RNA–Protein interactions for RNA: ENST00000477836.1

SMARCB1-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 2

Gene SMARCB1, Length 660 nt, Biotype processed transcript, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-206ENST00000477836 MAFAQ8NHW3 353 aaPredicted RBP12.45□□□□□ -0.42
SMARCB1-206ENST00000477836 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.45□□□□□ -0.42
SMARCB1-206ENST00000477836 C11orf49Q9H6J7 331 aa12.45□□□□□ -0.42
SMARCB1-206ENST00000477836 MAP3K2Q9Y2U5 619 aa12.45□□□□□ -0.42
SMARCB1-206ENST00000477836 PLA2G5P39877 138 aa12.44□□□□□ -0.42
SMARCB1-206ENST00000477836 MDM2Q00987 491 aaPredicted RBP12.44□□□□□ -0.42
SMARCB1-206ENST00000477836 IRF5Q13568 498 aa12.44□□□□□ -0.42
SMARCB1-206ENST00000477836 MOGSQ13724 837 aa12.44□□□□□ -0.42
SMARCB1-206ENST00000477836 MFSD14BQ5SR56 506 aa12.44□□□□□ -0.42
SMARCB1-206ENST00000477836 ZNF697Q5TEC3 545 aa12.44□□□□□ -0.42
SMARCB1-206ENST00000477836 CDX2Q99626 313 aaPredicted RBP12.44□□□□□ -0.42
SMARCB1-206ENST00000477836 DDX60LQ5H9U9 1706 aaKnown RBP12.43□□□□□ -0.42
SMARCB1-206ENST00000477836 INPP5BP32019 993 aa12.43□□□□□ -0.42
SMARCB1-206ENST00000477836 DCAF15Q66K64 600 aa12.43□□□□□ -0.42
SMARCB1-206ENST00000477836 MIGA2Q7L4E1 593 aa12.43□□□□□ -0.42
SMARCB1-206ENST00000477836 UBE3BQ7Z3V4 1068 aa12.43□□□□□ -0.42
SMARCB1-206ENST00000477836 MIER1Q8N108 512 aa12.43□□□□□ -0.42
SMARCB1-206ENST00000477836 FAM122AQ96E09 287 aa12.43□□□□□ -0.42
SMARCB1-206ENST00000477836 HOOK2Q96ED9 719 aa12.43□□□□□ -0.42
SMARCB1-206ENST00000477836 KCNH4Q9UQ05 1017 aa12.43□□□□□ -0.42
SMARCB1-206ENST00000477836 ELL2O00472 640 aaPredicted RBP12.42□□□□□ -0.42
SMARCB1-206ENST00000477836 CWF19L2Q2TBE0 894 aaKnown RBP12.42□□□□□ -0.42
SMARCB1-206ENST00000477836 GPAT2Q6NUI2 795 aa12.42□□□□□ -0.42
SMARCB1-206ENST00000477836 ZNF341Q9BYN7 854 aa12.42□□□□□ -0.42
SMARCB1-206ENST00000477836 A0A1B0GUL6 1792 aa12.41□□□□□ -0.42
SMARCB1-206ENST00000477836 TNFRSF10AO00220 468 aa12.41□□□□□ -0.42
SMARCB1-206ENST00000477836 NEXNQ0ZGT2 675 aa12.41□□□□□ -0.42
SMARCB1-206ENST00000477836 TRIM35Q9UPQ4 493 aa12.41□□□□□ -0.42
SMARCB1-206ENST00000477836 TTC28Q96AY4 2481 aa12.4□□□□□ -0.42
SMARCB1-206ENST00000477836 COL2A1P02458 1487 aaPredicted RBP12.4□□□□□ -0.42
SMARCB1-206ENST00000477836 ANKRD18BA2A2Z9 1011 aa12.4□□□□□ -0.42
SMARCB1-206ENST00000477836 PI4KAP2A4QPH2 592 aa12.4□□□□□ -0.42
SMARCB1-206ENST00000477836 NEURL1BA8MQ27 555 aa12.4□□□□□ -0.42
SMARCB1-206ENST00000477836 H7C1W4 665 aa12.4□□□□□ -0.42
SMARCB1-206ENST00000477836 PLIN1O60240 522 aa12.4□□□□□ -0.42
SMARCB1-206ENST00000477836 KSR2Q6VAB6 950 aa12.4□□□□□ -0.42
SMARCB1-206ENST00000477836 FAM83AQ86UY5 434 aa12.4□□□□□ -0.42
SMARCB1-206ENST00000477836 CCDC146Q8IYE0 955 aa12.4□□□□□ -0.42
SMARCB1-206ENST00000477836 PI4KAP1Q8N8J0 262 aa12.4□□□□□ -0.42
SMARCB1-206ENST00000477836 MYLIPQ8WY64 445 aa12.4□□□□□ -0.42
SMARCB1-206ENST00000477836 COA7Q96BR5 231 aa12.4□□□□□ -0.42
SMARCB1-206ENST00000477836 HMX1Q9NP08 348 aaPredicted RBP12.4□□□□□ -0.42
SMARCB1-206ENST00000477836 MBIPQ9NS73 344 aa12.4□□□□□ -0.42
SMARCB1-206ENST00000477836 TMOD2Q9NZR1 351 aa12.4□□□□□ -0.42
SMARCB1-206ENST00000477836 PFASO15067 1338 aa12.39□□□□□ -0.43
SMARCB1-206ENST00000477836 TMEM265A0A087WTH1 108 aa12.39□□□□□ -0.43
SMARCB1-206ENST00000477836 CSF1RP07333 972 aa12.39□□□□□ -0.43
SMARCB1-206ENST00000477836 PLA2G12BQ9BX93 195 aa12.39□□□□□ -0.43
SMARCB1-206ENST00000477836 SEMA6BQ9H3T3 888 aa12.39□□□□□ -0.43
SMARCB1-206ENST00000477836 HMGCRP04035 888 aa12.38□□□□□ -0.43
SMARCB1-206ENST00000477836 TRIM32Q13049 653 aa12.38□□□□□ -0.43
SMARCB1-206ENST00000477836 GRIK5Q16478 980 aa12.38□□□□□ -0.43
SMARCB1-206ENST00000477836 TJAP1Q5JTD0 557 aa12.38□□□□□ -0.43
SMARCB1-206ENST00000477836 TDRD7Q8NHU6 1098 aaKnown RBP12.38□□□□□ -0.43
SMARCB1-206ENST00000477836 SMCR8Q8TEV9 937 aaPredicted RBP12.38□□□□□ -0.43
SMARCB1-206ENST00000477836 PRKRIP1Q9H875 184 aaPredicted RBP12.38□□□□□ -0.43
SMARCB1-206ENST00000477836 OGDHLQ9ULD0 1010 aa12.38□□□□□ -0.43
SMARCB1-206ENST00000477836 CXCL11O14625 94 aa12.37□□□□□ -0.43
SMARCB1-206ENST00000477836 FOSL2P15408 326 aa12.37□□□□□ -0.43
SMARCB1-206ENST00000477836 HIBADHP31937 336 aaKnown RBP12.37□□□□□ -0.43
SMARCB1-206ENST00000477836 GYG1P46976 350 aa12.37□□□□□ -0.43
SMARCB1-206ENST00000477836 GADL1Q6ZQY3 521 aa12.37□□□□□ -0.43
SMARCB1-206ENST00000477836 TEKT1Q969V4 418 aa12.37□□□□□ -0.43
SMARCB1-206ENST00000477836 LBHD1Q9BQE6 289 aaPredicted RBP12.37□□□□□ -0.43
SMARCB1-206ENST00000477836 DOCK3Q8IZD9 2030 aa12.37□□□□□ -0.43
SMARCB1-206ENST00000477836 HOXD11P31277 338 aaPredicted RBP12.36□□□□□ -0.43
SMARCB1-206ENST00000477836 HDLBPQ00341 1268 aaKnown RBP12.36□□□□□ -0.43
SMARCB1-206ENST00000477836 IFIT5Q13325 482 aaKnown RBP12.36□□□□□ -0.43
SMARCB1-206ENST00000477836 GCKRQ14397 625 aa12.36□□□□□ -0.43
SMARCB1-206ENST00000477836 LRRC26Q2I0M4 334 aa12.36□□□□□ -0.43
SMARCB1-206ENST00000477836 CCDC30Q5VVM6 783 aa12.36□□□□□ -0.43
SMARCB1-206ENST00000477836 FASTKD5Q7L8L6 764 aaKnown RBP12.36□□□□□ -0.43
SMARCB1-206ENST00000477836 ANKRD13CQ8N6S4 541 aa12.36□□□□□ -0.43
SMARCB1-206ENST00000477836 ZNF112Q9UJU3 913 aa12.36□□□□□ -0.43
SMARCB1-206ENST00000477836 CHMP3Q9Y3E7 222 aa12.36□□□□□ -0.43
SMARCB1-206ENST00000477836 RPAP1Q9BWH6 1393 aaPredicted RBP12.35□□□□□ -0.43
SMARCB1-206ENST00000477836 A0A0G2JLL6 359 aaPredicted RBP12.35□□□□□ -0.43
SMARCB1-206ENST00000477836 CCER2I3L3R5 266 aa12.35□□□□□ -0.43
SMARCB1-206ENST00000477836 CASP7P55210 303 aa12.35□□□□□ -0.43
SMARCB1-206ENST00000477836 CHAF1AQ13111 956 aaPredicted RBP12.35□□□□□ -0.43
SMARCB1-206ENST00000477836 RALBP1Q15311 655 aa12.35□□□□□ -0.43
SMARCB1-206ENST00000477836 NOL9Q5SY16 702 aaKnown RBP12.35□□□□□ -0.43
SMARCB1-206ENST00000477836 FKBP1CQ5VVH2 108 aa12.35□□□□□ -0.43
SMARCB1-206ENST00000477836 PRRT2Q7Z6L0 340 aaPredicted RBP12.35□□□□□ -0.43
SMARCB1-206ENST00000477836 IQSEC3Q9UPP2 1182 aaPredicted RBP12.35□□□□□ -0.43
SMARCB1-206ENST00000477836 MYBBP1AQ9BQG0 1328 aaKnown RBP12.35□□□□□ -0.43
SMARCB1-206ENST00000477836 COL6A1P12109 1028 aa12.34□□□□□ -0.43
SMARCB1-206ENST00000477836 MAP3K12Q12852 859 aa12.34□□□□□ -0.43
SMARCB1-206ENST00000477836 APOBEC3HQ6NTF7 200 aaKnown RBP12.34□□□□□ -0.43
SMARCB1-206ENST00000477836 LDHAL6AQ6ZMR3 332 aa12.34□□□□□ -0.43
SMARCB1-206ENST00000477836 C8orf58Q8NAV2 365 aa12.34□□□□□ -0.43
SMARCB1-206ENST00000477836 ZNF594Q96JF6 807 aaPredicted RBP12.34□□□□□ -0.43
SMARCB1-206ENST00000477836 FAM84BQ96KN1 310 aaPredicted RBP12.34□□□□□ -0.43
SMARCB1-206ENST00000477836 ZDHHC15Q96MV8 337 aa12.34□□□□□ -0.43
SMARCB1-206ENST00000477836 TTYH1Q9H313 450 aaPredicted RBP12.34□□□□□ -0.43
SMARCB1-206ENST00000477836 CNNM1Q9NRU3 951 aa12.34□□□□□ -0.43
SMARCB1-206ENST00000477836 SLC45A1Q9Y2W3 748 aa12.34□□□□□ -0.43
SMARCB1-206ENST00000477836 ZHX2Q9Y6X8 837 aa12.34□□□□□ -0.43
SMARCB1-206ENST00000477836 AK9Q5TCS8 1911 aa12.34□□□□□ -0.43
SMARCB1-206ENST00000477836 TCP10Q12799 353 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms