RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 SLFNL1Q499Z3 407 aa14.21□□□□□ -0.13
CUX1-207ENST00000465461 NBPF12Q5TAG4 269 aaPredicted RBP14.21□□□□□ -0.13
CUX1-207ENST00000465461 NAA16Q6N069 864 aaPredicted RBP14.21□□□□□ -0.13
CUX1-207ENST00000465461 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.21□□□□□ -0.13
CUX1-207ENST00000465461 LNPKQ9C0E8 428 aa14.21□□□□□ -0.13
CUX1-207ENST00000465461 GBA2Q9HCG7 927 aaPredicted RBP14.21□□□□□ -0.13
CUX1-207ENST00000465461 ECHDC1Q9NTX5 307 aa14.21□□□□□ -0.13
CUX1-207ENST00000465461 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.21□□□□□ -0.13
CUX1-207ENST00000465461 CNTNAP1P78357 1384 aa14.21□□□□□ -0.14
CUX1-207ENST00000465461 CHGBP05060 677 aa14.2□□□□□ -0.14
CUX1-207ENST00000465461 GRM1Q13255 1194 aa14.2□□□□□ -0.14
CUX1-207ENST00000465461 PAXIP1Q6ZW49 1069 aaPredicted RBP14.2□□□□□ -0.14
CUX1-207ENST00000465461 ZFPM1Q8IX07 1006 aa14.2□□□□□ -0.14
CUX1-207ENST00000465461 SMC5Q8IY18 1101 aa14.2□□□□□ -0.14
CUX1-207ENST00000465461 MAGEB6Q8N7X4 407 aa14.2□□□□□ -0.14
CUX1-207ENST00000465461 FAM163AQ96GL9 167 aaPredicted RBP14.2□□□□□ -0.14
CUX1-207ENST00000465461 HAUS7Q99871 368 aa14.2□□□□□ -0.14
CUX1-207ENST00000465461 PAG1Q9NWQ8 432 aa14.2□□□□□ -0.14
CUX1-207ENST00000465461 ZBTB47Q9UFB7 747 aaPredicted RBP14.2□□□□□ -0.14
CUX1-207ENST00000465461 TLL2Q9Y6L7 1015 aa14.2□□□□□ -0.14
CUX1-207ENST00000465461 GPR75-ASB3A0A0A6YYF3 556 aa14.19□□□□□ -0.14
CUX1-207ENST00000465461 UBE2Q2LH0YL09 131 aa14.19□□□□□ -0.14
CUX1-207ENST00000465461 CYP7A1P22680 504 aa14.19□□□□□ -0.14
CUX1-207ENST00000465461 DYNLL1P63167 89 aaKnown RBP14.19□□□□□ -0.14
CUX1-207ENST00000465461 GSTO1P78417 241 aa14.19□□□□□ -0.14
CUX1-207ENST00000465461 TTLL12Q14166 644 aaPredicted RBP14.19□□□□□ -0.14
CUX1-207ENST00000465461 DEFB115Q30KQ5 88 aa14.19□□□□□ -0.14
CUX1-207ENST00000465461 SAPCD2Q86UD0 394 aa14.19□□□□□ -0.14
CUX1-207ENST00000465461 SLF2Q8IX21 1173 aa14.19□□□□□ -0.14
CUX1-207ENST00000465461 C2orf69Q8N8R5 385 aa14.19□□□□□ -0.14
CUX1-207ENST00000465461 TEPSINQ96N21 525 aa14.19□□□□□ -0.14
CUX1-207ENST00000465461 AATFQ9NY61 560 aaKnown RBP eCLIP14.19□□□□□ -0.14
CUX1-207ENST00000465461 TMOD2Q9NZR1 351 aa14.19□□□□□ -0.14
CUX1-207ENST00000465461 FAM198AQ9UFP1 575 aa14.19□□□□□ -0.14
CUX1-207ENST00000465461 SSC5DA1L4H1 1573 aa14.18□□□□□ -0.14
CUX1-207ENST00000465461 LDHCP07864 332 aa14.18□□□□□ -0.14
CUX1-207ENST00000465461 HUNKP57058 714 aa14.18□□□□□ -0.14
CUX1-207ENST00000465461 RHBDL3P58872 404 aa14.18□□□□□ -0.14
CUX1-207ENST00000465461 PICALMQ13492 652 aa14.18□□□□□ -0.14
CUX1-207ENST00000465461 TNFAIP1Q13829 316 aa14.18□□□□□ -0.14
CUX1-207ENST00000465461 CYP4F22Q6NT55 531 aa14.18□□□□□ -0.14
CUX1-207ENST00000465461 MIGA1Q8NAN2 632 aa14.18□□□□□ -0.14
CUX1-207ENST00000465461 SH3RF3Q8TEJ3 882 aaPredicted RBP14.18□□□□□ -0.14
CUX1-207ENST00000465461 DDX4Q9NQI0 724 aaKnown RBP14.18□□□□□ -0.14
CUX1-207ENST00000465461 WDHD1O75717 1129 aaPredicted RBP14.17□□□□□ -0.14
CUX1-207ENST00000465461 SLURP2P0DP57 97 aa14.17□□□□□ -0.14
CUX1-207ENST00000465461 MX1P20591 662 aa14.17□□□□□ -0.14
CUX1-207ENST00000465461 TNNI2P48788 182 aa14.17□□□□□ -0.14
CUX1-207ENST00000465461 VEGFBP49765 207 aa14.17□□□□□ -0.14
CUX1-207ENST00000465461 RGS3P49796 1198 aa14.17□□□□□ -0.14
CUX1-207ENST00000465461 MAP3K12Q12852 859 aa14.17□□□□□ -0.14
CUX1-207ENST00000465461 TTF1Q15361 905 aaPredicted RBP14.17□□□□□ -0.14
CUX1-207ENST00000465461 CHD1LQ86WJ1 897 aa14.17□□□□□ -0.14
CUX1-207ENST00000465461 PI4K2BQ8TCG2 481 aa14.17□□□□□ -0.14
CUX1-207ENST00000465461 KLRG1Q96E93 195 aa14.17□□□□□ -0.14
CUX1-207ENST00000465461 GPATCH3Q96I76 525 aa14.17□□□□□ -0.14
CUX1-207ENST00000465461 ANGEL1Q9UNK9 670 aaKnown RBP14.17□□□□□ -0.14
CUX1-207ENST00000465461 PPP2R3BQ9Y5P8 575 aa14.17□□□□□ -0.14
CUX1-207ENST00000465461 DOCK2Q92608 1830 aa14.17□□□□□ -0.14
CUX1-207ENST00000465461 MAST2Q6P0Q8 1798 aa14.17□□□□□ -0.14
CUX1-207ENST00000465461 SALL3Q9BXA9 1300 aa14.16□□□□□ -0.14
CUX1-207ENST00000465461 RASSF10A6NK89 507 aa14.16□□□□□ -0.14
CUX1-207ENST00000465461 PDE6AP16499 860 aa14.16□□□□□ -0.14
CUX1-207ENST00000465461 NF2P35240 595 aa14.16□□□□□ -0.14
CUX1-207ENST00000465461 NUCB1Q02818 461 aa14.16□□□□□ -0.14
CUX1-207ENST00000465461 SLC9C2Q5TAH2 1124 aa14.16□□□□□ -0.14
CUX1-207ENST00000465461 ZNF532Q9HCE3 1301 aa14.15□□□□□ -0.14
CUX1-207ENST00000465461 USP2O75604 605 aaPredicted RBP14.15□□□□□ -0.14
CUX1-207ENST00000465461 CENPBP07199 599 aaPredicted RBP14.15□□□□□ -0.14
CUX1-207ENST00000465461 SUPT20HL1Q3ZLR7 823 aa14.15□□□□□ -0.14
CUX1-207ENST00000465461 MIGA2Q7L4E1 593 aa14.15□□□□□ -0.14
CUX1-207ENST00000465461 SH3BP5LQ7L8J4 393 aa14.15□□□□□ -0.14
CUX1-207ENST00000465461 FAM83AQ86UY5 434 aa14.15□□□□□ -0.14
CUX1-207ENST00000465461 TEX11Q8IYF3 940 aa14.15□□□□□ -0.14
CUX1-207ENST00000465461 FAM151AQ8WW52 585 aa14.15□□□□□ -0.14
CUX1-207ENST00000465461 NOL10Q9BSC4 688 aaKnown RBP14.15□□□□□ -0.14
CUX1-207ENST00000465461 IDI2Q9BXS1 227 aa14.15□□□□□ -0.14
CUX1-207ENST00000465461 TTC41PQ6P2S7 1318 aa14.15□□□□□ -0.15
CUX1-207ENST00000465461 TCRBV5S4A2TA0A5A2 114 aa14.14□□□□□ -0.15
CUX1-207ENST00000465461 DDTLA6NHG4 134 aaPredicted RBP14.14□□□□□ -0.15
CUX1-207ENST00000465461 AOC2O75106 756 aa14.14□□□□□ -0.15
CUX1-207ENST00000465461 BAG3O95817 575 aa14.14□□□□□ -0.15
CUX1-207ENST00000465461 PDE1AP54750 535 aa14.14□□□□□ -0.15
CUX1-207ENST00000465461 FKBP1CQ5VVH2 108 aa14.14□□□□□ -0.15
CUX1-207ENST00000465461 RGMBQ6NW40 437 aa14.14□□□□□ -0.15
CUX1-207ENST00000465461 ZSCAN29Q8IWY8 852 aaPredicted RBP14.14□□□□□ -0.15
CUX1-207ENST00000465461 TGFBRAP1Q8WUH2 860 aa14.14□□□□□ -0.15
CUX1-207ENST00000465461 CAPNS2Q96L46 248 aa14.14□□□□□ -0.15
CUX1-207ENST00000465461 ZIC5Q96T25 663 aa14.14□□□□□ -0.15
CUX1-207ENST00000465461 WDR33Q9C0J8 1336 aaKnown RBP14.14□□□□□ -0.15
CUX1-207ENST00000465461 RFX7Q2KHR2 1363 aa14.13□□□□□ -0.15
CUX1-207ENST00000465461 ERC2O15083 957 aa14.13□□□□□ -0.15
CUX1-207ENST00000465461 GLRX3O76003 335 aaKnown RBP14.13□□□□□ -0.15
CUX1-207ENST00000465461 PDE4AP27815 886 aa14.13□□□□□ -0.15
CUX1-207ENST00000465461 ADD2P35612 726 aa14.13□□□□□ -0.15
CUX1-207ENST00000465461 ZNF157P51786 506 aaPredicted RBP14.13□□□□□ -0.15
CUX1-207ENST00000465461 PPP4CP60510 307 aa14.13□□□□□ -0.15
CUX1-207ENST00000465461 MKRN3Q13064 507 aaKnown RBP14.13□□□□□ -0.15
CUX1-207ENST00000465461 SLC4A8Q2Y0W8 1093 aa14.13□□□□□ -0.15
CUX1-207ENST00000465461 ARMC9Q7Z3E5 817 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms