RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP23.34■■□□□ 1.33
CCDC88B-206ENST00000473405 MAP3K9P80192 1104 aa23.33■■□□□ 1.33
CCDC88B-206ENST00000473405 SNCAIPQ9Y6H5 919 aa23.33■■□□□ 1.33
CCDC88B-206ENST00000473405 PDE4DIPQ5VU43 2346 aa23.33■■□□□ 1.33
CCDC88B-206ENST00000473405 MKI67P46013 3256 aaKnown RBP23.32■■□□□ 1.32
CCDC88B-206ENST00000473405 LDHBP07195 334 aaKnown RBP23.32■■□□□ 1.32
CCDC88B-206ENST00000473405 TIMM10P62072 90 aa23.32■■□□□ 1.32
CCDC88B-206ENST00000473405 HNRNPUQ00839 825 aaKnown RBP eCLIP23.32■■□□□ 1.32
CCDC88B-206ENST00000473405 TFCP2Q12800 502 aa23.32■■□□□ 1.32
CCDC88B-206ENST00000473405 CRHR2Q13324 411 aa23.32■■□□□ 1.32
CCDC88B-206ENST00000473405 RASGRF1Q13972 1273 aa23.32■■□□□ 1.32
CCDC88B-206ENST00000473405 CDC42EP5Q6NZY7 148 aa23.32■■□□□ 1.32
CCDC88B-206ENST00000473405 CSADQ9Y600 493 aa23.32■■□□□ 1.32
CCDC88B-206ENST00000473405 PDS5AQ29RF7 1337 aaKnown RBP23.32■■□□□ 1.32
CCDC88B-206ENST00000473405 A0A1B0GUL7 405 aa23.31■■□□□ 1.32
CCDC88B-206ENST00000473405 GNAI2P04899 355 aa23.31■■□□□ 1.32
CCDC88B-206ENST00000473405 SOX10P56693 466 aa23.31■■□□□ 1.32
CCDC88B-206ENST00000473405 NFIAQ12857 509 aa23.31■■□□□ 1.32
CCDC88B-206ENST00000473405 WRNIP1Q96S55 665 aa23.31■■□□□ 1.32
CCDC88B-206ENST00000473405 RFX7Q2KHR2 1363 aa23.3■■□□□ 1.32
CCDC88B-206ENST00000473405 PNMA6EA0A0J9YXQ4 647 aa23.3■■□□□ 1.32
CCDC88B-206ENST00000473405 FAM151AQ8WW52 585 aa23.3■■□□□ 1.32
CCDC88B-206ENST00000473405 BRI3BPQ8WY22 251 aa23.3■■□□□ 1.32
CCDC88B-206ENST00000473405 OTUD5Q96G74 571 aa23.3■■□□□ 1.32
CCDC88B-206ENST00000473405 SPDYE5A6NIY4 337 aa23.29■■□□□ 1.32
CCDC88B-206ENST00000473405 DIEXFQ68CQ4 756 aaKnown RBP23.29■■□□□ 1.32
CCDC88B-206ENST00000473405 OTUD7BQ6GQQ9 843 aa23.29■■□□□ 1.32
CCDC88B-206ENST00000473405 FBXO46Q6PJ61 603 aaPredicted RBP23.29■■□□□ 1.32
CCDC88B-206ENST00000473405 TMEM57Q8N5G2 664 aa23.29■■□□□ 1.32
CCDC88B-206ENST00000473405 ZKSCAN4Q969J2 545 aaPredicted RBP23.29■■□□□ 1.32
CCDC88B-206ENST00000473405 HOOK2Q96ED9 719 aa23.29■■□□□ 1.32
CCDC88B-206ENST00000473405 XAGE2Q96GT9 111 aa23.29■■□□□ 1.32
CCDC88B-206ENST00000473405 FAM198AQ9UFP1 575 aa23.29■■□□□ 1.32
CCDC88B-206ENST00000473405 AKAP2Q9Y2D5 859 aa23.29■■□□□ 1.32
CCDC88B-206ENST00000473405 GTF2A2P52657 109 aa23.28■■□□□ 1.32
CCDC88B-206ENST00000473405 TCP10Q12799 353 aa23.28■■□□□ 1.32
CCDC88B-206ENST00000473405 ZKSCAN2Q63HK3 967 aa23.28■■□□□ 1.32
CCDC88B-206ENST00000473405 GAKO14976 1311 aa23.28■■□□□ 1.32
CCDC88B-206ENST00000473405 CCL15-CCL14A0A0B4J2E2 113 aa23.27■■□□□ 1.32
CCDC88B-206ENST00000473405 CCL15Q16663 113 aa23.27■■□□□ 1.32
CCDC88B-206ENST00000473405 DCAF15Q66K64 600 aa23.27■■□□□ 1.32
CCDC88B-206ENST00000473405 ZGPATQ8N5A5 531 aaKnown RBP23.27■■□□□ 1.32
CCDC88B-206ENST00000473405 ATRNL1Q5VV63 1379 aa23.27■■□□□ 1.31
CCDC88B-206ENST00000473405 MVPQ14764 893 aaKnown RBP23.26■■□□□ 1.31
CCDC88B-206ENST00000473405 MIGA2Q7L4E1 593 aa23.26■■□□□ 1.31
CCDC88B-206ENST00000473405 ERO1BQ86YB8 467 aa23.26■■□□□ 1.31
CCDC88B-206ENST00000473405 USP40Q9NVE5 1235 aa23.26■■□□□ 1.31
CCDC88B-206ENST00000473405 ZSWIM8A7E2V4 1837 aa23.25■■□□□ 1.31
CCDC88B-206ENST00000473405 CAP1Q01518 475 aa23.25■■□□□ 1.31
CCDC88B-206ENST00000473405 OTOP1Q7RTM1 612 aa23.25■■□□□ 1.31
CCDC88B-206ENST00000473405 FAM43AQ8N2R8 423 aa23.25■■□□□ 1.31
CCDC88B-206ENST00000473405 ZNF341Q9BYN7 854 aa23.25■■□□□ 1.31
CCDC88B-206ENST00000473405 MAST2Q6P0Q8 1798 aa23.24■■□□□ 1.31
CCDC88B-206ENST00000473405 INPP5BP32019 993 aa23.24■■□□□ 1.31
CCDC88B-206ENST00000473405 DZIP1Q86YF9 867 aaKnown RBP23.24■■□□□ 1.31
CCDC88B-206ENST00000473405 ZFPM1Q8IX07 1006 aa23.24■■□□□ 1.31
CCDC88B-206ENST00000473405 ZNF384Q8TF68 577 aa23.24■■□□□ 1.31
CCDC88B-206ENST00000473405 ABCF2Q9UG63 623 aa23.24■■□□□ 1.31
CCDC88B-206ENST00000473405 ZNF112Q9UJU3 913 aa23.24■■□□□ 1.31
CCDC88B-206ENST00000473405 TRIM17Q9Y577 477 aa23.24■■□□□ 1.31
CCDC88B-206ENST00000473405 RBBP6Q7Z6E9 1792 aaKnown RBP23.23■■□□□ 1.31
CCDC88B-206ENST00000473405 IRF6O14896 467 aa23.23■■□□□ 1.31
CCDC88B-206ENST00000473405 PPIL2Q13356 520 aa23.23■■□□□ 1.31
CCDC88B-206ENST00000473405 PI16Q6UXB8 463 aa23.23■■□□□ 1.31
CCDC88B-206ENST00000473405 CD99L2Q8TCZ2 262 aa23.23■■□□□ 1.31
CCDC88B-206ENST00000473405 ERO1AQ96HE7 468 aa23.23■■□□□ 1.31
CCDC88B-206ENST00000473405 NEUROD6Q96NK8 337 aa23.23■■□□□ 1.31
CCDC88B-206ENST00000473405 IDI2Q9BXS1 227 aa23.23■■□□□ 1.31
CCDC88B-206ENST00000473405 HMG20BQ9P0W2 317 aa23.23■■□□□ 1.31
CCDC88B-206ENST00000473405 DOCK1Q14185 1865 aa23.22■■□□□ 1.31
CCDC88B-206ENST00000473405 RGS3P49796 1198 aa23.22■■□□□ 1.31
CCDC88B-206ENST00000473405 POLA2Q14181 598 aa23.22■■□□□ 1.31
CCDC88B-206ENST00000473405 TAF1CQ15572 869 aaPredicted RBP23.22■■□□□ 1.31
CCDC88B-206ENST00000473405 FAM163AQ96GL9 167 aaPredicted RBP23.22■■□□□ 1.31
CCDC88B-206ENST00000473405 CETPP11597 493 aa23.21■■□□□ 1.31
CCDC88B-206ENST00000473405 RLBP1P12271 317 aa23.21■■□□□ 1.31
CCDC88B-206ENST00000473405 ARID4AP29374 1257 aaPredicted RBP23.21■■□□□ 1.31
CCDC88B-206ENST00000473405 SP3Q02447 781 aa23.21■■□□□ 1.31
CCDC88B-206ENST00000473405 MECOMQ03112 1051 aa23.21■■□□□ 1.31
CCDC88B-206ENST00000473405 MROH7-TTC4A0A0A0MT08 1334 aa23.21■■□□□ 1.31
CCDC88B-206ENST00000473405 ZBED9Q6R2W3 1325 aa23.21■■□□□ 1.31
CCDC88B-206ENST00000473405 PHIPQ8WWQ0 1821 aa23.21■■□□□ 1.31
CCDC88B-206ENST00000473405 MYO5AQ9Y4I1 1855 aaKnown RBP23.21■■□□□ 1.31
CCDC88B-206ENST00000473405 PTPRFP10586 1907 aa23.21■■□□□ 1.31
CCDC88B-206ENST00000473405 WDHD1O75717 1129 aaPredicted RBP23.2■■□□□ 1.3
CCDC88B-206ENST00000473405 PPATQ06203 517 aa23.2■■□□□ 1.3
CCDC88B-206ENST00000473405 G3BP1Q13283 466 aaKnown RBP eCLIP23.2■■□□□ 1.3
CCDC88B-206ENST00000473405 SNAPC2Q13487 334 aa23.2■■□□□ 1.3
CCDC88B-206ENST00000473405 SPTY2D1Q68D10 685 aaPredicted RBP23.2■■□□□ 1.3
CCDC88B-206ENST00000473405 SH3BP5LQ7L8J4 393 aa23.2■■□□□ 1.3
CCDC88B-206ENST00000473405 SPATA5Q8NB90 893 aa23.2■■□□□ 1.3
CCDC88B-206ENST00000473405 SSH3Q8TE77 659 aa23.2■■□□□ 1.3
CCDC88B-206ENST00000473405 C1orf115Q9H7X2 142 aa23.2■■□□□ 1.3
CCDC88B-206ENST00000473405 CDK5RAP2Q96SN8 1893 aa23.19■■□□□ 1.3
CCDC88B-206ENST00000473405 BTBD19C9JJ37 291 aa23.19■■□□□ 1.3
CCDC88B-206ENST00000473405 ENTPD3O75355 529 aa23.19■■□□□ 1.3
CCDC88B-206ENST00000473405 BTDP43251 543 aa23.19■■□□□ 1.3
CCDC88B-206ENST00000473405 NOL9Q5SY16 702 aaKnown RBP23.19■■□□□ 1.3
CCDC88B-206ENST00000473405 SLF2Q8IX21 1173 aa23.19■■□□□ 1.3
CCDC88B-206ENST00000473405 FTSJ3Q8IY81 847 aaKnown RBP23.19■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 91.7 ms