RNA–Protein interactions for RNA: ENST00000480210.1

USP54-212, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 640 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-212ENST00000480210 RNF113AO15541 343 aaKnown RBP9.96□□□□□ -0.82
USP54-212ENST00000480210 CYP7A1P22680 504 aa9.96□□□□□ -0.82
USP54-212ENST00000480210 PDE4AP27815 886 aa9.96□□□□□ -0.82
USP54-212ENST00000480210 ADD2P35612 726 aa9.96□□□□□ -0.82
USP54-212ENST00000480210 HIRAP54198 1017 aaPredicted RBP9.96□□□□□ -0.82
USP54-212ENST00000480210 GRIK5Q16478 980 aa9.96□□□□□ -0.82
USP54-212ENST00000480210 SPDYE2Q495Y8 402 aa9.96□□□□□ -0.82
USP54-212ENST00000480210 TTC22Q5TAA0 569 aa9.96□□□□□ -0.82
USP54-212ENST00000480210 APOBEC3HQ6NTF7 200 aaKnown RBP9.96□□□□□ -0.82
USP54-212ENST00000480210 FAM83AQ86UY5 434 aa9.96□□□□□ -0.82
USP54-212ENST00000480210 MAGEB6Q8N7X4 407 aa9.96□□□□□ -0.82
USP54-212ENST00000480210 HOOK2Q96ED9 719 aa9.96□□□□□ -0.82
USP54-212ENST00000480210 PRMT6Q96LA8 375 aaPredicted RBP9.96□□□□□ -0.82
USP54-212ENST00000480210 FSD1Q9BTV5 496 aa9.96□□□□□ -0.82
USP54-212ENST00000480210 DAGLAQ9Y4D2 1042 aa9.96□□□□□ -0.82
USP54-212ENST00000480210 FOCADQ5VW36 1801 aa9.96□□□□□ -0.82
USP54-212ENST00000480210 PDE6AP16499 860 aa9.95□□□□□ -0.82
USP54-212ENST00000480210 MFAP1P55081 439 aaKnown RBP9.95□□□□□ -0.82
USP54-212ENST00000480210 NBPF9Q3BBW0 867 aa9.95□□□□□ -0.82
USP54-212ENST00000480210 SULF1Q8IWU6 871 aa9.95□□□□□ -0.82
USP54-212ENST00000480210 TRPM4Q8TD43 1214 aa9.95□□□□□ -0.82
USP54-212ENST00000480210 APPBP2Q92624 585 aa9.95□□□□□ -0.82
USP54-212ENST00000480210 RILPL2Q969X0 211 aa9.95□□□□□ -0.82
USP54-212ENST00000480210 IDI2Q9BXS1 227 aa9.95□□□□□ -0.82
USP54-212ENST00000480210 HELLSQ9NRZ9 838 aa9.95□□□□□ -0.82
USP54-212ENST00000480210 USP40Q9NVE5 1235 aa9.95□□□□□ -0.82
USP54-212ENST00000480210 ZNF70Q9UC06 446 aaPredicted RBP9.95□□□□□ -0.82
USP54-212ENST00000480210 TAOK2Q9UL54 1235 aa9.95□□□□□ -0.82
USP54-212ENST00000480210 CDK5RAP2Q96SN8 1893 aa9.95□□□□□ -0.82
USP54-212ENST00000480210 MYH1P12882 1939 aa9.95□□□□□ -0.82
USP54-212ENST00000480210 RPAP1Q9BWH6 1393 aaPredicted RBP9.94□□□□□ -0.82
USP54-212ENST00000480210 ZNF532Q9HCE3 1301 aa9.94□□□□□ -0.82
USP54-212ENST00000480210 MAGEB6P1A0A0J9YX57 407 aa9.94□□□□□ -0.82
USP54-212ENST00000480210 TCRBV5S4A2TA0A5A2 114 aa9.94□□□□□ -0.82
USP54-212ENST00000480210 SHTN1A0MZ66 631 aa9.94□□□□□ -0.82
USP54-212ENST00000480210 EIF5BO60841 1220 aaKnown RBP9.94□□□□□ -0.82
USP54-212ENST00000480210 ENTPD3O75355 529 aa9.94□□□□□ -0.82
USP54-212ENST00000480210 GNAT2P19087 354 aa9.94□□□□□ -0.82
USP54-212ENST00000480210 BTDP43251 543 aa9.94□□□□□ -0.82
USP54-212ENST00000480210 DIXDC1Q155Q3 683 aa9.94□□□□□ -0.82
USP54-212ENST00000480210 BMP2KLQ5H9B9 411 aa9.94□□□□□ -0.82
USP54-212ENST00000480210 TSHZ3Q63HK5 1081 aa9.94□□□□□ -0.82
USP54-212ENST00000480210 CDC42EP5Q6NZY7 148 aa9.94□□□□□ -0.82
USP54-212ENST00000480210 RUFY2Q8WXA3 655 aa9.94□□□□□ -0.82
USP54-212ENST00000480210 TDRD3Q9H7E2 651 aaKnown RBP9.94□□□□□ -0.82
USP54-212ENST00000480210 NDUFB9Q9Y6M9 179 aa9.94□□□□□ -0.82
USP54-212ENST00000480210 NF2P35240 595 aa9.93□□□□□ -0.82
USP54-212ENST00000480210 SUPT20HL1Q3ZLR7 823 aa9.93□□□□□ -0.82
USP54-212ENST00000480210 ANGEL2Q5VTE6 544 aaKnown RBP9.93□□□□□ -0.82
USP54-212ENST00000480210 ZNF384Q8TF68 577 aa9.93□□□□□ -0.82
USP54-212ENST00000480210 FAM151AQ8WW52 585 aa9.93□□□□□ -0.82
USP54-212ENST00000480210 AIDAQ96BJ3 306 aa9.93□□□□□ -0.82
USP54-212ENST00000480210 EDC3Q96F86 508 aaKnown RBP9.93□□□□□ -0.82
USP54-212ENST00000480210 DDRGK1Q96HY6 314 aa9.93□□□□□ -0.82
USP54-212ENST00000480210 CRNKL1Q9BZJ0 848 aaKnown RBP9.93□□□□□ -0.82
USP54-212ENST00000480210 DHX36Q9H2U1 1008 aaKnown RBP9.93□□□□□ -0.82
USP54-212ENST00000480210 AATFQ9NY61 560 aaKnown RBP eCLIP9.93□□□□□ -0.82
USP54-212ENST00000480210 GGA3Q9NZ52 723 aa9.93□□□□□ -0.82
USP54-212ENST00000480210 UNCXA6NJT0 531 aa9.92□□□□□ -0.82
USP54-212ENST00000480210 EGFRP00533 1210 aa9.92□□□□□ -0.82
USP54-212ENST00000480210 SDSP20132 328 aa9.92□□□□□ -0.82
USP54-212ENST00000480210 RHBDL3P58872 404 aa9.92□□□□□ -0.82
USP54-212ENST00000480210 MCMDC2Q4G0Z9 681 aa9.92□□□□□ -0.82
USP54-212ENST00000480210 ZMYM1Q5SVZ6 1142 aa9.92□□□□□ -0.82
USP54-212ENST00000480210 GIMAP6Q6P9H5 292 aa9.92□□□□□ -0.82
USP54-212ENST00000480210 CASC1Q6TDU7 716 aa9.92□□□□□ -0.82
USP54-212ENST00000480210 KRT26Q7Z3Y9 468 aa9.92□□□□□ -0.82
USP54-212ENST00000480210 TEX11Q8IYF3 940 aa9.92□□□□□ -0.82
USP54-212ENST00000480210 RIOK1Q9BRS2 568 aaKnown RBP9.92□□□□□ -0.82
USP54-212ENST00000480210 DEFB129Q9H1M3 183 aa9.92□□□□□ -0.82
USP54-212ENST00000480210 VEZTQ9HBM0 779 aa9.92□□□□□ -0.82
USP54-212ENST00000480210 ATP8A2Q9NTI2 1148 aa9.92□□□□□ -0.82
USP54-212ENST00000480210 COL2A1P02458 1487 aaPredicted RBP9.91□□□□□ -0.82
USP54-212ENST00000480210 RAD50Q92878 1312 aa9.91□□□□□ -0.82
USP54-212ENST00000480210 ITGBL1O95965 494 aaPredicted RBP9.91□□□□□ -0.82
USP54-212ENST00000480210 USP5P45974 858 aa9.91□□□□□ -0.82
USP54-212ENST00000480210 RGS3P49796 1198 aa9.91□□□□□ -0.82
USP54-212ENST00000480210 FKBP1BP68106 108 aa9.91□□□□□ -0.82
USP54-212ENST00000480210 AMOTL1Q8IY63 956 aa9.91□□□□□ -0.82
USP54-212ENST00000480210 DIAPH3Q9NSV4 1193 aa9.91□□□□□ -0.82
USP54-212ENST00000480210 CLRN2A0PK11 232 aa9.9□□□□□ -0.82
USP54-212ENST00000480210 PATL2C9JE40 543 aaKnown RBP9.9□□□□□ -0.82
USP54-212ENST00000480210 WDHD1O75717 1129 aaPredicted RBP9.9□□□□□ -0.82
USP54-212ENST00000480210 GSPT1P15170 499 aaKnown RBP9.9□□□□□ -0.82
USP54-212ENST00000480210 RASA3Q14644 834 aa9.9□□□□□ -0.82
USP54-212ENST00000480210 DCAF15Q66K64 600 aa9.9□□□□□ -0.82
USP54-212ENST00000480210 MAP1SQ66K74 1059 aaPredicted RBP9.9□□□□□ -0.82
USP54-212ENST00000480210 ADGRA1Q86SQ6 560 aa9.9□□□□□ -0.82
USP54-212ENST00000480210 TTC6Q86TZ1 520 aa9.9□□□□□ -0.82
USP54-212ENST00000480210 USP48Q86UV5 1035 aa9.9□□□□□ -0.82
USP54-212ENST00000480210 FOXP4Q8IVH2 680 aaPredicted RBP9.9□□□□□ -0.82
USP54-212ENST00000480210 OSBP2Q969R2 916 aa9.9□□□□□ -0.82
USP54-212ENST00000480210 STRBPQ96SI9 672 aaKnown RBP9.9□□□□□ -0.82
USP54-212ENST00000480210 NACAP1Q9BZK3 213 aa9.9□□□□□ -0.82
USP54-212ENST00000480210 PUS7LQ9H0K6 701 aaKnown RBP9.9□□□□□ -0.82
USP54-212ENST00000480210 PCDHAC2Q9Y5I4 1007 aa9.9□□□□□ -0.82
USP54-212ENST00000480210 MYH8P13535 1937 aa9.9□□□□□ -0.83
USP54-212ENST00000480210 BAZ2AQ9UIF9 1905 aaKnown RBP9.9□□□□□ -0.83
USP54-212ENST00000480210 PASKQ96RG2 1323 aa9.89□□□□□ -0.83
USP54-212ENST00000480210 TCP10L2B9ZVM9 353 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms