RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 XAGE2Q96GT9 111 aa9.83□□□□□ -0.84
USP40-216ENST00000485943 FAM84BQ96KN1 310 aaPredicted RBP9.83□□□□□ -0.84
USP40-216ENST00000485943 GGA3Q9NZ52 723 aa9.83□□□□□ -0.84
USP40-216ENST00000485943 LRP2BPQ9P2M1 347 aa9.83□□□□□ -0.84
USP40-216ENST00000485943 SUPT16HQ9Y5B9 1047 aaKnown RBP9.83□□□□□ -0.84
USP40-216ENST00000485943 COL4A5P29400 1685 aa9.83□□□□□ -0.84
USP40-216ENST00000485943 PSME4Q14997 1843 aa9.82□□□□□ -0.84
USP40-216ENST00000485943 AK9Q5TCS8 1911 aa9.82□□□□□ -0.84
USP40-216ENST00000485943 WTIPA6NIX2 430 aaPredicted RBP9.82□□□□□ -0.84
USP40-216ENST00000485943 TMEM88BA6NKF7 163 aa9.82□□□□□ -0.84
USP40-216ENST00000485943 FKBP1AP62942 108 aaKnown RBP9.82□□□□□ -0.84
USP40-216ENST00000485943 DACT2Q5SW24 774 aa9.82□□□□□ -0.84
USP40-216ENST00000485943 C20orf194Q5TEA3 1177 aa9.82□□□□□ -0.84
USP40-216ENST00000485943 ANGEL2Q5VTE6 544 aaKnown RBP9.82□□□□□ -0.84
USP40-216ENST00000485943 ERICH6Q7L0X2 663 aa9.82□□□□□ -0.84
USP40-216ENST00000485943 ATG9AQ7Z3C6 839 aa9.82□□□□□ -0.84
USP40-216ENST00000485943 APOBEC3FQ8IUX4 373 aaKnown RBP9.82□□□□□ -0.84
USP40-216ENST00000485943 C2orf69Q8N8R5 385 aa9.82□□□□□ -0.84
USP40-216ENST00000485943 TDRD7Q8NHU6 1098 aaKnown RBP9.82□□□□□ -0.84
USP40-216ENST00000485943 TRPM4Q8TD43 1214 aa9.82□□□□□ -0.84
USP40-216ENST00000485943 MXD3Q9BW11 206 aa9.82□□□□□ -0.84
USP40-216ENST00000485943 RAI14Q9P0K7 980 aa9.82□□□□□ -0.84
USP40-216ENST00000485943 GTF3C3Q9Y5Q9 886 aa9.82□□□□□ -0.84
USP40-216ENST00000485943 SCN9AQ15858 1988 aa9.82□□□□□ -0.84
USP40-216ENST00000485943 POTECB2RU33 542 aa9.81□□□□□ -0.84
USP40-216ENST00000485943 TBC1D12O60347 775 aa9.81□□□□□ -0.84
USP40-216ENST00000485943 CELF2O95319 508 aaKnown RBP9.81□□□□□ -0.84
USP40-216ENST00000485943 POTEJP0CG39 1038 aa9.81□□□□□ -0.84
USP40-216ENST00000485943 GSTO1P78417 241 aa9.81□□□□□ -0.84
USP40-216ENST00000485943 CFAP100Q494V2 611 aa9.81□□□□□ -0.84
USP40-216ENST00000485943 TNNI3KQ59H18 835 aa9.81□□□□□ -0.84
USP40-216ENST00000485943 CCDC102BQ68D86 513 aa9.81□□□□□ -0.84
USP40-216ENST00000485943 FBXO33Q7Z6M2 555 aa9.81□□□□□ -0.84
USP40-216ENST00000485943 USP48Q86UV5 1035 aa9.81□□□□□ -0.84
USP40-216ENST00000485943 CRBNQ96SW2 442 aa9.81□□□□□ -0.84
USP40-216ENST00000485943 LRRCC1Q9C099 1032 aa9.81□□□□□ -0.84
USP40-216ENST00000485943 IL1RAPL2Q9NP60 686 aa9.81□□□□□ -0.84
USP40-216ENST00000485943 ZBTB40Q9NUA8 1239 aa9.81□□□□□ -0.84
USP40-216ENST00000485943 FPGT-TNNI3KV9GXZ4 949 aa9.81□□□□□ -0.84
USP40-216ENST00000485943 LDHCP07864 332 aa9.8□□□□□ -0.84
USP40-216ENST00000485943 FGFR2P21802 821 aa9.8□□□□□ -0.84
USP40-216ENST00000485943 ADORA1P30542 326 aa9.8□□□□□ -0.84
USP40-216ENST00000485943 PHKA1P46020 1223 aa9.8□□□□□ -0.84
USP40-216ENST00000485943 AAMPQ13685 434 aa9.8□□□□□ -0.84
USP40-216ENST00000485943 VGLL2Q8N8G2 317 aa9.8□□□□□ -0.84
USP40-216ENST00000485943 BEGAINQ9BUH8 593 aa9.8□□□□□ -0.84
USP40-216ENST00000485943 GLIS2Q9BZE0 524 aaPredicted RBP9.8□□□□□ -0.84
USP40-216ENST00000485943 CCDC8Q9H0W5 538 aaPredicted RBP9.8□□□□□ -0.84
USP40-216ENST00000485943 RWDD1Q9H446 243 aaPredicted RBP9.8□□□□□ -0.84
USP40-216ENST00000485943 GPR108Q9NPR9 543 aa9.8□□□□□ -0.84
USP40-216ENST00000485943 SUGT1Q9Y2Z0 365 aa9.8□□□□□ -0.84
USP40-216ENST00000485943 FAM205AQ6ZU69 1335 aa9.8□□□□□ -0.84
USP40-216ENST00000485943 TRPM7Q96QT4 1865 aa9.79□□□□□ -0.84
USP40-216ENST00000485943 SHTN1A0MZ66 631 aa9.79□□□□□ -0.84
USP40-216ENST00000485943 CLRN2A0PK11 232 aa9.79□□□□□ -0.84
USP40-216ENST00000485943 ECE1P42892 770 aa9.79□□□□□ -0.84
USP40-216ENST00000485943 CRKP46108 304 aa9.79□□□□□ -0.84
USP40-216ENST00000485943 ZNF280AP59817 542 aaPredicted RBP9.79□□□□□ -0.84
USP40-216ENST00000485943 KRI1Q8N9T8 703 aaKnown RBP9.79□□□□□ -0.84
USP40-216ENST00000485943 SPATA5Q8NB90 893 aa9.79□□□□□ -0.84
USP40-216ENST00000485943 RHPN1Q8TCX5 695 aa9.79□□□□□ -0.84
USP40-216ENST00000485943 HOOK2Q96ED9 719 aa9.79□□□□□ -0.84
USP40-216ENST00000485943 DNAJC2Q99543 621 aaKnown RBP9.79□□□□□ -0.84
USP40-216ENST00000485943 SERPINA10Q9UK55 444 aa9.79□□□□□ -0.84
USP40-216ENST00000485943 ZNF609O15014 1411 aa9.79□□□□□ -0.84
USP40-216ENST00000485943 POLR2AP24928 1970 aaKnown RBP9.79□□□□□ -0.84
USP40-216ENST00000485943 WNT10BO00744 389 aa9.78□□□□□ -0.84
USP40-216ENST00000485943 PPP1R12BO60237 982 aaPredicted RBP9.78□□□□□ -0.84
USP40-216ENST00000485943 BAG3O95817 575 aa9.78□□□□□ -0.84
USP40-216ENST00000485943 TTF1Q15361 905 aaPredicted RBP9.78□□□□□ -0.84
USP40-216ENST00000485943 NBPF9Q3BBW0 867 aa9.78□□□□□ -0.84
USP40-216ENST00000485943 SUPT20HL1Q3ZLR7 823 aa9.78□□□□□ -0.84
USP40-216ENST00000485943 ARMC9Q7Z3E5 817 aa9.78□□□□□ -0.84
USP40-216ENST00000485943 ZSCAN29Q8IWY8 852 aaPredicted RBP9.78□□□□□ -0.84
USP40-216ENST00000485943 AIDAQ96BJ3 306 aa9.78□□□□□ -0.84
USP40-216ENST00000485943 TRIM34Q9BYJ4 488 aa9.78□□□□□ -0.84
USP40-216ENST00000485943 MKRN1Q9UHC7 482 aaKnown RBP9.78□□□□□ -0.84
USP40-216ENST00000485943 NOP58Q9Y2X3 529 aaKnown RBP9.78□□□□□ -0.84
USP40-216ENST00000485943 PITPNM2Q9BZ72 1349 aa9.78□□□□□ -0.84
USP40-216ENST00000485943 ARAP2Q8WZ64 1704 aa9.77□□□□□ -0.85
USP40-216ENST00000485943 TCP10L2B9ZVM9 353 aa9.77□□□□□ -0.85
USP40-216ENST00000485943 ADM5C9JUS6 153 aa9.77□□□□□ -0.85
USP40-216ENST00000485943 TRAF5O00463 557 aa9.77□□□□□ -0.85
USP40-216ENST00000485943 TRIM66O15016 1216 aa9.77□□□□□ -0.85
USP40-216ENST00000485943 IDH1O75874 414 aaKnown RBP9.77□□□□□ -0.85
USP40-216ENST00000485943 IRX6P78412 446 aaPredicted RBP9.77□□□□□ -0.85
USP40-216ENST00000485943 MAP3K12Q12852 859 aa9.77□□□□□ -0.85
USP40-216ENST00000485943 RASGRF1Q13972 1273 aa9.77□□□□□ -0.85
USP40-216ENST00000485943 PRKG1Q13976 671 aa9.77□□□□□ -0.85
USP40-216ENST00000485943 DEFB115Q30KQ5 88 aa9.77□□□□□ -0.85
USP40-216ENST00000485943 LRRFIP1Q32MZ4 808 aaKnown RBP9.77□□□□□ -0.85
USP40-216ENST00000485943 DBNDD2Q9BQY9 259 aa9.77□□□□□ -0.85
USP40-216ENST00000485943 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.77□□□□□ -0.85
USP40-216ENST00000485943 GBA2Q9HCG7 927 aaPredicted RBP9.77□□□□□ -0.85
USP40-216ENST00000485943 SNRKQ9NRH2 765 aa9.77□□□□□ -0.85
USP40-216ENST00000485943 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.77□□□□□ -0.85
USP40-216ENST00000485943 ERC2O15083 957 aa9.76□□□□□ -0.85
USP40-216ENST00000485943 HIRAP54198 1017 aaPredicted RBP9.76□□□□□ -0.85
USP40-216ENST00000485943 HUNKP57058 714 aa9.76□□□□□ -0.85
USP40-216ENST00000485943 HDLBPQ00341 1268 aaKnown RBP9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms