27■□□□□ 0.52
TRIM54-204ENST00000488321 IDI2Q9BXS1 227 aa18.27■□□□□ 0.52
TRIM54-204ENST00000488321 PRDM10Q9NQV6 1147 aa18.27■□□□□ 0.52
TRIM54-204ENST00000488321 CSADQ9Y600 493 aa18.27■□□□□ 0.52
TRIM54-204ENST00000488321 MYH13Q9UKX3 1938 aa18.27■□□□□ 0.51
TRIM54-204ENST00000488321 ECM29Q5VYK3 1845 aa18.26■□□□□ 0.51
TRIM54-204ENST00000488321 SMARCA5O60264 1052 aaPredicted RBP18.26■□□□□ 0.51
TRIM54-204ENST00000488321 WDHD1O75717 1129 aaPredicted RBP18.26■□□□□ 0.51
TRIM54-204ENST00000488321 TRPA1O75762 1119 aa18.26■□□□□ 0.51
TRIM54-204ENST00000488321 BAG3O95817 575 aa18.26■□□□□ 0.51
TRIM54-204ENST00000488321 RHBDL3P58872 404 aa18.26■□□□□ 0.51
TRIM54-204ENST00000488321 SREBF2Q12772 1141 aa18.26■□□□□ 0.51
TRIM54-204ENST00000488321 VGLL4Q14135 290 aa18.26■□□□□ 0.51
TRIM54-204ENST00000488321 PPP1R3FQ6ZSY5 799 aaPredicted RBP18.26■□□□□ 0.51
TRIM54-204ENST00000488321 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.26■□□□□ 0.51
TRIM54-204ENST00000488321 DNAJC2Q99543 621 aaKnown RBP18.26■□□□□ 0.51
TRIM54-204ENST00000488321 ZNF341Q9BYN7 854 aa18.26■□□□□ 0.51
TRIM54-204ENST00000488321 ANTXR1Q9H6X2 564 aa18.26■□□□□ 0.51
TRIM54-204ENST00000488321 RNF186Q9NXI6 227 aa18.26■□□□□ 0.51
TRIM54-204ENST00000488321 AATFQ9NY61 560 aaKnown RBP eCLIP18.26■□□□□ 0.51
TRIM54-204ENST00000488321 PCDHB15Q9Y5E8 787 aa18.26■□□□□ 0.51
TRIM54-204ENST00000488321 ZBTB48P10074 688 aaPredicted RBP18.25■□□□□ 0.51
TRIM54-204ENST00000488321 TEX11Q8IYF3 940 aa18.25■□□□□ 0.51
TRIM54-204ENST00000488321 DCTPP1Q9H773 170 aa18.25■□□□□ 0.51
TRIM54-204ENST00000488321 DDX4Q9NQI0 724 aaKnown RBP18.25■□□□□ 0.51
TRIM54-204ENST00000488321 CYP7A1P22680 504 aa18.24■□□□□ 0.51
TRIM54-204ENST00000488321 MAP3K12Q12852 859 aa18.24■□□□□ 0.51
TRIM54-204ENST00000488321 TNS4Q8IZW8 715 aa18.24■□□□□ 0.51
TRIM54-204ENST00000488321 SH3RF3Q8TEJ3 882 aaPredicted RBP18.24■□□□□ 0.51
TRIM54-204ENST00000488321 ZKSCAN4Q969J2 545 aaPredicted RBP18.24■□□□□ 0.51
TRIM54-204ENST00000488321 OPTNQ96CV9 577 aa18.24■□□□□ 0.51
TRIM54-204ENST00000488321 SAGE1Q9NXZ1 904 aa18.24■□□□□ 0.51
TRIM54-204ENST00000488321 RFX7Q2KHR2 1363 aa18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms