RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 OSBPP22059 807 aa14.9□□□□□ -0.02
SQSTM1-206ENST00000466342 RBM5P52756 815 aaKnown RBP eCLIP14.9□□□□□ -0.02
SQSTM1-206ENST00000466342 FKBP1AP62942 108 aaKnown RBP14.9□□□□□ -0.02
SQSTM1-206ENST00000466342 TNNQ9UQP3 1299 aa14.9□□□□□ -0.02
SQSTM1-206ENST00000466342 UTYO14607 1347 aa14.9□□□□□ -0.02
SQSTM1-206ENST00000466342 ARAP2Q8WZ64 1704 aa14.89□□□□□ -0.03
SQSTM1-206ENST00000466342 FMNL1O95466 1100 aaPredicted RBP14.89□□□□□ -0.03
SQSTM1-206ENST00000466342 LMBR1LQ6UX01 489 aa14.89□□□□□ -0.03
SQSTM1-206ENST00000466342 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.89□□□□□ -0.03
SQSTM1-206ENST00000466342 TEPSINQ96N21 525 aa14.89□□□□□ -0.03
SQSTM1-206ENST00000466342 MYPNQ86TC9 1320 aa14.89□□□□□ -0.03
SQSTM1-206ENST00000466342 SPDYE5A6NIY4 337 aa14.88□□□□□ -0.03
SQSTM1-206ENST00000466342 CHRNDQ07001 517 aa14.88□□□□□ -0.03
SQSTM1-206ENST00000466342 CCDC57Q2TAC2 916 aa14.88□□□□□ -0.03
SQSTM1-206ENST00000466342 LRIT3Q3SXY7 679 aa14.88□□□□□ -0.03
SQSTM1-206ENST00000466342 PHF6Q8IWS0 365 aaKnown RBP eCLIP14.88□□□□□ -0.03
SQSTM1-206ENST00000466342 CLUAP1Q96AJ1 413 aa14.88□□□□□ -0.03
SQSTM1-206ENST00000466342 ZNF70Q9UC06 446 aaPredicted RBP14.88□□□□□ -0.03
SQSTM1-206ENST00000466342 NBPF7P0C2Y1 421 aaPredicted RBP14.87□□□□□ -0.03
SQSTM1-206ENST00000466342 KCNJ4P48050 445 aa14.87□□□□□ -0.03
SQSTM1-206ENST00000466342 SNAPC2Q13487 334 aa14.87□□□□□ -0.03
SQSTM1-206ENST00000466342 SPDYE2Q495Y8 402 aa14.87□□□□□ -0.03
SQSTM1-206ENST00000466342 EPHA10Q5JZY3 1008 aa14.87□□□□□ -0.03
SQSTM1-206ENST00000466342 ERO1BQ86YB8 467 aa14.87□□□□□ -0.03
SQSTM1-206ENST00000466342 USP44Q9H0E7 712 aa14.87□□□□□ -0.03
SQSTM1-206ENST00000466342 UNC93B1Q9H1C4 597 aa14.87□□□□□ -0.03
SQSTM1-206ENST00000466342 CPA4Q9UI42 421 aa14.87□□□□□ -0.03
SQSTM1-206ENST00000466342 CHMP3Q9Y3E7 222 aa14.87□□□□□ -0.03
SQSTM1-206ENST00000466342 IRF6O14896 467 aa14.86□□□□□ -0.03
SQSTM1-206ENST00000466342 TFRCP02786 760 aaKnown RBP14.86□□□□□ -0.03
SQSTM1-206ENST00000466342 IL1R1P14778 569 aa14.86□□□□□ -0.03
SQSTM1-206ENST00000466342 BCAMP50895 628 aa14.86□□□□□ -0.03
SQSTM1-206ENST00000466342 C15orf52Q6ZUT6 534 aaKnown RBP14.86□□□□□ -0.03
SQSTM1-206ENST00000466342 CDAN1Q8IWY9 1227 aa14.86□□□□□ -0.03
SQSTM1-206ENST00000466342 FTSJ3Q8IY81 847 aaKnown RBP14.86□□□□□ -0.03
SQSTM1-206ENST00000466342 DZIP1LQ8IYY4 767 aaKnown RBP14.86□□□□□ -0.03
SQSTM1-206ENST00000466342 TMEM57Q8N5G2 664 aa14.86□□□□□ -0.03
SQSTM1-206ENST00000466342 TDRD3Q9H7E2 651 aaKnown RBP14.86□□□□□ -0.03
SQSTM1-206ENST00000466342 A0A1B0GUL6 1792 aa14.85□□□□□ -0.03
SQSTM1-206ENST00000466342 TNNI2P48788 182 aa14.85□□□□□ -0.03
SQSTM1-206ENST00000466342 TAF7LQ5H9L4 462 aa14.85□□□□□ -0.03
SQSTM1-206ENST00000466342 LDHAL6AQ6ZMR3 332 aa14.85□□□□□ -0.03
SQSTM1-206ENST00000466342 SLAIN1Q8ND83 568 aa14.85□□□□□ -0.03
SQSTM1-206ENST00000466342 SUCLG2Q96I99 432 aa14.85□□□□□ -0.03
SQSTM1-206ENST00000466342 SNCAIPQ9Y6H5 919 aa14.85□□□□□ -0.03
SQSTM1-206ENST00000466342 IRS2Q9Y4H2 1338 aa14.85□□□□□ -0.03
SQSTM1-206ENST00000466342 MS4A1P11836 297 aa14.84□□□□□ -0.03
SQSTM1-206ENST00000466342 RLBP1P12271 317 aa14.84□□□□□ -0.03
SQSTM1-206ENST00000466342 PPIL2Q13356 520 aa14.84□□□□□ -0.03
SQSTM1-206ENST00000466342 ZNF804AQ7Z570 1209 aa14.84□□□□□ -0.03
SQSTM1-206ENST00000466342 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.84□□□□□ -0.03
SQSTM1-206ENST00000466342 KAZALD1Q96I82 304 aa14.84□□□□□ -0.03
SQSTM1-206ENST00000466342 PAWRQ96IZ0 340 aaKnown RBP14.84□□□□□ -0.03
SQSTM1-206ENST00000466342 TMEM39BQ9GZU3 492 aa14.84□□□□□ -0.03
SQSTM1-206ENST00000466342 PRDM6Q9NQX0 595 aa14.84□□□□□ -0.03
SQSTM1-206ENST00000466342 TCP10L2B9ZVM9 353 aa14.83□□□□□ -0.04
SQSTM1-206ENST00000466342 SNAP23O00161 211 aa14.83□□□□□ -0.04
SQSTM1-206ENST00000466342 PLIN1O60240 522 aa14.83□□□□□ -0.04
SQSTM1-206ENST00000466342 TAF5LO75529 589 aa14.83□□□□□ -0.04
SQSTM1-206ENST00000466342 UBTFL1P0CB47 393 aaPredicted RBP14.83□□□□□ -0.04
SQSTM1-206ENST00000466342 PRKCZQ05513 592 aa14.83□□□□□ -0.04
SQSTM1-206ENST00000466342 ANKRD23Q86SG2 305 aa14.83□□□□□ -0.04
SQSTM1-206ENST00000466342 TDHQ8IZJ6 230 aa14.83□□□□□ -0.04
SQSTM1-206ENST00000466342 ZKSCAN4Q969J2 545 aaPredicted RBP14.83□□□□□ -0.04
SQSTM1-206ENST00000466342 ZNF594Q96JF6 807 aaPredicted RBP14.83□□□□□ -0.04
SQSTM1-206ENST00000466342 MEIS3Q99687 375 aa14.83□□□□□ -0.04
SQSTM1-206ENST00000466342 CNNM1Q9NRU3 951 aa14.83□□□□□ -0.04
SQSTM1-206ENST00000466342 SERPINA10Q9UK55 444 aa14.83□□□□□ -0.04
SQSTM1-206ENST00000466342 VCANP13611 3396 aa14.83□□□□□ -0.04
SQSTM1-206ENST00000466342 DOCK3Q8IZD9 2030 aa14.83□□□□□ -0.04
SQSTM1-206ENST00000466342 PDHXO00330 501 aa14.82□□□□□ -0.04
SQSTM1-206ENST00000466342 GNAI3P08754 354 aa14.82□□□□□ -0.04
SQSTM1-206ENST00000466342 RABL6Q3YEC7 729 aaPredicted RBP14.82□□□□□ -0.04
SQSTM1-206ENST00000466342 NECAB2Q7Z6G3 386 aa14.82□□□□□ -0.04
SQSTM1-206ENST00000466342 DEFB118Q96PH6 123 aa14.82□□□□□ -0.04
SQSTM1-206ENST00000466342 CRISPLD2Q9H0B8 497 aa14.82□□□□□ -0.04
SQSTM1-206ENST00000466342 BICC1Q9H694 974 aaKnown RBP14.82□□□□□ -0.04
SQSTM1-206ENST00000466342 HDAC5Q9UQL6 1122 aa14.82□□□□□ -0.04
SQSTM1-206ENST00000466342 ADGRA2Q96PE1 1338 aa14.82□□□□□ -0.04
SQSTM1-206ENST00000466342 ADCY3O60266 1144 aa14.81□□□□□ -0.04
SQSTM1-206ENST00000466342 FCGRTP55899 365 aa14.81□□□□□ -0.04
SQSTM1-206ENST00000466342 PPATQ06203 517 aa14.81□□□□□ -0.04
SQSTM1-206ENST00000466342 ITPRIPQ8IWB1 547 aa14.81□□□□□ -0.04
SQSTM1-206ENST00000466342 ANKRD44Q8N8A2 993 aa14.81□□□□□ -0.04
SQSTM1-206ENST00000466342 PANK1Q8TE04 598 aa14.81□□□□□ -0.04
SQSTM1-206ENST00000466342 WRNIP1Q96S55 665 aa14.81□□□□□ -0.04
SQSTM1-206ENST00000466342 ZMYND8Q9ULU4 1186 aaPredicted RBP14.81□□□□□ -0.04
SQSTM1-206ENST00000466342 GABRQQ9UN88 632 aa14.81□□□□□ -0.04
SQSTM1-206ENST00000466342 JAG2Q9Y219 1238 aa14.81□□□□□ -0.04
SQSTM1-206ENST00000466342 UBE4AQ14139 1066 aa14.8□□□□□ -0.04
SQSTM1-206ENST00000466342 PDE3AQ14432 1141 aa14.8□□□□□ -0.04
SQSTM1-206ENST00000466342 C7orf61Q8IZ16 206 aa14.8□□□□□ -0.04
SQSTM1-206ENST00000466342 PXYLP1Q8TE99 480 aa14.8□□□□□ -0.04
SQSTM1-206ENST00000466342 PAK6Q9NQU5 681 aaPredicted RBP14.8□□□□□ -0.04
SQSTM1-206ENST00000466342 TTF2Q9UNY4 1162 aaKnown RBP14.8□□□□□ -0.04
SQSTM1-206ENST00000466342 AK9Q5TCS8 1911 aa14.8□□□□□ -0.04
SQSTM1-206ENST00000466342 INHAP05111 366 aa14.79□□□□□ -0.04
SQSTM1-206ENST00000466342 BCRP11274 1271 aa14.79□□□□□ -0.04
SQSTM1-206ENST00000466342 FAM205AQ6ZU69 1335 aa14.79□□□□□ -0.04
SQSTM1-206ENST00000466342 RPTORQ8N122 1335 aa14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms