RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 MRPL42Q9Y6G3 142 aaKnown RBP7.59□□□□□ -1.19
UPF3B-203ENST00000478840 ELOA3CA0A087WX78 387 aaPredicted RBP7.58□□□□□ -1.2
UPF3B-203ENST00000478840 ELOA3DA6NLF2 546 aaPredicted RBP7.58□□□□□ -1.2
UPF3B-203ENST00000478840 SOX1O00570 391 aaPredicted RBP7.58□□□□□ -1.2
UPF3B-203ENST00000478840 BPNT1O95861 308 aa7.58□□□□□ -1.2
UPF3B-203ENST00000478840 EPHA1P21709 976 aa7.58□□□□□ -1.2
UPF3B-203ENST00000478840 CDC27P30260 824 aa7.58□□□□□ -1.2
UPF3B-203ENST00000478840 MCM4P33991 863 aa7.58□□□□□ -1.2
UPF3B-203ENST00000478840 IKBKEQ14164 716 aa7.58□□□□□ -1.2
UPF3B-203ENST00000478840 GAS6Q14393 721 aa7.58□□□□□ -1.2
UPF3B-203ENST00000478840 ELOA3BQ3SY89 546 aa7.58□□□□□ -1.2
UPF3B-203ENST00000478840 FCHSD1Q86WN1 690 aa7.58□□□□□ -1.2
UPF3B-203ENST00000478840 ELOA3Q8NG57 546 aa7.58□□□□□ -1.2
UPF3B-203ENST00000478840 RNPC3Q96LT9 517 aaKnown RBP7.58□□□□□ -1.2
UPF3B-203ENST00000478840 DEPDC7Q96QD5 511 aa7.58□□□□□ -1.2
UPF3B-203ENST00000478840 LACRTQ9GZZ8 138 aa7.58□□□□□ -1.2
UPF3B-203ENST00000478840 ERBB4Q15303 1308 aa7.57□□□□□ -1.2
UPF3B-203ENST00000478840 FAM177BA6PVY3 158 aa7.57□□□□□ -1.2
UPF3B-203ENST00000478840 H3BRJ5 948 aa7.57□□□□□ -1.2
UPF3B-203ENST00000478840 PPM1GO15355 546 aaPredicted RBP7.57□□□□□ -1.2
UPF3B-203ENST00000478840 GSTP1P09211 210 aaKnown RBP7.57□□□□□ -1.2
UPF3B-203ENST00000478840 MAP2K3P46734 347 aa7.57□□□□□ -1.2
UPF3B-203ENST00000478840 CASP7P55210 303 aa7.57□□□□□ -1.2
UPF3B-203ENST00000478840 CABP4P57796 275 aa7.57□□□□□ -1.2
UPF3B-203ENST00000478840 CLCQ05315 142 aa7.57□□□□□ -1.2
UPF3B-203ENST00000478840 PTPN11Q06124 597 aaPredicted RBP7.57□□□□□ -1.2
UPF3B-203ENST00000478840 GRIK5Q16478 980 aa7.57□□□□□ -1.2
UPF3B-203ENST00000478840 KANK3Q6NY19 840 aa7.57□□□□□ -1.2
UPF3B-203ENST00000478840 NPAS3Q8IXF0 933 aa7.57□□□□□ -1.2
UPF3B-203ENST00000478840 ANKRD13AQ8IZ07 590 aa7.57□□□□□ -1.2
UPF3B-203ENST00000478840 WNT8BQ93098 351 aa7.57□□□□□ -1.2
UPF3B-203ENST00000478840 CRBNQ96SW2 442 aa7.57□□□□□ -1.2
UPF3B-203ENST00000478840 SH2B1Q9NRF2 756 aaPredicted RBP7.57□□□□□ -1.2
UPF3B-203ENST00000478840 PRR36Q9H6K5 1346 aa7.56□□□□□ -1.2
UPF3B-203ENST00000478840 FAM221BA6H8Z2 402 aa7.56□□□□□ -1.2
UPF3B-203ENST00000478840 CDK11BP21127 795 aaKnown RBP7.56□□□□□ -1.2
UPF3B-203ENST00000478840 PSAPL1Q6NUJ1 521 aa7.56□□□□□ -1.2
UPF3B-203ENST00000478840 C19orf47Q8N9M1 422 aaKnown RBP7.56□□□□□ -1.2
UPF3B-203ENST00000478840 CBX8Q9HC52 389 aa7.56□□□□□ -1.2
UPF3B-203ENST00000478840 ACTR10Q9NZ32 417 aa7.56□□□□□ -1.2
UPF3B-203ENST00000478840 NSFL1CQ9UNZ2 370 aaKnown RBP7.56□□□□□ -1.2
UPF3B-203ENST00000478840 POLR3KQ9Y2Y1 108 aaPredicted RBP7.56□□□□□ -1.2
UPF3B-203ENST00000478840 DDR2Q16832 855 aa7.55□□□□□ -1.2
UPF3B-203ENST00000478840 GK5Q6ZS86 529 aa7.55□□□□□ -1.2
UPF3B-203ENST00000478840 LSRQ86X29 649 aaPredicted RBP7.55□□□□□ -1.2
UPF3B-203ENST00000478840 CELF2-AS1Q8N7Q2 184 aa7.55□□□□□ -1.2
UPF3B-203ENST00000478840 NRSN2Q9GZP1 204 aa7.55□□□□□ -1.2
UPF3B-203ENST00000478840 MBIPQ9NS73 344 aa7.55□□□□□ -1.2
UPF3B-203ENST00000478840 KRT82Q9NSB4 513 aa7.55□□□□□ -1.2
UPF3B-203ENST00000478840 WDR3Q9UNX4 943 aaKnown RBP eCLIP7.55□□□□□ -1.2
UPF3B-203ENST00000478840 MEIS3P2A8K0S8 358 aa7.54□□□□□ -1.2
UPF3B-203ENST00000478840 H3BM21 787 aa7.54□□□□□ -1.2
UPF3B-203ENST00000478840 GFRA2O00451 464 aa7.54□□□□□ -1.2
UPF3B-203ENST00000478840 RGS9O75916 674 aaPredicted RBP7.54□□□□□ -1.2
UPF3B-203ENST00000478840 SELPP16109 830 aa7.54□□□□□ -1.2
UPF3B-203ENST00000478840 BAG6P46379 1132 aa7.54□□□□□ -1.2
UPF3B-203ENST00000478840 PIP4K2BP78356 416 aa7.54□□□□□ -1.2
UPF3B-203ENST00000478840 RASGRF1Q13972 1273 aa7.54□□□□□ -1.2
UPF3B-203ENST00000478840 GDF6Q6KF10 455 aaPredicted RBP7.54□□□□□ -1.2
UPF3B-203ENST00000478840 C20orf204Q6ZNR8 217 aa7.54□□□□□ -1.2
UPF3B-203ENST00000478840 PCDHB14Q9Y5E9 798 aa7.54□□□□□ -1.2
UPF3B-203ENST00000478840 TACC3Q9Y6A5 838 aa7.54□□□□□ -1.2
UPF3B-203ENST00000478840 NEURL1BA8MQ27 555 aa7.53□□□□□ -1.2
UPF3B-203ENST00000478840 CLSTN1O94985 981 aa7.53□□□□□ -1.2
UPF3B-203ENST00000478840 LRRFIP1Q32MZ4 808 aaKnown RBP7.53□□□□□ -1.2
UPF3B-203ENST00000478840 PLEKHG4Q58EX7 1191 aa7.53□□□□□ -1.2
UPF3B-203ENST00000478840 FBXW10Q5XX13 1052 aa7.53□□□□□ -1.2
UPF3B-203ENST00000478840 MAP1SQ66K74 1059 aaPredicted RBP7.53□□□□□ -1.2
UPF3B-203ENST00000478840 MPRIPQ6WCQ1 1025 aa7.53□□□□□ -1.2
UPF3B-203ENST00000478840 SLCO4C1Q6ZQN7 724 aa7.53□□□□□ -1.2
UPF3B-203ENST00000478840 TAB3Q8N5C8 712 aaPredicted RBP7.53□□□□□ -1.2
UPF3B-203ENST00000478840 OSGEPQ9NPF4 335 aa7.53□□□□□ -1.2
UPF3B-203ENST00000478840 GGA1Q9UJY5 639 aa7.53□□□□□ -1.2
UPF3B-203ENST00000478840 STARD13Q9Y3M8 1113 aa7.53□□□□□ -1.2
UPF3B-203ENST00000478840 WIPF1O43516 503 aa7.52□□□□□ -1.21
UPF3B-203ENST00000478840 CYP11A1P05108 521 aa7.52□□□□□ -1.21
UPF3B-203ENST00000478840 ALAS2P22557 587 aa7.52□□□□□ -1.21
UPF3B-203ENST00000478840 GMPRP36959 345 aa7.52□□□□□ -1.21
UPF3B-203ENST00000478840 C19orf57Q0VDD7 668 aa7.52□□□□□ -1.21
UPF3B-203ENST00000478840 FXNQ16595 210 aa7.52□□□□□ -1.21
UPF3B-203ENST00000478840 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.52□□□□□ -1.21
UPF3B-203ENST00000478840 GOLGA6L1Q8N7Z2 621 aa7.52□□□□□ -1.21
UPF3B-203ENST00000478840 TM9SF2Q99805 663 aa7.52□□□□□ -1.21
UPF3B-203ENST00000478840 TNKS2Q9H2K2 1166 aa7.52□□□□□ -1.21
UPF3B-203ENST00000478840 GDF2Q9UK05 429 aaPredicted RBP7.52□□□□□ -1.21
UPF3B-203ENST00000478840 PPME1Q9Y570 386 aa7.52□□□□□ -1.21
UPF3B-203ENST00000478840 SNCAIPQ9Y6H5 919 aa7.52□□□□□ -1.21
UPF3B-203ENST00000478840 PDPK1O15530 556 aa7.51□□□□□ -1.21
UPF3B-203ENST00000478840 ARL4DP49703 201 aa7.51□□□□□ -1.21
UPF3B-203ENST00000478840 HGSNATQ68CP4 663 aa7.51□□□□□ -1.21
UPF3B-203ENST00000478840 IL22RA1Q8N6P7 574 aa7.51□□□□□ -1.21
UPF3B-203ENST00000478840 JMYQ8N9B5 988 aa7.51□□□□□ -1.21
UPF3B-203ENST00000478840 GPBAR1Q8TDU6 330 aa7.51□□□□□ -1.21
UPF3B-203ENST00000478840 SLC16A10Q8TF71 515 aa7.51□□□□□ -1.21
UPF3B-203ENST00000478840 BRINP2Q9C0B6 783 aa7.51□□□□□ -1.21
UPF3B-203ENST00000478840 MAPK8IP1Q9UQF2 711 aa7.51□□□□□ -1.21
UPF3B-203ENST00000478840 TM4SF5O14894 197 aa7.5□□□□□ -1.21
UPF3B-203ENST00000478840 VSIG8P0DPA2 414 aa7.5□□□□□ -1.21
UPF3B-203ENST00000478840 AFF1P51825 1210 aaKnown RBP7.5□□□□□ -1.21
UPF3B-203ENST00000478840 GSTM4Q03013 218 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms