RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 COL22A1Q8NFW1 1626 aaPredicted RBP10.42□□□□□ -0.74
SYNE1-217ENST00000466159 SPTLC2O15270 562 aa10.41□□□□□ -0.74
SYNE1-217ENST00000466159 NTSR2O95665 410 aa10.41□□□□□ -0.74
SYNE1-217ENST00000466159 ALX1Q15699 326 aa10.41□□□□□ -0.74
SYNE1-217ENST00000466159 CCDC152Q4G0S7 254 aa10.41□□□□□ -0.74
SYNE1-217ENST00000466159 SYNE3Q6ZMZ3 975 aa10.41□□□□□ -0.74
SYNE1-217ENST00000466159 BRAPQ7Z569 592 aa10.41□□□□□ -0.74
SYNE1-217ENST00000466159 FBXW7Q969H0 707 aa10.41□□□□□ -0.74
SYNE1-217ENST00000466159 ALG1Q9BT22 464 aa10.41□□□□□ -0.74
SYNE1-217ENST00000466159 CDCA7Q9BWT1 371 aaPredicted RBP10.41□□□□□ -0.74
SYNE1-217ENST00000466159 A0A1W2PQ27 194 aa10.41□□□□□ -0.74
SYNE1-217ENST00000466159 A0A1W2PQ64 194 aa10.41□□□□□ -0.74
SYNE1-217ENST00000466159 A0A1W2PQD8 194 aa10.41□□□□□ -0.74
SYNE1-217ENST00000466159 GSG1L2A8MUP6 293 aa10.41□□□□□ -0.74
SYNE1-217ENST00000466159 UBE2Q2LH0YL09 131 aa10.41□□□□□ -0.74
SYNE1-217ENST00000466159 CAVIN2O95810 425 aa10.41□□□□□ -0.74
SYNE1-217ENST00000466159 IGHMBP2P38935 993 aaKnown RBP10.41□□□□□ -0.74
SYNE1-217ENST00000466159 RBM10P98175 930 aaKnown RBP10.41□□□□□ -0.74
SYNE1-217ENST00000466159 HSP90AA2PQ14568 343 aaPredicted RBP10.41□□□□□ -0.74
SYNE1-217ENST00000466159 PARP10Q53GL7 1025 aa10.41□□□□□ -0.74
SYNE1-217ENST00000466159 TMEM67Q5HYA8 995 aa10.41□□□□□ -0.74
SYNE1-217ENST00000466159 NFXL1Q6ZNB6 911 aa10.41□□□□□ -0.74
SYNE1-217ENST00000466159 STK11IPQ8N1F8 1099 aa10.41□□□□□ -0.74
SYNE1-217ENST00000466159 TMEM87BQ96K49 555 aa10.41□□□□□ -0.74
SYNE1-217ENST00000466159 SDF4Q9BRK5 362 aa10.41□□□□□ -0.74
SYNE1-217ENST00000466159 LY9Q9HBG7 655 aa10.41□□□□□ -0.74
SYNE1-217ENST00000466159 IQSEC3Q9UPP2 1182 aaPredicted RBP10.41□□□□□ -0.74
SYNE1-217ENST00000466159 GOLGA6L19H0YKK7 550 aa10.4□□□□□ -0.74
SYNE1-217ENST00000466159 ZBTB43O43298 467 aa10.4□□□□□ -0.74
SYNE1-217ENST00000466159 KCNQ2O43526 872 aa10.4□□□□□ -0.74
SYNE1-217ENST00000466159 PHLPP1O60346 1717 aa10.4□□□□□ -0.74
SYNE1-217ENST00000466159 YEATS4O95619 227 aa10.4□□□□□ -0.74
SYNE1-217ENST00000466159 CHRNDQ07001 517 aa10.4□□□□□ -0.74
SYNE1-217ENST00000466159 LRMPQ12912 555 aa10.4□□□□□ -0.74
SYNE1-217ENST00000466159 ANO1Q5XXA6 986 aa10.4□□□□□ -0.74
SYNE1-217ENST00000466159 LCORLQ8N3X6 602 aa10.4□□□□□ -0.74
SYNE1-217ENST00000466159 KCNG4Q8TDN1 519 aa10.4□□□□□ -0.74
SYNE1-217ENST00000466159 DOCK2Q92608 1830 aa10.4□□□□□ -0.74
SYNE1-217ENST00000466159 FAM217BQ9NTX9 383 aaPredicted RBP10.4□□□□□ -0.74
SYNE1-217ENST00000466159 COL4A1P02462 1669 aa10.4□□□□□ -0.74
SYNE1-217ENST00000466159 AHDC1Q5TGY3 1603 aaPredicted RBP10.4□□□□□ -0.74
SYNE1-217ENST00000466159 WTIPA6NIX2 430 aaPredicted RBP10.4□□□□□ -0.74
SYNE1-217ENST00000466159 RANBP6O60518 1105 aaKnown RBP10.4□□□□□ -0.74
SYNE1-217ENST00000466159 NTRK3Q16288 839 aa10.4□□□□□ -0.74
SYNE1-217ENST00000466159 KRT40Q6A162 431 aa10.4□□□□□ -0.74
SYNE1-217ENST00000466159 DHX40Q8IX18 779 aaKnown RBP10.4□□□□□ -0.74
SYNE1-217ENST00000466159 MIGA1Q8NAN2 632 aa10.4□□□□□ -0.74
SYNE1-217ENST00000466159 THRAP3Q9Y2W1 955 aaKnown RBP10.4□□□□□ -0.74
SYNE1-217ENST00000466159 CHD4Q14839 1912 aa10.4□□□□□ -0.74
SYNE1-217ENST00000466159 NUTM2BA6NNL0 878 aaPredicted RBP10.39□□□□□ -0.75
SYNE1-217ENST00000466159 GOLGA8AA7E2F4 631 aa10.39□□□□□ -0.75
SYNE1-217ENST00000466159 NUTM2EB1AL46 878 aaPredicted RBP10.39□□□□□ -0.75
SYNE1-217ENST00000466159 IFIT3O14879 490 aaKnown RBP10.39□□□□□ -0.75
SYNE1-217ENST00000466159 RRP9O43818 475 aaKnown RBP10.39□□□□□ -0.75
SYNE1-217ENST00000466159 MARCKSP29966 332 aaPredicted RBP10.39□□□□□ -0.75
SYNE1-217ENST00000466159 RRP12Q5JTH9 1297 aaKnown RBP10.39□□□□□ -0.75
SYNE1-217ENST00000466159 SGMS1Q86VZ5 419 aa10.39□□□□□ -0.75
SYNE1-217ENST00000466159 VPS37DQ86XT2 251 aa10.39□□□□□ -0.75
SYNE1-217ENST00000466159 NUTM2AQ8IVF1 878 aaPredicted RBP10.39□□□□□ -0.75
SYNE1-217ENST00000466159 ZKSCAN3Q9BRR0 538 aa10.39□□□□□ -0.75
SYNE1-217ENST00000466159 ANO10Q9NW15 660 aa10.39□□□□□ -0.75
SYNE1-217ENST00000466159 CLIP2Q9UDT6 1046 aa10.39□□□□□ -0.75
SYNE1-217ENST00000466159 SLC4A4Q9Y6R1 1079 aa10.39□□□□□ -0.75
SYNE1-217ENST00000466159 BECN2A8MW95 431 aa10.39□□□□□ -0.75
SYNE1-217ENST00000466159 WDHD1O75717 1129 aaPredicted RBP10.39□□□□□ -0.75
SYNE1-217ENST00000466159 CDKL5O76039 1030 aa10.39□□□□□ -0.75
SYNE1-217ENST00000466159 IARSP41252 1262 aaKnown RBP10.39□□□□□ -0.75
SYNE1-217ENST00000466159 CCDC144BQ3MJ40 725 aa10.39□□□□□ -0.75
SYNE1-217ENST00000466159 AXDND1Q5T1B0 1012 aaPredicted RBP10.39□□□□□ -0.75
SYNE1-217ENST00000466159 AKNAD1Q5T1N1 836 aa10.39□□□□□ -0.75
SYNE1-217ENST00000466159 ARHGAP30Q7Z6I6 1101 aaPredicted RBP10.39□□□□□ -0.75
SYNE1-217ENST00000466159 LRP2BPQ9P2M1 347 aa10.39□□□□□ -0.75
SYNE1-217ENST00000466159 TDO2P48775 406 aa10.38□□□□□ -0.75
SYNE1-217ENST00000466159 KCNQ4P56696 695 aa10.38□□□□□ -0.75
SYNE1-217ENST00000466159 CPLX2Q6PUV4 134 aaKnown RBP10.38□□□□□ -0.75
SYNE1-217ENST00000466159 MFSD6Q6ZSS7 791 aa10.38□□□□□ -0.75
SYNE1-217ENST00000466159 C3orf67Q6ZVT6 689 aa10.38□□□□□ -0.75
SYNE1-217ENST00000466159 TOMM22Q9NS69 142 aa10.38□□□□□ -0.75
SYNE1-217ENST00000466159 FAM13BQ9NYF5 915 aa10.38□□□□□ -0.75
SYNE1-217ENST00000466159 SLC12A7Q9Y666 1083 aa10.38□□□□□ -0.75
SYNE1-217ENST00000466159 TAF1P21675 1872 aa10.38□□□□□ -0.75
SYNE1-217ENST00000466159 ZNF202O95125 648 aa10.38□□□□□ -0.75
SYNE1-217ENST00000466159 LIFRP42702 1097 aa10.38□□□□□ -0.75
SYNE1-217ENST00000466159 SLC39A14Q15043 492 aa10.38□□□□□ -0.75
SYNE1-217ENST00000466159 SARM1Q6SZW1 724 aa10.38□□□□□ -0.75
SYNE1-217ENST00000466159 ADGRA1Q86SQ6 560 aa10.38□□□□□ -0.75
SYNE1-217ENST00000466159 AOPEPQ8N6M6 819 aa10.38□□□□□ -0.75
SYNE1-217ENST00000466159 PKNOX2Q96KN3 472 aa10.38□□□□□ -0.75
SYNE1-217ENST00000466159 KIAA1468Q9P260 1216 aa10.38□□□□□ -0.75
SYNE1-217ENST00000466159 NRAPQ86VF7 1730 aa10.38□□□□□ -0.75
SYNE1-217ENST00000466159 ECM29Q5VYK3 1845 aa10.38□□□□□ -0.75
SYNE1-217ENST00000466159 MROH7-TTC4A0A0A0MT08 1334 aa10.38□□□□□ -0.75
SYNE1-217ENST00000466159 SPATA31A5Q5VU36 1347 aa10.38□□□□□ -0.75
SYNE1-217ENST00000466159 SPATA31A7Q8IWB4 1347 aa10.38□□□□□ -0.75
SYNE1-217ENST00000466159 CCDC69A6NI79 296 aa10.37□□□□□ -0.75
SYNE1-217ENST00000466159 PFKFB1P16118 471 aa10.37□□□□□ -0.75
SYNE1-217ENST00000466159 GYG1P46976 350 aa10.37□□□□□ -0.75
SYNE1-217ENST00000466159 GNL2Q13823 731 aaKnown RBP10.37□□□□□ -0.75
SYNE1-217ENST00000466159 ERFEQ4G0M1 354 aa10.37□□□□□ -0.75
SYNE1-217ENST00000466159 SMIM5Q71RC9 77 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms