RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 AK2P54819 239 aa16.89■□□□□ 0.29
CUX1-209ENST00000487284 CXCL9Q07325 125 aa16.89■□□□□ 0.29
CUX1-209ENST00000487284 DZIP1Q86YF9 867 aaKnown RBP16.89■□□□□ 0.29
CUX1-209ENST00000487284 PSMD14O00487 310 aa16.88■□□□□ 0.29
CUX1-209ENST00000487284 CPA1P15085 419 aa16.88■□□□□ 0.29
CUX1-209ENST00000487284 NAA16Q6N069 864 aaPredicted RBP16.88■□□□□ 0.29
CUX1-209ENST00000487284 BLOC1S2Q6QNY1 142 aa16.88■□□□□ 0.29
CUX1-209ENST00000487284 ADGRA1Q86SQ6 560 aa16.88■□□□□ 0.29
CUX1-209ENST00000487284 ALDH8A1Q9H2A2 487 aaPredicted RBP16.88■□□□□ 0.29
CUX1-209ENST00000487284 FOXD4L1Q9NU39 408 aa16.88■□□□□ 0.29
CUX1-209ENST00000487284 PDRG1Q9NUG6 133 aa16.88■□□□□ 0.29
CUX1-209ENST00000487284 ADAMTSL1Q8N6G6 1762 aa16.87■□□□□ 0.29
CUX1-209ENST00000487284 F8W031 263 aaPredicted RBP16.87■□□□□ 0.29
CUX1-209ENST00000487284 FZD9O00144 591 aa16.87■□□□□ 0.29
CUX1-209ENST00000487284 CYP7A1P22680 504 aa16.87■□□□□ 0.29
CUX1-209ENST00000487284 RPS6KB1P23443 525 aa16.87■□□□□ 0.29
CUX1-209ENST00000487284 FKBP1AP62942 108 aaKnown RBP16.87■□□□□ 0.29
CUX1-209ENST00000487284 DIXDC1Q155Q3 683 aa16.87■□□□□ 0.29
CUX1-209ENST00000487284 NFKBIBQ15653 356 aa16.87■□□□□ 0.29
CUX1-209ENST00000487284 INTS4Q96HW7 963 aaKnown RBP16.87■□□□□ 0.29
CUX1-209ENST00000487284 CWC22Q9HCG8 908 aaKnown RBP16.87■□□□□ 0.29
CUX1-209ENST00000487284 CTNNA3Q9UI47 895 aa16.87■□□□□ 0.29
CUX1-209ENST00000487284 LIMCH1Q9UPQ0 1083 aa16.87■□□□□ 0.29
CUX1-209ENST00000487284 GRIN3BO60391 1043 aa16.86■□□□□ 0.29
CUX1-209ENST00000487284 VIL1P09327 827 aaKnown RBP16.86■□□□□ 0.29
CUX1-209ENST00000487284 CIAPIN1Q6FI81 312 aa16.86■□□□□ 0.29
CUX1-209ENST00000487284 RSBN1LQ6PCB5 846 aaPredicted RBP16.86■□□□□ 0.29
CUX1-209ENST00000487284 KIAA0825Q8IV33 1275 aa16.86■□□□□ 0.29
CUX1-209ENST00000487284 RNF181Q9P0P0 153 aa16.86■□□□□ 0.29
CUX1-209ENST00000487284 TTF2Q9UNY4 1162 aaKnown RBP16.86■□□□□ 0.29
CUX1-209ENST00000487284 SUGT1Q9Y2Z0 365 aa16.86■□□□□ 0.29
CUX1-209ENST00000487284 COL9A3Q14050 684 aaPredicted RBP16.85■□□□□ 0.29
CUX1-209ENST00000487284 NBR1Q14596 966 aa16.85■□□□□ 0.29
CUX1-209ENST00000487284 STOX1Q6ZVD7 989 aa16.85■□□□□ 0.29
CUX1-209ENST00000487284 NOL8Q76FK4 1167 aaKnown RBP16.85■□□□□ 0.29
CUX1-209ENST00000487284 MIGA1Q8NAN2 632 aa16.85■□□□□ 0.29
CUX1-209ENST00000487284 NEK1Q96PY6 1258 aa16.85■□□□□ 0.29
CUX1-209ENST00000487284 ZBTB12Q9Y330 459 aaPredicted RBP16.85■□□□□ 0.29
CUX1-209ENST00000487284 ZMYM6O95789 1325 aa16.85■□□□□ 0.29
CUX1-209ENST00000487284 BAZ2AQ9UIF9 1905 aaKnown RBP16.85■□□□□ 0.29
CUX1-209ENST00000487284 IGSF3O75054 1194 aa16.85■□□□□ 0.29
CUX1-209ENST00000487284 EIF6P56537 245 aaKnown RBP16.85■□□□□ 0.29
CUX1-209ENST00000487284 STRBPQ96SI9 672 aaKnown RBP16.85■□□□□ 0.29
CUX1-209ENST00000487284 LAMB1P07942 1786 aa16.85■□□□□ 0.29
CUX1-209ENST00000487284 MYO3BQ8WXR4 1341 aa16.84■□□□□ 0.29
CUX1-209ENST00000487284 ZNF541Q9H0D2 1346 aa16.84■□□□□ 0.29
CUX1-209ENST00000487284 FGAP02671 866 aa16.84■□□□□ 0.29
CUX1-209ENST00000487284 SCNN1DP51172 638 aa16.84■□□□□ 0.29
CUX1-209ENST00000487284 RAB3GAP1Q15042 981 aa16.84■□□□□ 0.29
CUX1-209ENST00000487284 C9orf131Q5VYM1 1079 aa16.84■□□□□ 0.29
CUX1-209ENST00000487284 AIDAQ96BJ3 306 aa16.84■□□□□ 0.29
CUX1-209ENST00000487284 ZSCAN31Q96LW9 406 aaPredicted RBP16.84■□□□□ 0.29
CUX1-209ENST00000487284 GMLQ99445 158 aa16.84■□□□□ 0.29
CUX1-209ENST00000487284 MROH7-TTC4A0A0A0MT08 1334 aa16.83■□□□□ 0.29
CUX1-209ENST00000487284 CDK5RAP2Q96SN8 1893 aa16.83■□□□□ 0.29
CUX1-209ENST00000487284 MBD4O95243 580 aa16.83■□□□□ 0.28
CUX1-209ENST00000487284 HMGB1P09429 215 aaKnown RBP16.83■□□□□ 0.28
CUX1-209ENST00000487284 GSTO1P78417 241 aa16.83■□□□□ 0.28
CUX1-209ENST00000487284 TNIP1Q15025 636 aa16.83■□□□□ 0.28
CUX1-209ENST00000487284 ANKRD1Q15327 319 aa16.83■□□□□ 0.28
CUX1-209ENST00000487284 ALX1Q15699 326 aa16.83■□□□□ 0.28
CUX1-209ENST00000487284 IMMTQ16891 758 aaKnown RBP16.83■□□□□ 0.28
CUX1-209ENST00000487284 TMED8Q6PL24 325 aaPredicted RBP16.83■□□□□ 0.28
CUX1-209ENST00000487284 SH2B1Q9NRF2 756 aaPredicted RBP16.83■□□□□ 0.28
CUX1-209ENST00000487284 E7EWF7 191 aa16.82■□□□□ 0.28
CUX1-209ENST00000487284 DYNLL1P63167 89 aaKnown RBP16.82■□□□□ 0.28
CUX1-209ENST00000487284 LCORLQ8N3X6 602 aa16.82■□□□□ 0.28
CUX1-209ENST00000487284 ARMT1Q9H993 441 aa16.82■□□□□ 0.28
CUX1-209ENST00000487284 AATFQ9NY61 560 aaKnown RBP eCLIP16.82■□□□□ 0.28
CUX1-209ENST00000487284 GJA3Q9Y6H8 435 aa16.82■□□□□ 0.28
CUX1-209ENST00000487284 GAKO14976 1311 aa16.82■□□□□ 0.28
CUX1-209ENST00000487284 LDHCP07864 332 aa16.81■□□□□ 0.28
CUX1-209ENST00000487284 TOB2Q14106 344 aaPredicted RBP16.81■□□□□ 0.28
CUX1-209ENST00000487284 AGBL3Q8NEM8 1001 aa16.81■□□□□ 0.28
CUX1-209ENST00000487284 RIOK1Q9BRS2 568 aaKnown RBP16.81■□□□□ 0.28
CUX1-209ENST00000487284 DAGLAQ9Y4D2 1042 aa16.81■□□□□ 0.28
CUX1-209ENST00000487284 MAGEB6P1A0A0J9YX57 407 aa16.81■□□□□ 0.28
CUX1-209ENST00000487284 LARGE1O95461 756 aa16.81■□□□□ 0.28
CUX1-209ENST00000487284 GNAT2P19087 354 aa16.81■□□□□ 0.28
CUX1-209ENST00000487284 NUCB2P80303 420 aa16.81■□□□□ 0.28
CUX1-209ENST00000487284 SLF2Q8IX21 1173 aa16.81■□□□□ 0.28
CUX1-209ENST00000487284 TEKT1Q969V4 418 aa16.81■□□□□ 0.28
CUX1-209ENST00000487284 FAM163AQ96GL9 167 aaPredicted RBP16.81■□□□□ 0.28
CUX1-209ENST00000487284 PATL2C9JE40 543 aaKnown RBP16.8■□□□□ 0.28
CUX1-209ENST00000487284 BTDP43251 543 aa16.8■□□□□ 0.28
CUX1-209ENST00000487284 CRKP46108 304 aa16.8■□□□□ 0.28
CUX1-209ENST00000487284 HHIPL2Q6UWX4 724 aa16.8■□□□□ 0.28
CUX1-209ENST00000487284 DHX32Q7L7V1 743 aaKnown RBP16.8■□□□□ 0.28
CUX1-209ENST00000487284 TCEANC2Q96MN5 208 aa16.8■□□□□ 0.28
CUX1-209ENST00000487284 EPB41L4AQ9HCS5 686 aaPredicted RBP16.8■□□□□ 0.28
CUX1-209ENST00000487284 PCDHAC2Q9Y5I4 1007 aa16.8■□□□□ 0.28
CUX1-209ENST00000487284 GPR75-ASB3A0A0A6YYF3 556 aa16.79■□□□□ 0.28
CUX1-209ENST00000487284 GMPSP49915 693 aaPredicted RBP16.79■□□□□ 0.28
CUX1-209ENST00000487284 HDLBPQ00341 1268 aaKnown RBP16.79■□□□□ 0.28
CUX1-209ENST00000487284 EXOSC10Q01780 885 aaKnown RBP16.79■□□□□ 0.28
CUX1-209ENST00000487284 TNPO1Q92973 898 aaKnown RBP16.79■□□□□ 0.28
CUX1-209ENST00000487284 LARP6Q9BRS8 491 aaKnown RBP16.79■□□□□ 0.28
CUX1-209ENST00000487284 AGXT2Q9BYV1 514 aa16.79■□□□□ 0.28
CUX1-209ENST00000487284 TPCN1Q9ULQ1 816 aa16.79■□□□□ 0.28
CUX1-209ENST00000487284 SHTN1A0MZ66 631 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms