RNA–Protein interactions for RNA: ENST00000474215.5

CKS1B-206, Transcript of CDC28 protein kinase regulatory subunit 1B, human

TSL 3

Gene CKS1B, Length 739 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CKS1B-206	ENST00000474215	DDX19B	Q9UMR2	479 aa		13.77	□□□□□ -0.21
CKS1B-206	ENST00000474215	COG6	Q9Y2V7	657 aa		13.77	□□□□□ -0.21
CKS1B-206	ENST00000474215	FPGT-TNNI3K	V9GXZ4	949 aa		13.77	□□□□□ -0.21
CKS1B-206	ENST00000474215	CCDC158	Q5M9N0	1113 aa		13.76	□□□□□ -0.21
CKS1B-206	ENST00000474215	DZIP1	Q86YF9	867 aa	Known RBP	13.76	□□□□□ -0.21
CKS1B-206	ENST00000474215	SLF2	Q8IX21	1173 aa		13.76	□□□□□ -0.21
CKS1B-206	ENST00000474215	HOOK2	Q96ED9	719 aa		13.76	□□□□□ -0.21
CKS1B-206	ENST00000474215	FAM163A	Q96GL9	167 aa	Predicted RBP	13.76	□□□□□ -0.21
CKS1B-206	ENST00000474215	CHMP4B	Q9H444	224 aa	Known RBP	13.76	□□□□□ -0.21
CKS1B-206	ENST00000474215	ZBTB40	Q9NUA8	1239 aa		13.76	□□□□□ -0.21
CKS1B-206	ENST00000474215	ZBTB48	P10074	688 aa	Predicted RBP	13.75	□□□□□ -0.21
CKS1B-206	ENST00000474215	INHBE	P58166	350 aa		13.75	□□□□□ -0.21
CKS1B-206	ENST00000474215	SREBF2	Q12772	1141 aa		13.75	□□□□□ -0.21
CKS1B-206	ENST00000474215	PDE3A	Q14432	1141 aa		13.75	□□□□□ -0.21
CKS1B-206	ENST00000474215	PI16	Q6UXB8	463 aa		13.75	□□□□□ -0.21
CKS1B-206	ENST00000474215	TBC1D9	Q6ZT07	1266 aa		13.75	□□□□□ -0.21
CKS1B-206	ENST00000474215	ERICH6	Q7L0X2	663 aa		13.75	□□□□□ -0.21
CKS1B-206	ENST00000474215	RPAP2	Q8IXW5	612 aa	Predicted RBP	13.75	□□□□□ -0.21
CKS1B-206	ENST00000474215	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	13.75	□□□□□ -0.21
CKS1B-206	ENST00000474215	FAM151A	Q8WW52	585 aa		13.75	□□□□□ -0.21
CKS1B-206	ENST00000474215	DBNDD2	Q9BQY9	259 aa		13.75	□□□□□ -0.21
CKS1B-206	ENST00000474215	GAK	O14976	1311 aa		13.74	□□□□□ -0.21
CKS1B-206	ENST00000474215	MCAM	P43121	646 aa		13.74	□□□□□ -0.21
CKS1B-206	ENST00000474215	MAP3K9	P80192	1104 aa		13.74	□□□□□ -0.21
CKS1B-206	ENST00000474215	MECOM	Q03112	1051 aa		13.74	□□□□□ -0.21
CKS1B-206	ENST00000474215	HSP90AB4P	Q58FF6	505 aa		13.74	□□□□□ -0.21
CKS1B-206	ENST00000474215	TTC39A	Q5SRH9	613 aa		13.74	□□□□□ -0.21
CKS1B-206	ENST00000474215	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	13.74	□□□□□ -0.21
CKS1B-206	ENST00000474215	ERC1	Q8IUD2	1116 aa		13.74	□□□□□ -0.21
CKS1B-206	ENST00000474215	WNK4	Q96J92	1243 aa		13.74	□□□□□ -0.21
CKS1B-206	ENST00000474215	EXOC6B	Q9Y2D4	811 aa		13.74	□□□□□ -0.21
CKS1B-206	ENST00000474215	MYH13	Q9UKX3	1938 aa		13.74	□□□□□ -0.21
CKS1B-206	ENST00000474215	MANSC4	A6NHS7	340 aa	Predicted RBP	13.73	□□□□□ -0.21
CKS1B-206	ENST00000474215	LDHC	P07864	332 aa		13.73	□□□□□ -0.21
CKS1B-206	ENST00000474215	GSTO1	P78417	241 aa		13.73	□□□□□ -0.21
CKS1B-206	ENST00000474215	TCP10	Q12799	353 aa		13.73	□□□□□ -0.21
CKS1B-206	ENST00000474215	NFIA	Q12857	509 aa		13.73	□□□□□ -0.21
CKS1B-206	ENST00000474215	C20orf194	Q5TEA3	1177 aa		13.73	□□□□□ -0.21
CKS1B-206	ENST00000474215	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	13.73	□□□□□ -0.21	4e-8	■■■■□ 19.8
CKS1B-206	ENST00000474215	EAF2	Q96CJ1	260 aa	Predicted RBP	13.73	□□□□□ -0.21
CKS1B-206	ENST00000474215	ZNF512B	Q96KM6	892 aa	Predicted RBP	13.73	□□□□□ -0.21
CKS1B-206	ENST00000474215	ELP3	Q9H9T3	547 aa		13.73	□□□□□ -0.21
CKS1B-206	ENST00000474215	RAI14	Q9P0K7	980 aa		13.73	□□□□□ -0.21
CKS1B-206	ENST00000474215	FAM198A	Q9UFP1	575 aa		13.73	□□□□□ -0.21
CKS1B-206	ENST00000474215	GPR75-ASB3	A0A0A6YYF3	556 aa		13.72	□□□□□ -0.21
CKS1B-206	ENST00000474215	HMMR	O75330	724 aa		13.72	□□□□□ -0.21
CKS1B-206	ENST00000474215	VGLL4	Q14135	290 aa		13.72	□□□□□ -0.21
CKS1B-206	ENST00000474215	DCAF15	Q66K64	600 aa		13.72	□□□□□ -0.21
CKS1B-206	ENST00000474215	SIRT2	Q8IXJ6	389 aa		13.72	□□□□□ -0.21
CKS1B-206	ENST00000474215	ZNF384	Q8TF68	577 aa		13.72	□□□□□ -0.21
CKS1B-206	ENST00000474215	NSUN4	Q96CB9	384 aa	Known RBP	13.72	□□□□□ -0.21
CKS1B-206	ENST00000474215	IDI2	Q9BXS1	227 aa		13.72	□□□□□ -0.21
CKS1B-206	ENST00000474215	CCDC8	Q9H0W5	538 aa	Predicted RBP	13.72	□□□□□ -0.21
CKS1B-206	ENST00000474215	SNRK	Q9NRH2	765 aa		13.72	□□□□□ -0.21
CKS1B-206	ENST00000474215	LRP2BP	Q9P2M1	347 aa		13.72	□□□□□ -0.21
CKS1B-206	ENST00000474215	DBNL	Q9UJU6	430 aa	Known RBP	13.72	□□□□□ -0.21
CKS1B-206	ENST00000474215	CSAD	Q9Y600	493 aa		13.72	□□□□□ -0.21
CKS1B-206	ENST00000474215	RPAP1	Q9BWH6	1393 aa	Predicted RBP	13.71	□□□□□ -0.21
CKS1B-206	ENST00000474215	MROH7-TTC4	A0A0A0MT08	1334 aa		13.71	□□□□□ -0.21
CKS1B-206	ENST00000474215	ENTPD3	O75355	529 aa		13.71	□□□□□ -0.21
CKS1B-206	ENST00000474215	CAPN15	O75808	1086 aa		13.71	□□□□□ -0.21
CKS1B-206	ENST00000474215	TBC1D8	O95759	1140 aa		13.71	□□□□□ -0.21
CKS1B-206	ENST00000474215	ALDH1A1	P00352	501 aa		13.71	□□□□□ -0.21
CKS1B-206	ENST00000474215	GJA5	P36382	358 aa		13.71	□□□□□ -0.21
CKS1B-206	ENST00000474215	BTD	P43251	543 aa		13.71	□□□□□ -0.21
CKS1B-206	ENST00000474215	RGS3	P49796	1198 aa		13.71	□□□□□ -0.21
CKS1B-206	ENST00000474215	MIGA2	Q7L4E1	593 aa		13.71	□□□□□ -0.21
CKS1B-206	ENST00000474215	IFNL1	Q8IU54	200 aa		13.71	□□□□□ -0.21
CKS1B-206	ENST00000474215	ZFPM1	Q8IX07	1006 aa		13.71	□□□□□ -0.21
CKS1B-206	ENST00000474215	OPTN	Q96CV9	577 aa		13.71	□□□□□ -0.21
CKS1B-206	ENST00000474215	TLR7	Q9NYK1	1049 aa	Known RBP	13.71	□□□□□ -0.21
CKS1B-206	ENST00000474215	MAP4K4	O95819	1239 aa	Predicted RBP	13.7	□□□□□ -0.22
CKS1B-206	ENST00000474215	MAPK8IP2	Q13387	824 aa	Predicted RBP	13.7	□□□□□ -0.22
CKS1B-206	ENST00000474215	AACS	Q86V21	672 aa		13.7	□□□□□ -0.22
CKS1B-206	ENST00000474215	RHPN1	Q8TCX5	695 aa		13.7	□□□□□ -0.22
CKS1B-206	ENST00000474215	ZKSCAN4	Q969J2	545 aa	Predicted RBP	13.7	□□□□□ -0.22
CKS1B-206	ENST00000474215	WRNIP1	Q96S55	665 aa		13.7	□□□□□ -0.22
CKS1B-206	ENST00000474215	ZNF341	Q9BYN7	854 aa		13.7	□□□□□ -0.22
CKS1B-206	ENST00000474215	TESPA1	A2RU30	521 aa	Predicted RBP	13.69	□□□□□ -0.22
CKS1B-206	ENST00000474215	IGSF3	O75054	1194 aa		13.69	□□□□□ -0.22
CKS1B-206	ENST00000474215	WDHD1	O75717	1129 aa	Predicted RBP	13.69	□□□□□ -0.22
CKS1B-206	ENST00000474215	CYP2E1	P05181	493 aa	Predicted RBP	13.69	□□□□□ -0.22
CKS1B-206	ENST00000474215	ZAP70	P43403	619 aa		13.69	□□□□□ -0.22
CKS1B-206	ENST00000474215	RHBDL3	P58872	404 aa		13.69	□□□□□ -0.22
CKS1B-206	ENST00000474215	OTUD7B	Q6GQQ9	843 aa		13.69	□□□□□ -0.22
CKS1B-206	ENST00000474215	CNKSR2	Q8WXI2	1034 aa		13.69	□□□□□ -0.22
CKS1B-206	ENST00000474215	MS4A4A	Q96JQ5	239 aa		13.69	□□□□□ -0.22
CKS1B-206	ENST00000474215	CFHR5	Q9BXR6	569 aa		13.69	□□□□□ -0.22
CKS1B-206	ENST00000474215	IL1RAPL2	Q9NP60	686 aa		13.69	□□□□□ -0.22
CKS1B-206	ENST00000474215	ZNF112	Q9UJU3	913 aa		13.69	□□□□□ -0.22
CKS1B-206	ENST00000474215	SNCAIP	Q9Y6H5	919 aa		13.69	□□□□□ -0.22
CKS1B-206	ENST00000474215	AKAP11	Q9UKA4	1901 aa		13.68	□□□□□ -0.22
CKS1B-206	ENST00000474215	SPDYE5	A6NIY4	337 aa		13.68	□□□□□ -0.22
CKS1B-206	ENST00000474215	APBB1	O00213	710 aa		13.68	□□□□□ -0.22
CKS1B-206	ENST00000474215	IGF2BP3	O00425	579 aa	Known RBP eCLIP	13.68	□□□□□ -0.22
CKS1B-206	ENST00000474215	RAB11FIP3	O75154	756 aa		13.68	□□□□□ -0.22
CKS1B-206	ENST00000474215	NPM3	O75607	178 aa	Known RBP	13.68	□□□□□ -0.22
CKS1B-206	ENST00000474215	DGKZ	Q13574	1117 aa		13.68	□□□□□ -0.22
CKS1B-206	ENST00000474215	NOM1	Q5C9Z4	860 aa	Known RBP	13.68	□□□□□ -0.22
CKS1B-206	ENST00000474215	NAA16	Q6N069	864 aa	Predicted RBP	13.68	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms