RNA–Protein interactions for RNA: ENST00000479868.6

SEC13-216, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 1 (best)

Gene SEC13, Length 2,374 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-216ENST00000479868 KDM4AO75164 1064 aa15.21■□□□□ 0.03
SEC13-216ENST00000479868 GNAT2P19087 354 aa15.21■□□□□ 0.03
SEC13-216ENST00000479868 CYP7A1P22680 504 aa15.21■□□□□ 0.03
SEC13-216ENST00000479868 METAP2P50579 478 aaKnown RBP eCLIP15.21■□□□□ 0.031e-7■■□□□ 13.6
SEC13-216ENST00000479868 CKAP2LQ8IYA6 745 aa15.21■□□□□ 0.03
SEC13-216ENST00000479868 FBXO18Q8NFZ0 1043 aa15.21■□□□□ 0.03
SEC13-216ENST00000479868 ARHGEF1Q92888 912 aaKnown RBP15.21■□□□□ 0.03
SEC13-216ENST00000479868 TMEM87BQ96K49 555 aa15.21■□□□□ 0.03
SEC13-216ENST00000479868 FAM84BQ96KN1 310 aaPredicted RBP15.21■□□□□ 0.03
SEC13-216ENST00000479868 TNMDQ9H2S6 317 aa15.21■□□□□ 0.03
SEC13-216ENST00000479868 LY9Q9HBG7 655 aa15.21■□□□□ 0.03
SEC13-216ENST00000479868 DDX19AQ9NUU7 478 aaKnown RBP15.21■□□□□ 0.03
SEC13-216ENST00000479868 GNL3LQ9NVN8 582 aaKnown RBP15.21■□□□□ 0.03
SEC13-216ENST00000479868 ZSWIM5Q9P217 1185 aa15.21■□□□□ 0.03
SEC13-216ENST00000479868 USP25Q9UHP3 1055 aa15.21■□□□□ 0.03
SEC13-216ENST00000479868 RTCBQ9Y3I0 505 aaKnown RBP15.21■□□□□ 0.03
SEC13-216ENST00000479868 CACNA1SQ13698 1873 aa15.21■□□□□ 0.03
SEC13-216ENST00000479868 LY75O60449 1722 aa15.21■□□□□ 0.03
SEC13-216ENST00000479868 CCDC192P0DO97 292 aa15.21■□□□□ 0.03
SEC13-216ENST00000479868 KLRK1P26718 216 aa15.21■□□□□ 0.03
SEC13-216ENST00000479868 TDO2P48775 406 aa15.21■□□□□ 0.03
SEC13-216ENST00000479868 AKNAD1Q5T1N1 836 aa15.21■□□□□ 0.03
SEC13-216ENST00000479868 NLRP3Q96P20 1036 aa15.21■□□□□ 0.03
SEC13-216ENST00000479868 CLSTN2Q9H4D0 955 aa15.21■□□□□ 0.03
SEC13-216ENST00000479868 SBF2Q86WG5 1849 aa15.2■□□□□ 0.02
SEC13-216ENST00000479868 CDC27P30260 824 aa15.2■□□□□ 0.02
SEC13-216ENST00000479868 RPS8P62241 208 aaKnown RBP15.2■□□□□ 0.02
SEC13-216ENST00000479868 CAVIN4Q5BKX8 364 aa15.2■□□□□ 0.02
SEC13-216ENST00000479868 MICU3Q86XE3 530 aa15.2■□□□□ 0.02
SEC13-216ENST00000479868 ZNF396Q96N95 335 aaPredicted RBP15.2■□□□□ 0.02
SEC13-216ENST00000479868 NACAP1Q9BZK3 213 aa15.2■□□□□ 0.02
SEC13-216ENST00000479868 RAI14Q9P0K7 980 aa15.2■□□□□ 0.02
SEC13-216ENST00000479868 TMEM67Q5HYA8 995 aa15.2■□□□□ 0.02
SEC13-216ENST00000479868 ATL3Q6DD88 541 aa15.2■□□□□ 0.02
SEC13-216ENST00000479868 SGMS1Q86VZ5 419 aa15.2■□□□□ 0.02
SEC13-216ENST00000479868 VPS37DQ86XT2 251 aa15.2■□□□□ 0.02
SEC13-216ENST00000479868 CCDC144CPQ8IYA2 1237 aa15.2■□□□□ 0.02
SEC13-216ENST00000479868 MYL10Q9BUA6 226 aa15.2■□□□□ 0.02
SEC13-216ENST00000479868 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.2■□□□□ 0.02
SEC13-216ENST00000479868 EP400Q96L91 3159 aa15.2■□□□□ 0.02
SEC13-216ENST00000479868 RBM43Q6ZSC3 357 aaKnown RBP15.19■□□□□ 0.02
SEC13-216ENST00000479868 MFSD6Q6ZSS7 791 aa15.19■□□□□ 0.02
SEC13-216ENST00000479868 STK11IPQ8N1F8 1099 aa15.19■□□□□ 0.02
SEC13-216ENST00000479868 SDR42E1Q8WUS8 393 aa15.19■□□□□ 0.02
SEC13-216ENST00000479868 AIFM3Q96NN9 605 aa15.19■□□□□ 0.02
SEC13-216ENST00000479868 POLR3DP05423 398 aaPredicted RBP15.19■□□□□ 0.02
SEC13-216ENST00000479868 TYRO3Q06418 890 aa15.19■□□□□ 0.02
SEC13-216ENST00000479868 RRP12Q5JTH9 1297 aaKnown RBP15.19■□□□□ 0.02
SEC13-216ENST00000479868 TPTE2Q6XPS3 522 aa15.19■□□□□ 0.02
SEC13-216ENST00000479868 NFXL1Q6ZNB6 911 aa15.19■□□□□ 0.02
SEC13-216ENST00000479868 ZNF384Q8TF68 577 aa15.19■□□□□ 0.02
SEC13-216ENST00000479868 STAG1Q8WVM7 1258 aa15.19■□□□□ 0.02
SEC13-216ENST00000479868 GJD4Q96KN9 370 aaPredicted RBP15.19■□□□□ 0.02
SEC13-216ENST00000479868 GOLPH3LQ9H4A5 285 aa15.19■□□□□ 0.02
SEC13-216ENST00000479868 CNNM2Q9H8M5 875 aa15.19■□□□□ 0.02
SEC13-216ENST00000479868 NOL7Q9UMY1 257 aaKnown RBP15.19■□□□□ 0.02
SEC13-216ENST00000479868 MRVI1Q9Y6F6 885 aa15.19■□□□□ 0.02
SEC13-216ENST00000479868 ECM29Q5VYK3 1845 aa15.19■□□□□ 0.02
SEC13-216ENST00000479868 KIF28PB7ZC32 967 aa15.18■□□□□ 0.02
SEC13-216ENST00000479868 IFIT3O14879 490 aaKnown RBP15.18■□□□□ 0.02
SEC13-216ENST00000479868 ZBTB43O43298 467 aa15.18■□□□□ 0.02
SEC13-216ENST00000479868 LIFRP42702 1097 aa15.18■□□□□ 0.02
SEC13-216ENST00000479868 PHKBQ93100 1093 aa15.18■□□□□ 0.02
SEC13-216ENST00000479868 KRT23Q9C075 422 aa15.18■□□□□ 0.02
SEC13-216ENST00000479868 FAM217BQ9NTX9 383 aaPredicted RBP15.18■□□□□ 0.02
SEC13-216ENST00000479868 MAGEB6P1A0A0J9YX57 407 aa15.18■□□□□ 0.02
SEC13-216ENST00000479868 NTRK3Q16288 839 aa15.18■□□□□ 0.02
SEC13-216ENST00000479868 FBXO33Q7Z6M2 555 aa15.18■□□□□ 0.02
SEC13-216ENST00000479868 CCAR1Q8IX12 1150 aaKnown RBP15.18■□□□□ 0.02
SEC13-216ENST00000479868 RIOK1Q9BRS2 568 aaKnown RBP15.18■□□□□ 0.02
SEC13-216ENST00000479868 TOMM22Q9NS69 142 aa15.18■□□□□ 0.02
SEC13-216ENST00000479868 MYH13Q9UKX3 1938 aa15.18■□□□□ 0.02
SEC13-216ENST00000479868 TNRC6CQ9HCJ0 1690 aaKnown RBP15.17■□□□□ 0.02
SEC13-216ENST00000479868 ADCY5O95622 1261 aa15.17■□□□□ 0.02
SEC13-216ENST00000479868 MSNP26038 577 aaKnown RBP15.17■□□□□ 0.02
SEC13-216ENST00000479868 TM4SF1P30408 202 aa15.17■□□□□ 0.02
SEC13-216ENST00000479868 PPARAQ07869 468 aa15.17■□□□□ 0.02
SEC13-216ENST00000479868 ZKSCAN3Q9BRR0 538 aa15.17■□□□□ 0.02
SEC13-216ENST00000479868 RTEL1Q9NZ71 1219 aa15.17■□□□□ 0.02
SEC13-216ENST00000479868 CCDC39Q9UFE4 941 aa15.17■□□□□ 0.02
SEC13-216ENST00000479868 BAZ2AQ9UIF9 1905 aaKnown RBP15.17■□□□□ 0.02
SEC13-216ENST00000479868 GOLGA8AA7E2F4 631 aa15.17■□□□□ 0.02
SEC13-216ENST00000479868 SMIM22K7EJ46 135 aa15.17■□□□□ 0.02
SEC13-216ENST00000479868 AP5Z1O43299 807 aa15.17■□□□□ 0.02
SEC13-216ENST00000479868 RANBP6O60518 1105 aaKnown RBP15.17■□□□□ 0.02
SEC13-216ENST00000479868 ME1P48163 572 aa15.17■□□□□ 0.02
SEC13-216ENST00000479868 KIF23Q02241 960 aaPredicted RBP15.17■□□□□ 0.02
SEC13-216ENST00000479868 SLC12A7Q9Y666 1083 aa15.17■□□□□ 0.02
SEC13-216ENST00000479868 CLIC4Q9Y696 253 aa15.17■□□□□ 0.02
SEC13-216ENST00000479868 CDKL5O76039 1030 aa15.16■□□□□ 0.02
SEC13-216ENST00000479868 DYNLL1P63167 89 aaKnown RBP15.16■□□□□ 0.02
SEC13-216ENST00000479868 SNW1Q13573 536 aaKnown RBP15.16■□□□□ 0.02
SEC13-216ENST00000479868 MEX3CQ5U5Q3 659 aaKnown RBP15.16■□□□□ 0.02
SEC13-216ENST00000479868 MYSM1Q5VVJ2 828 aa15.16■□□□□ 0.02
SEC13-216ENST00000479868 ALG1Q9BT22 464 aa15.16■□□□□ 0.02
SEC13-216ENST00000479868 TFCP2L1Q9NZI6 479 aa15.16■□□□□ 0.02
SEC13-216ENST00000479868 CCDC69A6NI79 296 aa15.16■□□□□ 0.02
SEC13-216ENST00000479868 UBE2Q2LH0YL09 131 aa15.16■□□□□ 0.02
SEC13-216ENST00000479868 RFC4P35249 363 aa15.16■□□□□ 0.02
SEC13-216ENST00000479868 BRAPQ7Z569 592 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms