RNA–Protein interactions for RNA: ENST00000473295.2

SCN1A-205, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 544 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-205ENST00000473295 SEMA6CQ9H3T2 930 aa6.09□□□□□ -1.43
SCN1A-205ENST00000473295 KRT82Q9NSB4 513 aa6.09□□□□□ -1.43
SCN1A-205ENST00000473295 PRNPP04156 253 aa6.08□□□□□ -1.44
SCN1A-205ENST00000473295 HOXA10P31260 410 aaPredicted RBP6.08□□□□□ -1.44
SCN1A-205ENST00000473295 FBXL18Q96ME1 805 aa6.08□□□□□ -1.44
SCN1A-205ENST00000473295 ATXN3LQ9H3M9 355 aa6.08□□□□□ -1.44
SCN1A-205ENST00000473295 FAM105AQ9NUU6 356 aa6.08□□□□□ -1.44
SCN1A-205ENST00000473295 GPN3Q9UHW5 284 aaPredicted RBP6.08□□□□□ -1.44
SCN1A-205ENST00000473295 ECEL1O95672 775 aa6.07□□□□□ -1.44
SCN1A-205ENST00000473295 TXKP42681 527 aa6.07□□□□□ -1.44
SCN1A-205ENST00000473295 FCGRTP55899 365 aa6.07□□□□□ -1.44
SCN1A-205ENST00000473295 TMC7Q7Z402 723 aa6.07□□□□□ -1.44
SCN1A-205ENST00000473295 EPS8L3Q8TE67 593 aaKnown RBP6.07□□□□□ -1.44
SCN1A-205ENST00000473295 PIDD1Q9HB75 910 aa6.07□□□□□ -1.44
SCN1A-205ENST00000473295 TMEM39AQ9NV64 488 aa6.07□□□□□ -1.44
SCN1A-205ENST00000473295 BSDC1Q9NW68 430 aaPredicted RBP6.07□□□□□ -1.44
SCN1A-205ENST00000473295 TMPRSS2O15393 492 aa6.06□□□□□ -1.44
SCN1A-205ENST00000473295 GSTP1P09211 210 aaKnown RBP6.06□□□□□ -1.44
SCN1A-205ENST00000473295 TAL1P17542 331 aaPredicted RBP6.06□□□□□ -1.44
SCN1A-205ENST00000473295 MAPK1P28482 360 aa6.06□□□□□ -1.44
SCN1A-205ENST00000473295 ADMP35318 185 aa6.06□□□□□ -1.44
SCN1A-205ENST00000473295 PLCB3Q01970 1234 aa6.06□□□□□ -1.44
SCN1A-205ENST00000473295 ID3Q02535 119 aa6.06□□□□□ -1.44
SCN1A-205ENST00000473295 FAAP100Q0VG06 881 aa6.06□□□□□ -1.44
SCN1A-205ENST00000473295 CYP27C1Q4G0S4 372 aa6.06□□□□□ -1.44
SCN1A-205ENST00000473295 GATA6Q92908 595 aa6.06□□□□□ -1.44
SCN1A-205ENST00000473295 KRTAP9-2Q9BYQ4 174 aa6.06□□□□□ -1.44
SCN1A-205ENST00000473295 BCO2Q9BYV7 579 aa6.06□□□□□ -1.44
SCN1A-205ENST00000473295 SRCIN1Q9C0H9 1055 aa6.06□□□□□ -1.44
SCN1A-205ENST00000473295 CCDC39Q9UFE4 941 aa6.06□□□□□ -1.44
SCN1A-205ENST00000473295 DAGLAQ9Y4D2 1042 aa6.06□□□□□ -1.44
SCN1A-205ENST00000473295 FAM170BA6NMN3 283 aa6.05□□□□□ -1.44
SCN1A-205ENST00000473295 TREHO43280 583 aa6.05□□□□□ -1.44
SCN1A-205ENST00000473295 ADAMTS4O75173 837 aa6.05□□□□□ -1.44
SCN1A-205ENST00000473295 LIG1P18858 919 aa6.05□□□□□ -1.44
SCN1A-205ENST00000473295 DSC3Q14574 896 aa6.05□□□□□ -1.44
SCN1A-205ENST00000473295 KIF4BQ2VIQ3 1234 aa6.05□□□□□ -1.44
SCN1A-205ENST00000473295 SEZ6L2Q6UXD5 910 aa6.05□□□□□ -1.44
SCN1A-205ENST00000473295 ZSCAN29Q8IWY8 852 aaPredicted RBP6.05□□□□□ -1.44
SCN1A-205ENST00000473295 FBF1Q8TES7 1133 aa6.05□□□□□ -1.44
SCN1A-205ENST00000473295 EMILIN2Q9BXX0 1053 aa6.05□□□□□ -1.44
SCN1A-205ENST00000473295 CCDC86Q9H6F5 360 aaKnown RBP6.05□□□□□ -1.44
SCN1A-205ENST00000473295 CRIM1Q9NZV1 1036 aa6.05□□□□□ -1.44
SCN1A-205ENST00000473295 PNMA6FA0A0J9YX94 578 aa6.04□□□□□ -1.44
SCN1A-205ENST00000473295 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.04□□□□□ -1.44
SCN1A-205ENST00000473295 ZNF157P51786 506 aaPredicted RBP6.04□□□□□ -1.44
SCN1A-205ENST00000473295 ENOX2Q16206 610 aaKnown RBP6.04□□□□□ -1.44
SCN1A-205ENST00000473295 OGFOD3Q6PK18 319 aa6.04□□□□□ -1.44
SCN1A-205ENST00000473295 AGBL5Q8NDL9 886 aa6.04□□□□□ -1.44
SCN1A-205ENST00000473295 FANCD2OSQ96PS1 177 aa6.04□□□□□ -1.44
SCN1A-205ENST00000473295 C1GALT1Q9NS00 363 aa6.04□□□□□ -1.44
SCN1A-205ENST00000473295 PPP1R9AQ9ULJ8 1098 aa6.04□□□□□ -1.44
SCN1A-205ENST00000473295 ZNF765Q7L2R6 523 aa6.03□□□□□ -1.44
SCN1A-205ENST00000473295 TP53INP2Q8IXH6 220 aa6.03□□□□□ -1.44
SCN1A-205ENST00000473295 SHISA5Q8N114 240 aa6.03□□□□□ -1.44
SCN1A-205ENST00000473295 STK11IPQ8N1F8 1099 aa6.03□□□□□ -1.44
SCN1A-205ENST00000473295 KCNB2Q92953 911 aa6.03□□□□□ -1.44
SCN1A-205ENST00000473295 FMNL2Q96PY5 1086 aa6.03□□□□□ -1.44
SCN1A-205ENST00000473295 ADGRE2Q9UHX3 823 aa6.03□□□□□ -1.44
SCN1A-205ENST00000473295 SAMM50Q9Y512 469 aa6.03□□□□□ -1.44
SCN1A-205ENST00000473295 KRTAP9-6A0A140TA67 174 aa6.02□□□□□ -1.45
SCN1A-205ENST00000473295 PATL2C9JE40 543 aaKnown RBP6.02□□□□□ -1.45
SCN1A-205ENST00000473295 GIPC1O14908 333 aa6.02□□□□□ -1.45
SCN1A-205ENST00000473295 ZNF862O60290 1169 aa6.02□□□□□ -1.45
SCN1A-205ENST00000473295 NME2P22392 152 aa6.02□□□□□ -1.45
SCN1A-205ENST00000473295 GSTT1P30711 240 aa6.02□□□□□ -1.45
SCN1A-205ENST00000473295 KCNA1Q09470 495 aa6.02□□□□□ -1.45
SCN1A-205ENST00000473295 SULF2Q8IWU5 870 aa6.02□□□□□ -1.45
SCN1A-205ENST00000473295 SMYD4Q8IYR2 804 aaPredicted RBP6.02□□□□□ -1.45
SCN1A-205ENST00000473295 MISP3Q96FF7 219 aa6.02□□□□□ -1.45
SCN1A-205ENST00000473295 ZC3H12CQ9C0D7 883 aaKnown RBP6.02□□□□□ -1.45
SCN1A-205ENST00000473295 LRRC4CQ9HCJ2 640 aa6.02□□□□□ -1.45
SCN1A-205ENST00000473295 AKAP2Q9Y2D5 859 aa6.02□□□□□ -1.45
SCN1A-205ENST00000473295 ARNTP27540 789 aa6.01□□□□□ -1.45
SCN1A-205ENST00000473295 ATP2B2Q01814 1243 aa6.01□□□□□ -1.45
SCN1A-205ENST00000473295 LARP7Q4G0J3 582 aaKnown RBP eCLIP6.01□□□□□ -1.45
SCN1A-205ENST00000473295 ALG1LQ6GMV1 187 aa6.01□□□□□ -1.45
SCN1A-205ENST00000473295 NXPE4Q6UWF7 544 aa6.01□□□□□ -1.45
SCN1A-205ENST00000473295 PI16Q6UXB8 463 aa6.01□□□□□ -1.45
SCN1A-205ENST00000473295 PDZD3Q86UT5 571 aa6.01□□□□□ -1.45
SCN1A-205ENST00000473295 ABI1Q8IZP0 508 aa6.01□□□□□ -1.45
SCN1A-205ENST00000473295 FLCNQ8NFG4 579 aa6.01□□□□□ -1.45
SCN1A-205ENST00000473295 WDR89Q96FK6 387 aaPredicted RBP6.01□□□□□ -1.45
SCN1A-205ENST00000473295 CEP44Q9C0F1 390 aa6.01□□□□□ -1.45
SCN1A-205ENST00000473295 GOLGA2P5Q9HBQ8 144 aa6.01□□□□□ -1.45
SCN1A-205ENST00000473295 ZC3H7BQ9UGR2 993 aaKnown RBP6.01□□□□□ -1.45
SCN1A-205ENST00000473295 PCOLCE2Q9UKZ9 415 aa6.01□□□□□ -1.45
SCN1A-205ENST00000473295 PPM1HQ9ULR3 514 aa6.01□□□□□ -1.45
SCN1A-205ENST00000473295 RNF114Q9Y508 228 aa6.01□□□□□ -1.45
SCN1A-205ENST00000473295 PCDHGC5Q9Y5F6 944 aa6.01□□□□□ -1.45
SCN1A-205ENST00000473295 DYNC1LI2O43237 492 aaPredicted RBP6□□□□□ -1.45
SCN1A-205ENST00000473295 RNGTTO60942 597 aaKnown RBP6□□□□□ -1.45
SCN1A-205ENST00000473295 MAPK8P45983 427 aa6□□□□□ -1.45
SCN1A-205ENST00000473295 ERVK-24P63145 666 aa6□□□□□ -1.45
SCN1A-205ENST00000473295 TTLL4Q14679 1199 aa6□□□□□ -1.45
SCN1A-205ENST00000473295 ANKRD24Q8TF21 1146 aa6□□□□□ -1.45
SCN1A-205ENST00000473295 ASB16Q96NS5 453 aa6□□□□□ -1.45
SCN1A-205ENST00000473295 KRTAP4-12Q9BQ66 201 aa6□□□□□ -1.45
SCN1A-205ENST00000473295 DISC1Q9NRI5 854 aa6□□□□□ -1.45
SCN1A-205ENST00000473295 TIMELESSQ9UNS1 1208 aa6□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms