RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 PDIA3P30101 505 aaKnown RBP16.72■□□□□ 0.27
HDAC6-220ENST00000477528 ADORA1P30542 326 aa16.72■□□□□ 0.27
HDAC6-220ENST00000477528 TICAM2Q86XR7 235 aa16.72■□□□□ 0.27
HDAC6-220ENST00000477528 TSG101Q99816 390 aa16.72■□□□□ 0.27
HDAC6-220ENST00000477528 GREM2Q9H772 168 aa16.72■□□□□ 0.27
HDAC6-220ENST00000477528 TMOD2Q9NZR1 351 aa16.72■□□□□ 0.27
HDAC6-220ENST00000477528 MAST3O60307 1309 aa16.72■□□□□ 0.27
HDAC6-220ENST00000477528 CUTAO60888 179 aa16.71■□□□□ 0.27
HDAC6-220ENST00000477528 ZNF76P36508 570 aa16.71■□□□□ 0.27
HDAC6-220ENST00000477528 CTDSPL2Q05D32 466 aa16.71■□□□□ 0.27
HDAC6-220ENST00000477528 PPP2R5BQ15173 497 aa16.71■□□□□ 0.27
HDAC6-220ENST00000477528 MYSM1Q5VVJ2 828 aa16.71■□□□□ 0.27
HDAC6-220ENST00000477528 RRAGBQ5VZM2 374 aa16.71■□□□□ 0.27
HDAC6-220ENST00000477528 USP28Q96RU2 1077 aa16.71■□□□□ 0.27
HDAC6-220ENST00000477528 N4BP3O15049 544 aa16.71■□□□□ 0.27
HDAC6-220ENST00000477528 ADALQ6DHV7 355 aa16.71■□□□□ 0.27
HDAC6-220ENST00000477528 IQCEQ6IPM2 695 aa16.71■□□□□ 0.27
HDAC6-220ENST00000477528 DIS3L2Q8IYB7 885 aaKnown RBP16.71■□□□□ 0.27
HDAC6-220ENST00000477528 ZNF202O95125 648 aa16.71■□□□□ 0.27
HDAC6-220ENST00000477528 PDE8BO95263 885 aa16.71■□□□□ 0.27
HDAC6-220ENST00000477528 TERF1P54274 439 aa16.71■□□□□ 0.27
HDAC6-220ENST00000477528 UBE3CQ15386 1083 aa16.71■□□□□ 0.27
HDAC6-220ENST00000477528 AKNAD1Q5T1N1 836 aa16.71■□□□□ 0.27
HDAC6-220ENST00000477528 PHKBQ93100 1093 aa16.71■□□□□ 0.27
HDAC6-220ENST00000477528 CABP5Q9NP86 173 aa16.71■□□□□ 0.27
HDAC6-220ENST00000477528 NR1I2O75469 434 aa16.71■□□□□ 0.26
HDAC6-220ENST00000477528 EIF3JO75822 258 aaKnown RBP16.71■□□□□ 0.26
HDAC6-220ENST00000477528 STAT6P42226 847 aa16.71■□□□□ 0.26
HDAC6-220ENST00000477528 HSP90AA4PQ58FG1 418 aa16.71■□□□□ 0.26
HDAC6-220ENST00000477528 CCDC181Q5TID7 509 aa16.71■□□□□ 0.26
HDAC6-220ENST00000477528 KCNH3Q9ULD8 1083 aa16.71■□□□□ 0.26
HDAC6-220ENST00000477528 SETD1BQ9UPS6 1966 aaKnown RBP16.7■□□□□ 0.26
HDAC6-220ENST00000477528 ZNF500O60304 480 aaPredicted RBP16.7■□□□□ 0.26
HDAC6-220ENST00000477528 LDHBP07195 334 aaKnown RBP16.7■□□□□ 0.26
HDAC6-220ENST00000477528 HIBADHP31937 336 aaKnown RBP16.7■□□□□ 0.26
HDAC6-220ENST00000477528 PDE4CQ08493 712 aa16.7■□□□□ 0.26
HDAC6-220ENST00000477528 HEATR3Q7Z4Q2 680 aa16.7■□□□□ 0.26
HDAC6-220ENST00000477528 KLHL34Q8N239 644 aa16.7■□□□□ 0.26
HDAC6-220ENST00000477528 CCDC66A2RUB6 948 aa16.7■□□□□ 0.26
HDAC6-220ENST00000477528 SPA17Q15506 151 aa16.7■□□□□ 0.26
HDAC6-220ENST00000477528 TMEM87AQ8NBN3 555 aa16.7■□□□□ 0.26
HDAC6-220ENST00000477528 MYL10Q9BUA6 226 aa16.7■□□□□ 0.26
HDAC6-220ENST00000477528 FAM114A1Q8IWE2 563 aa16.69■□□□□ 0.26
HDAC6-220ENST00000477528 TTC14Q96N46 770 aa16.69■□□□□ 0.26
HDAC6-220ENST00000477528 USP42Q9H9J4 1324 aaKnown RBP16.69■□□□□ 0.26
HDAC6-220ENST00000477528 GNPATO15228 680 aa16.69■□□□□ 0.26
HDAC6-220ENST00000477528 HLA-DOAP06340 250 aa16.69■□□□□ 0.26
HDAC6-220ENST00000477528 IL6STP40189 918 aaPredicted RBP16.69■□□□□ 0.26
HDAC6-220ENST00000477528 GNG11P61952 73 aa16.69■□□□□ 0.26
HDAC6-220ENST00000477528 PRKCSHP14314 528 aaPredicted RBP16.69■□□□□ 0.26
HDAC6-220ENST00000477528 PLCG2P16885 1265 aa16.69■□□□□ 0.26
HDAC6-220ENST00000477528 MTIF2P46199 727 aaKnown RBP16.69■□□□□ 0.26
HDAC6-220ENST00000477528 CBX1P83916 185 aa16.69■□□□□ 0.26
HDAC6-220ENST00000477528 PPP4R3BQ5MIZ7 849 aa16.69■□□□□ 0.26
HDAC6-220ENST00000477528 CEMIPQ8WUJ3 1361 aa16.69■□□□□ 0.26
HDAC6-220ENST00000477528 NSUN7Q8NE18 718 aaKnown RBP16.68■□□□□ 0.26
HDAC6-220ENST00000477528 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.68■□□□□ 0.261e-6■■■□□ 16.9
HDAC6-220ENST00000477528 RICTORQ6R327 1708 aa16.68■□□□□ 0.26
HDAC6-220ENST00000477528 IFNL3Q8IZI9 196 aa16.68■□□□□ 0.26
HDAC6-220ENST00000477528 KIF20AO95235 890 aa16.68■□□□□ 0.26
HDAC6-220ENST00000477528 NLRP12P59046 1061 aa16.68■□□□□ 0.26
HDAC6-220ENST00000477528 GBP3Q9H0R5 595 aa16.68■□□□□ 0.26
HDAC6-220ENST00000477528 ZDHHC9Q9Y397 364 aa16.68■□□□□ 0.26
HDAC6-220ENST00000477528 ZMYM6O95789 1325 aa16.68■□□□□ 0.26
HDAC6-220ENST00000477528 AEBP2Q6ZN18 517 aaPredicted RBP16.67■□□□□ 0.26
HDAC6-220ENST00000477528 BRINP3Q76B58 766 aa16.67■□□□□ 0.26
HDAC6-220ENST00000477528 IQUBQ8NA54 791 aa16.67■□□□□ 0.26
HDAC6-220ENST00000477528 TRIM47Q96LD4 638 aa16.67■□□□□ 0.26
HDAC6-220ENST00000477528 NSFL1CQ9UNZ2 370 aaKnown RBP16.67■□□□□ 0.26
HDAC6-220ENST00000477528 M0R2C6 588 aa16.67■□□□□ 0.26
HDAC6-220ENST00000477528 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.67■□□□□ 0.26
HDAC6-220ENST00000477528 ZBTB1Q9Y2K1 713 aa16.67■□□□□ 0.26
HDAC6-220ENST00000477528 UBAP1LF5GYI3 381 aa16.67■□□□□ 0.26
HDAC6-220ENST00000477528 NAPAP54920 295 aa16.67■□□□□ 0.26
HDAC6-220ENST00000477528 LRRC27Q9C0I9 530 aa16.67■□□□□ 0.26
HDAC6-220ENST00000477528 CYP2E1P05181 493 aaPredicted RBP16.67■□□□□ 0.26
HDAC6-220ENST00000477528 TNS3Q68CZ2 1445 aa16.67■□□□□ 0.26
HDAC6-220ENST00000477528 PHKA1P46020 1223 aa16.66■□□□□ 0.26
HDAC6-220ENST00000477528 EXOC1Q9NV70 894 aa16.66■□□□□ 0.26
HDAC6-220ENST00000477528 DNAI1Q9UI46 699 aa16.66■□□□□ 0.26
HDAC6-220ENST00000477528 RFX7Q2KHR2 1363 aa16.66■□□□□ 0.26
HDAC6-220ENST00000477528 CEP170BQ9Y4F5 1589 aaPredicted RBP16.66■□□□□ 0.26
HDAC6-220ENST00000477528 IDEP14735 1019 aa16.66■□□□□ 0.26
HDAC6-220ENST00000477528 NLRP10Q86W26 655 aa16.66■□□□□ 0.26
HDAC6-220ENST00000477528 C6orf50Q9HD87 102 aa16.66■□□□□ 0.26
HDAC6-220ENST00000477528 V9GY48 417 aaPredicted RBP16.66■□□□□ 0.26
HDAC6-220ENST00000477528 SHPRHQ149N8 1683 aa16.66■□□□□ 0.26
HDAC6-220ENST00000477528 CT47A1Q5JQC4 288 aaPredicted RBP16.66■□□□□ 0.26
HDAC6-220ENST00000477528 CACNA2D4Q7Z3S7 1137 aa16.66■□□□□ 0.26
HDAC6-220ENST00000477528 FBXO18Q8NFZ0 1043 aa16.66■□□□□ 0.26
HDAC6-220ENST00000477528 CWC15Q9P013 229 aaKnown RBP16.66■□□□□ 0.26
HDAC6-220ENST00000477528 C1orf167Q5SNV9 1468 aa16.65■□□□□ 0.26
HDAC6-220ENST00000477528 PRDM1O75626 825 aa16.65■□□□□ 0.26
HDAC6-220ENST00000477528 MCM7P33993 719 aa16.65■□□□□ 0.26
HDAC6-220ENST00000477528 ADD1P35611 737 aaKnown RBP16.65■□□□□ 0.26
HDAC6-220ENST00000477528 OSBP2Q969R2 916 aa16.65■□□□□ 0.26
HDAC6-220ENST00000477528 PSMA7O14818 248 aa16.65■□□□□ 0.26
HDAC6-220ENST00000477528 PPARAQ07869 468 aa16.65■□□□□ 0.26
HDAC6-220ENST00000477528 JAG2Q9Y219 1238 aa16.65■□□□□ 0.26
HDAC6-220ENST00000477528 MED23Q9ULK4 1368 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms