RNA–Protein interactions for RNA: ENST00000473602.1

SHROOM3-204, Transcript of shroom family member 3, humanhuman

TSL 3

Gene SHROOM3, Length 789 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-204ENST00000473602 ATP8B2P98198 1209 aa16.02■□□□□ 0.16
SHROOM3-204ENST00000473602 HDLBPQ00341 1268 aaKnown RBP16.02■□□□□ 0.16
SHROOM3-204ENST00000473602 CHAF1AQ13111 956 aaPredicted RBP16.02■□□□□ 0.16
SHROOM3-204ENST00000473602 POLA2Q14181 598 aa16.02■□□□□ 0.16
SHROOM3-204ENST00000473602 WDR66Q8TBY9 1149 aa16.02■□□□□ 0.16
SHROOM3-204ENST00000473602 PANK1Q8TE04 598 aa16.02■□□□□ 0.16
SHROOM3-204ENST00000473602 OPTNQ96CV9 577 aa16.02■□□□□ 0.16
SHROOM3-204ENST00000473602 TMEM106CQ9BVX2 250 aa16.02■□□□□ 0.16
SHROOM3-204ENST00000473602 G3BP1Q13283 466 aaKnown RBP eCLIP16.01■□□□□ 0.15
SHROOM3-204ENST00000473602 ZNF333Q96JL9 665 aa16.01■□□□□ 0.15
SHROOM3-204ENST00000473602 MS4A4AQ96JQ5 239 aa16.01■□□□□ 0.15
SHROOM3-204ENST00000473602 CHMP4BQ9H444 224 aaKnown RBP16.01■□□□□ 0.15
SHROOM3-204ENST00000473602 A0A1B0GUL7 405 aa16■□□□□ 0.15
SHROOM3-204ENST00000473602 TFCP2Q12800 502 aa16■□□□□ 0.15
SHROOM3-204ENST00000473602 MVPQ14764 893 aaKnown RBP16■□□□□ 0.15
SHROOM3-204ENST00000473602 GOLGA6L2Q8N9W4 650 aaPredicted RBP16■□□□□ 0.15
SHROOM3-204ENST00000473602 CNKSR2Q8WXI2 1034 aa16■□□□□ 0.15
SHROOM3-204ENST00000473602 MRIQ9BWK5 157 aa16■□□□□ 0.15
SHROOM3-204ENST00000473602 DENND2AQ9ULE3 1009 aa16■□□□□ 0.15
SHROOM3-204ENST00000473602 DDX19BQ9UMR2 479 aa16■□□□□ 0.15
SHROOM3-204ENST00000473602 COLQQ9Y215 455 aaPredicted RBP16■□□□□ 0.15
SHROOM3-204ENST00000473602 PDS5AQ29RF7 1337 aaKnown RBP15.99■□□□□ 0.15
SHROOM3-204ENST00000473602 SLC9C1Q4G0N8 1177 aa15.99■□□□□ 0.15
SHROOM3-204ENST00000473602 PPP1R3FQ6ZSY5 799 aaPredicted RBP15.99■□□□□ 0.15
SHROOM3-204ENST00000473602 NBPF11Q86T75 865 aa15.99■□□□□ 0.15
SHROOM3-204ENST00000473602 CDAN1Q8IWY9 1227 aa15.99■□□□□ 0.15
SHROOM3-204ENST00000473602 BRI3BPQ8WY22 251 aa15.99■□□□□ 0.15
SHROOM3-204ENST00000473602 C1orf115Q9H7X2 142 aa15.99■□□□□ 0.15
SHROOM3-204ENST00000473602 ZFYVE28Q9HCC9 887 aa15.99■□□□□ 0.15
SHROOM3-204ENST00000473602 ZNF70Q9UC06 446 aaPredicted RBP15.99■□□□□ 0.15
SHROOM3-204ENST00000473602 PTCH2Q9Y6C5 1203 aa15.99■□□□□ 0.15
SHROOM3-204ENST00000473602 SALL1Q9NSC2 1324 aa15.98■□□□□ 0.15
SHROOM3-204ENST00000473602 MYCP01106 439 aaPredicted RBP15.98■□□□□ 0.15
SHROOM3-204ENST00000473602 PHKA1P46020 1223 aa15.98■□□□□ 0.15
SHROOM3-204ENST00000473602 CRKP46108 304 aa15.98■□□□□ 0.15
SHROOM3-204ENST00000473602 TNFAIP1Q13829 316 aa15.98■□□□□ 0.15
SHROOM3-204ENST00000473602 PDE3AQ14432 1141 aa15.98■□□□□ 0.15
SHROOM3-204ENST00000473602 ARHGEF6Q15052 776 aa15.98■□□□□ 0.15
SHROOM3-204ENST00000473602 TAF1CQ15572 869 aaPredicted RBP15.98■□□□□ 0.15
SHROOM3-204ENST00000473602 SLC4A8Q2Y0W8 1093 aa15.98■□□□□ 0.15
SHROOM3-204ENST00000473602 SPDYE2Q495Y8 402 aa15.98■□□□□ 0.15
SHROOM3-204ENST00000473602 CCDC102BQ68D86 513 aa15.98■□□□□ 0.15
SHROOM3-204ENST00000473602 CEP85Q6P2H3 762 aa15.98■□□□□ 0.15
SHROOM3-204ENST00000473602 TEKT1Q969V4 418 aa15.98■□□□□ 0.15
SHROOM3-204ENST00000473602 TEPSINQ96N21 525 aa15.98■□□□□ 0.15
SHROOM3-204ENST00000473602 TDRD3Q9H7E2 651 aaKnown RBP15.98■□□□□ 0.15
SHROOM3-204ENST00000473602 GPR108Q9NPR9 543 aa15.98■□□□□ 0.15
SHROOM3-204ENST00000473602 NOP58Q9Y2X3 529 aaKnown RBP15.98■□□□□ 0.15
SHROOM3-204ENST00000473602 CCL15-CCL14A0A0B4J2E2 113 aa15.97■□□□□ 0.15
SHROOM3-204ENST00000473602 ADORA1P30542 326 aa15.97■□□□□ 0.15
SHROOM3-204ENST00000473602 TIMM10P62072 90 aa15.97■□□□□ 0.15
SHROOM3-204ENST00000473602 MAP3K9P80192 1104 aa15.97■□□□□ 0.15
SHROOM3-204ENST00000473602 CCL15Q16663 113 aa15.97■□□□□ 0.15
SHROOM3-204ENST00000473602 ZGPATQ8N5A5 531 aaKnown RBP15.97■□□□□ 0.15
SHROOM3-204ENST00000473602 XAGE2Q96GT9 111 aa15.97■□□□□ 0.15
SHROOM3-204ENST00000473602 TCP10L2B9ZVM9 353 aa15.96■□□□□ 0.15
SHROOM3-204ENST00000473602 SURF6O75683 361 aaKnown RBP15.96■□□□□ 0.15
SHROOM3-204ENST00000473602 GTF2A2P52657 109 aa15.96■□□□□ 0.15
SHROOM3-204ENST00000473602 OS9Q13438 667 aaPredicted RBP15.96■□□□□ 0.15
SHROOM3-204ENST00000473602 VGLL4Q14135 290 aa15.96■□□□□ 0.15
SHROOM3-204ENST00000473602 GRIK5Q16478 980 aa15.96■□□□□ 0.15
SHROOM3-204ENST00000473602 HHIPL2Q6UWX4 724 aa15.96■□□□□ 0.15
SHROOM3-204ENST00000473602 FAM43AQ8N2R8 423 aa15.96■□□□□ 0.15
SHROOM3-204ENST00000473602 ZDHHC15Q96MV8 337 aa15.96■□□□□ 0.15
SHROOM3-204ENST00000473602 TMEM39BQ9GZU3 492 aa15.96■□□□□ 0.15
SHROOM3-204ENST00000473602 COG6Q9Y2V7 657 aa15.96■□□□□ 0.15
SHROOM3-204ENST00000473602 RASGRF1Q13972 1273 aa15.95■□□□□ 0.14
SHROOM3-204ENST00000473602 OTUD5Q96G74 571 aa15.95■□□□□ 0.14
SHROOM3-204ENST00000473602 NEUROD6Q96NK8 337 aa15.95■□□□□ 0.14
SHROOM3-204ENST00000473602 CSADQ9Y600 493 aa15.95■□□□□ 0.14
SHROOM3-204ENST00000473602 CEP290O15078 2479 aa15.95■□□□□ 0.14
SHROOM3-204ENST00000473602 MYH2Q9UKX2 1941 aa15.95■□□□□ 0.14
SHROOM3-204ENST00000473602 SZT2Q5T011 3432 aa15.95■□□□□ 0.14
SHROOM3-204ENST00000473602 H0YGN5 161 aa15.94■□□□□ 0.14
SHROOM3-204ENST00000473602 LDHBP07195 334 aaKnown RBP15.94■□□□□ 0.14
SHROOM3-204ENST00000473602 TNNI2P48788 182 aa15.94■□□□□ 0.14
SHROOM3-204ENST00000473602 GORABQ5T7V8 394 aa15.94■□□□□ 0.14
SHROOM3-204ENST00000473602 RPAP2Q8IXW5 612 aaPredicted RBP15.94■□□□□ 0.14
SHROOM3-204ENST00000473602 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.94■□□□□ 0.14
SHROOM3-204ENST00000473602 SH3TC2Q8TF17 1288 aa15.94■□□□□ 0.14
SHROOM3-204ENST00000473602 ARHGAP39Q9C0H5 1083 aa15.94■□□□□ 0.14
SHROOM3-204ENST00000473602 ZBTB40Q9NUA8 1239 aa15.94■□□□□ 0.14
SHROOM3-204ENST00000473602 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.94■□□□□ 0.14
SHROOM3-204ENST00000473602 ARID4AP29374 1257 aaPredicted RBP15.93■□□□□ 0.14
SHROOM3-204ENST00000473602 PRDX5P30044 214 aa15.93■□□□□ 0.14
SHROOM3-204ENST00000473602 HSP90AB4PQ58FF6 505 aa15.93■□□□□ 0.14
SHROOM3-204ENST00000473602 TNNI3KQ59H18 835 aa15.93■□□□□ 0.14
SHROOM3-204ENST00000473602 ERC1Q8IUD2 1116 aa15.93■□□□□ 0.14
SHROOM3-204ENST00000473602 TMOD2Q9NZR1 351 aa15.93■□□□□ 0.14
SHROOM3-204ENST00000473602 FPGT-TNNI3KV9GXZ4 949 aa15.93■□□□□ 0.14
SHROOM3-204ENST00000473602 TRIOBPQ9H2D6 2365 aa15.93■□□□□ 0.14
SHROOM3-204ENST00000473602 TLR2O60603 784 aa15.92■□□□□ 0.14
SHROOM3-204ENST00000473602 HMMRO75330 724 aa15.92■□□□□ 0.14
SHROOM3-204ENST00000473602 WDHD1O75717 1129 aaPredicted RBP15.92■□□□□ 0.14
SHROOM3-204ENST00000473602 UQCRFS1P1P0C7P4 283 aa15.92■□□□□ 0.14
SHROOM3-204ENST00000473602 FKBP1CQ5VVH2 108 aa15.92■□□□□ 0.14
SHROOM3-204ENST00000473602 SPTY2D1Q68D10 685 aaPredicted RBP15.92■□□□□ 0.14
SHROOM3-204ENST00000473602 APOBEC3HQ6NTF7 200 aaKnown RBP15.92■□□□□ 0.14
SHROOM3-204ENST00000473602 LAMB1P07942 1786 aa15.91■□□□□ 0.14
SHROOM3-204ENST00000473602 SPDYE5A6NIY4 337 aa15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms